mRNA_M-pyrifera_M_contig126886.5410.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126886.5410.1
Unique NamemRNA_M-pyrifera_M_contig126886.5410.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A6C7N6_9PLAN (UPF0145 protein PM8797T_29778 n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6C7N6_9PLAN)

HSP 1 Score: 157 bits (396), Expect = 5.660e-48
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 255
            GIIVRSPTIA+GF+GGLKNIVGGQIGAYTEMCEQARQQA+D L+AHARE GANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP
Sbjct:   25 GIIVRSPTIAQGFLGGLKNIVGGQIGAYTEMCEQARQQAFDRLLAHAREQGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A7C5WGW8_9BACT (UPF0145 protein ENK10_05690 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5WGW8_9BACT)

HSP 1 Score: 152 bits (384), Expect = 4.060e-46
Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIE 252
            GIIVRSPTIA+G +GGLKNI+GG+IGAYTEMCEQARQQAYDLL+ HARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVI+
Sbjct:   23 GIIVRSPTIAQGVLGGLKNIIGGRIGAYTEMCEQARQQAYDLLLEHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIK 106
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BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A2H6FM51_9BACT (UPF0145 protein BMS3Abin08_02277 n=1 Tax=bacterium BMS3Abin08 TaxID=2005716 RepID=A0A2H6FM51_9BACT)

HSP 1 Score: 151 bits (382), Expect = 7.950e-46
Identity = 73/85 (85.88%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 255
            GIIVR+PTIA+G +GGLKNI+GG+IGAYT+MCEQAR+QAYDLLI HAR++GANA+VGLRYDASEVVSKGSATEVLCYGTAVVIEP
Sbjct:   25 GIIVRAPTIAQGILGGLKNIIGGRIGAYTDMCEQARRQAYDLLIEHARDIGANAVVGLRYDASEVVSKGSATEVLCYGTAVVIEP 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A3M0XSF3_9BACT (UPF0145 protein D6833_06600 n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3M0XSF3_9BACT)

HSP 1 Score: 148 bits (374), Expect = 1.240e-44
Identity = 72/85 (84.71%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 255
            GIIVR+PTIA+G +G LKNIVGG+IGAYT+MCEQAR+QA++LL+ HARELGANA+VGLRYDASEVVSKGSATEVLCYGTAVVIEP
Sbjct:   23 GIIVRAPTIAQGILGALKNIVGGRIGAYTQMCEQAREQAFELLVQHARELGANAVVGLRYDASEVVSKGSATEVLCYGTAVVIEP 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A2N9NG59_9BACT (UPF0145 protein SBV1_130013 n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2N9NG59_9BACT)

HSP 1 Score: 145 bits (366), Expect = 2.050e-43
Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEPV 258
            GIIVRSPTIA+G +GGLKNI+GGQIGAYTEMCEQARQQA+D ++ HA +LGANAIVG+RYDASEVVSKGSATEVLCYGTAVV+  +
Sbjct:   23 GIIVRSPTIAQGILGGLKNIIGGQIGAYTEMCEQARQQAFDSMVGHAAQLGANAIVGVRYDASEVVSKGSATEVLCYGTAVVVTKI 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: B9XCC4_PEDPL (UPF0145 protein Cflav_PD5227 n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XCC4_PEDPL)

HSP 1 Score: 144 bits (362), Expect = 8.100e-43
Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEPV 258
            GIIVR+PTIA+G +GGLKNI+GG+IGAYTEMCEQARQQAYD L+ HA+++GANAIVG+RYDASEVVSKGSATEVLCYGTAVV+  +
Sbjct:   23 GIIVRAPTIAQGIVGGLKNIIGGRIGAYTEMCEQARQQAYDSLLIHAQQMGANAIVGVRYDASEVVSKGSATEVLCYGTAVVVTKI 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A7X7YKD2_9BACT (UPF0145 protein GX455_16995 n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7YKD2_9BACT)

HSP 1 Score: 143 bits (361), Expect = 1.300e-42
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 255
            GIIVRSPT+ +GF+GGLKNI+GG+IGAYTEMCEQAR QA+DLL  HA  LGANAI+G+RYDASEVVSKGSATEVLCYGTAVV+ P
Sbjct:   23 GIIVRSPTLIQGFVGGLKNIIGGRIGAYTEMCEQARSQAFDLLCQHAEALGANAIIGMRYDASEVVSKGSATEVLCYGTAVVVAP 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: UPI001E3A3C7C (YbjQ family protein n=1 Tax=Geomonas sp. RF6 TaxID=2897342 RepID=UPI001E3A3C7C)

HSP 1 Score: 141 bits (355), Expect = 1.040e-41
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEP 255
            GI+VRSPTIA+G +G LKNI+GG IGAY+ MCEQARQQAY+LL+ HA E+GANA+VGLRYDASEVVS+ SATEVLCYGTAVVIEP
Sbjct:   25 GIVVRSPTIAQGILGSLKNIIGGNIGAYSRMCEQARQQAYELLVQHALEIGANAVVGLRYDASEVVSRESATEVLCYGTAVVIEP 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A2N9LGR1_9BACT (UPF0145 protein SBA2_100051 n=1 Tax=Acidobacteriia bacterium SbA2 TaxID=2043162 RepID=A0A2N9LGR1_9BACT)

HSP 1 Score: 141 bits (355), Expect = 1.100e-41
Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEPV 258
            GIIVR+PTIA+G +GGLK+I+GG+IGAYTEMCEQARQQAYDL+I HA ++GANA+VGL YDASEVV + SATEVLCYGTAVVIEP+
Sbjct:   25 GIIVRAPTIAQGILGGLKSIIGGRIGAYTEMCEQARQQAYDLMIEHALQVGANAVVGLHYDASEVVGRESATEVLCYGTAVVIEPL 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Match: A0A3N9W385_9DELT (UPF0145 protein EHM79_04620 n=3 Tax=Bacteria TaxID=2 RepID=A0A3N9W385_9DELT)

HSP 1 Score: 140 bits (353), Expect = 2.030e-41
Identity = 70/83 (84.34%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHARELGANAIVGLRYDASEVVSKGSATEVLCYGTAVVI 249
            GIIVRSPTIA+G +GGLKNI+GG+IGAYTEMCEQAR QA++ L+  ARE+GANAIVGLRYDASEVVSKGSATEVLCYGTAVVI
Sbjct:   25 GIIVRSPTIAQGIIGGLKNIIGGRIGAYTEMCEQARLQAFESLVQQAREMGANAIVGLRYDASEVVSKGSATEVLCYGTAVVI 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126886.5410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A6C7N6_9PLAN5.660e-4892.94UPF0145 protein PM8797T_29778 n=9 Tax=Planctomycet... [more]
A0A7C5WGW8_9BACT4.060e-4690.48UPF0145 protein ENK10_05690 n=1 Tax=Acidobacteria ... [more]
A0A2H6FM51_9BACT7.950e-4685.88UPF0145 protein BMS3Abin08_02277 n=1 Tax=bacterium... [more]
A0A3M0XSF3_9BACT1.240e-4484.71UPF0145 protein D6833_06600 n=1 Tax=Candidatus Par... [more]
A0A2N9NG59_9BACT2.050e-4381.40UPF0145 protein SBV1_130013 n=1 Tax=Verrucomicrobi... [more]
B9XCC4_PEDPL8.100e-4380.23UPF0145 protein Cflav_PD5227 n=1 Tax=Pedosphaera p... [more]
A0A7X7YKD2_9BACT1.300e-4281.18UPF0145 protein GX455_16995 n=1 Tax=Phycisphaerae ... [more]
UPI001E3A3C7C1.040e-4180.00YbjQ family protein n=1 Tax=Geomonas sp. RF6 TaxID... [more]
A0A2N9LGR1_9BACT1.100e-4179.07UPF0145 protein SBA2_100051 n=1 Tax=Acidobacteriia... [more]
A0A3N9W385_9DELT2.030e-4184.34UPF0145 protein EHM79_04620 n=3 Tax=Bacteria TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126886contigM-pyrifera_M_contig126886:231..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.5
Seed ortholog evalue2.9e-36
Seed eggNOG ortholog344747.PM8797T_29778
Preferred nameybjQ
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative heavy-metal-binding
EggNOG OGs2J0RP@203682,COG0393@1,COG0393@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.573968-CDS-M-pyrifera_M_contig126886:230..5061622815782.573968-CDS-M-pyrifera_M_contig126886:230..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126886 231..506 -
1692277567.0242467-CDS-M-pyrifera_M_contig126886:230..5061692277567.0242467-CDS-M-pyrifera_M_contig126886:230..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126886 231..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126886.5410.1prot_M-pyrifera_M_contig126886.5410.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126886 231..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126886.5410.1

>prot_M-pyrifera_M_contig126886.5410.1 ID=prot_M-pyrifera_M_contig126886.5410.1|Name=mRNA_M-pyrifera_M_contig126886.5410.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
GIIVRSPTIARGFMGGLKNIVGGQIGAYTEMCEQARQQAYDLLIAHAREL
GANAIVGLRYDASEVVSKGSATEVLCYGTAVVIEPVGDVNA*
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mRNA from alignment at M-pyrifera_M_contig126886:231..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126886.5410.1 ID=mRNA_M-pyrifera_M_contig126886.5410.1|Name=mRNA_M-pyrifera_M_contig126886.5410.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig126886:231..506- (Macrocystis pyrifera P11B4 male)
GGGATCATCGTGCGGTCGCCGACGATTGCGCGGGGATTCATGGGTGGGTT
AAAAAATATCGTGGGCGGCCAGATTGGCGCCTATACCGAGATGTGCGAAC
AGGCCCGGCAGCAGGCCTATGATTTGTTAATTGCCCACGCCCGCGAACTG
GGAGCGAATGCGATTGTTGGTCTGCGCTACGATGCCTCGGAAGTGGTCAG
CAAAGGCTCGGCGACAGAAGTGCTATGTTATGGAACGGCGGTGGTAATTG
AACCTGTTGGAGACGTAAATGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126886:231..506-

>mRNA_M-pyrifera_M_contig126886.5410.1 ID=mRNA_M-pyrifera_M_contig126886.5410.1|Name=mRNA_M-pyrifera_M_contig126886.5410.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig126886:231..506- (Macrocystis pyrifera P11B4 male)
GGGATCATCGTGCGGTCGCCGACGATTGCGCGGGGATTCATGGGTGGGTT
AAAAAATATCGTGGGCGGCCAGATTGGCGCCTATACCGAGATGTGCGAAC
AGGCCCGGCAGCAGGCCTATGATTTGTTAATTGCCCACGCCCGCGAACTG
GGAGCGAATGCGATTGTTGGTCTGCGCTACGATGCCTCGGAAGTGGTCAG
CAAAGGCTCGGCGACAGAAGTGCTATGTTATGGAACGGCGGTGGTAATTG
AACCTGTTGGAGACGTAAATGCGTGAGGGATCATCGTGCGGTCGCCGACG
ATTGCGCGGGGATTCATGGGTGGGTTAAAAAATATCGTGGGCGGCCAGAT
TGGCGCCTATACCGAGATGTGCGAACAGGCCCGGCAGCAGGCCTATGATT
TGTTAATTGCCCACGCCCGCGAACTGGGAGCGAATGCGATTGTTGGTCTG
CGCTACGATGCCTCGGAAGTGGTCAGCAAAGGCTCGGCGACAGAAGTGCT
ATGTTATGGAACGGCGGTGGTAATTGAACCTGTTGGAGACGTAAATGCGT
GA
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