mRNA_M-pyrifera_M_contig126879.5408.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126879.5408.1
Unique NamemRNA_M-pyrifera_M_contig126879.5408.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A251T208_HELAN (Cysteine protease n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T208_HELAN)

HSP 1 Score: 67.8 bits (164), Expect = 9.270e-12
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN I  + ++ +DPSL IGFYCR+  DFD FC+ A E  ++  G  LF + QSR
Sbjct:  297 SYHCNVIRQIPLESIDPSLAIGFYCRDKDDFDDFCSRASELAAESNGAPLFTVTQSR 353
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: U5D485_AMBTC (Cysteine protease n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5D485_AMBTC)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-11
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSRP 174
            +YHCN +  M    +DPSL IGFYCR+  DF+ FCT A E  S   G  LF +  S+P
Sbjct:  392 SYHCNVVRQMPFDTIDPSLAIGFYCRDKDDFEDFCTRAAEIASNSNGAPLFTVTNSKP 449
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A1S2XQG9_CICAR (Cysteine protease n=3 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XQG9_CICAR)

HSP 1 Score: 67.0 bits (162), Expect = 1.860e-11
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN I  M +  +DPSL IGFYCR+  DFD FC+ A +   +  G  LF +AQSR
Sbjct:  391 SYHCNIIRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRASKLAEESNGAPLFTVAQSR 447
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A0A9PF64_ARUDO (Cysteine protease n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PF64_ARUDO)

HSP 1 Score: 62.8 bits (151), Expect = 3.370e-11
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQS 168
            +YHC+ +  +++  +DPSL IGFYCRN  DFD FC  A E   +  G  LF + QS
Sbjct:   16 SYHCSIVRDLALDQIDPSLAIGFYCRNKDDFDDFCARASELVEKANGAPLFTVVQS 71
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A251U325_HELAN (Cysteine protease n=3 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251U325_HELAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.540e-11
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN I  + ++ +DPSL IGFYCR+  DFD FC+ A E  ++  G  LF I ++R
Sbjct:  302 SYHCNVIRQIPLESIDPSLAIGFYCRDKDDFDDFCSRASELATESNGAPLFTITEAR 358
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A2U1LZD7_ARTAN (Cysteine protease n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LZD7_ARTAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.750e-11
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN I  + ++ +DPSL IGFYCR+  DFD FC  A E  ++  G  LF + Q+R
Sbjct:  389 SYHCNVIRQIPLESIDPSLAIGFYCRDKDDFDDFCLRASELAAESNGAPLFTVTQTR 445
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: A0A2Z6ZZA7_9LAMI (Cysteine protease n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z6ZZA7_9LAMI)

HSP 1 Score: 62.4 bits (150), Expect = 6.410e-11
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN +  M +  +D SL IGFYC++ RDFD FC+ A E      G  LF I+++R
Sbjct:   23 SYHCNIVRHMPLDSIDSSLAIGFYCKDKRDFDDFCSRASELMDHSNGAPLFTISETR 79
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: UPI000C1CE157 (cysteine protease ATG4-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE157)

HSP 1 Score: 65.1 bits (157), Expect = 8.550e-11
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN +  M +  +DPSL IGFYCR+  DFD FC    E  SQ  G  LF I ++R
Sbjct:  299 SYHCNVVRHMPLDSVDPSLAIGFYCRDKNDFDDFCLRTSELISQSNGAPLFTITETR 355
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BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: ATG4_MEDTR (Cysteine protease ATG4 n=14 Tax=Trifolieae TaxID=163742 RepID=ATG4_MEDTR)

HSP 1 Score: 65.1 bits (157), Expect = 8.880e-11
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN    M +  +DPSL IGFYCR+  DFD FC+ A +   +  G  LF +AQSR
Sbjct:  390 SYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESNGAPLFTVAQSR 446
[Close]
BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Match: I3SYJ4_LOTJA (Cysteine protease n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SYJ4_LOTJA)

HSP 1 Score: 65.1 bits (157), Expect = 8.880e-11
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 TYHCNAIHMMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSR 171
            +YHCN +  M +  +DPSL IGFYCR+  DFD FC+ A +   +  G  LF +AQ R
Sbjct:  391 SYHCNIVRQMPLDSIDPSLAIGFYCRDKDDFDDFCSRASKLAEESNGAPLFTVAQFR 447
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126879.5408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251T208_HELAN9.270e-1249.12Cysteine protease n=1 Tax=Helianthus annuus TaxID=... [more]
U5D485_AMBTC1.360e-1148.28Cysteine protease n=2 Tax=Amborella trichopoda Tax... [more]
A0A1S2XQG9_CICAR1.860e-1150.88Cysteine protease n=3 Tax=Cicer arietinum TaxID=38... [more]
A0A0A9PF64_ARUDO3.370e-1146.43Cysteine protease n=1 Tax=Arundo donax TaxID=35708... [more]
A0A251U325_HELAN4.540e-1147.37Cysteine protease n=3 Tax=Heliantheae alliance Tax... [more]
A0A2U1LZD7_ARTAN4.750e-1147.37Cysteine protease n=1 Tax=Artemisia annua TaxID=35... [more]
A0A2Z6ZZA7_9LAMI6.410e-1145.61Cysteine protease n=1 Tax=Dorcoceras hygrometricum... [more]
UPI000C1CE1578.550e-1149.12cysteine protease ATG4-like n=1 Tax=Olea europaea ... [more]
ATG4_MEDTR8.880e-1149.12Cysteine protease ATG4 n=14 Tax=Trifolieae TaxID=1... [more]
I3SYJ4_LOTJA8.880e-1147.37Cysteine protease n=1 Tax=Lotus japonicus TaxID=34... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126879contigM-pyrifera_M_contig126879:285..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.4966354-CDS-M-pyrifera_M_contig126879:284..4491622815782.4966354-CDS-M-pyrifera_M_contig126879:284..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126879 285..449 -
1692277566.9906716-CDS-M-pyrifera_M_contig126879:284..4491692277566.9906716-CDS-M-pyrifera_M_contig126879:284..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126879 285..449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.5066226-UTR-M-pyrifera_M_contig126879:449..4731622815782.5066226-UTR-M-pyrifera_M_contig126879:449..473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126879 450..473 -
1692277567.001136-UTR-M-pyrifera_M_contig126879:449..4731692277567.001136-UTR-M-pyrifera_M_contig126879:449..473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126879 450..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126879.5408.1prot_M-pyrifera_M_contig126879.5408.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126879 285..449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126879.5408.1

>prot_M-pyrifera_M_contig126879.5408.1 ID=prot_M-pyrifera_M_contig126879.5408.1|Name=mRNA_M-pyrifera_M_contig126879.5408.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MMSVKDLDPSLTIGFYCRNSRDFDAFCTNAIEAESQMGGTHLFGIAQSRP
EYGSS
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mRNA from alignment at M-pyrifera_M_contig126879:285..473-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126879.5408.1 ID=mRNA_M-pyrifera_M_contig126879.5408.1|Name=mRNA_M-pyrifera_M_contig126879.5408.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig126879:285..473- (Macrocystis pyrifera P11B4 male)
ACCTATCATTGCAACGCTATCCACATGATGTCGGTCAAGGACCTGGACCC
CTCGCTCACCATTGGCTTCTACTGCCGTAACTCCCGTGATTTCGACGCTT
TCTGCACCAATGCAATTGAGGCAGAGAGTCAAATGGGAGGCACACACCTT
TTTGGCATCGCACAATCTCGGCCCGAGTACGGAAGCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126879:285..473-

>mRNA_M-pyrifera_M_contig126879.5408.1 ID=mRNA_M-pyrifera_M_contig126879.5408.1|Name=mRNA_M-pyrifera_M_contig126879.5408.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig126879:285..473- (Macrocystis pyrifera P11B4 male)
ATGATGTCGGTCAAGGACCTGGACCCCTCGCTCACCATTGGCTTCTACTG
CCGTAACTCCCGTGATTTCGACGCTTTCTGCACCAATGCAATTGAGGCAG
AGAGTCAAATGGGAGGCACACACCTTTTTGGCATCGCACAATCTCGGCCC
GAGTACGGAAGCTCTATGATGTCGGTCAAGGACCTGGACCCCTCGCTCAC
CATTGGCTTCTACTGCCGTAACTCCCGTGATTTCGACGCTTTCTGCACCA
ATGCAATTGAGGCAGAGAGTCAAATGGGAGGCACACACCTTTTTGGCATC
GCACAATCTCGGCCCGAGTACGGAAGCTCT
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