mRNA_M-pyrifera_M_contig126864.5405.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126864.5405.1
Unique NamemRNA_M-pyrifera_M_contig126864.5405.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A8H6SX51_9AGAR (Snare domain containing protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6SX51_9AGAR)

HSP 1 Score: 60.8 bits (146), Expect = 7.560e-9
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 TRYEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMP-PKTRCLG--RS-ADPKFLERRRTGLELFLRQSLGLAGVLRDDRVRE 252
            T YEI VK     WS++RRYS F  L R +R    + P  P P    L   RS +DPK LE RRTGLEL+LR  L      +DD+ RE
Sbjct:  298 TVYEIKVKANIRDWSIWRRYSEFDDLDRALRDATHEAPPAPLPSKHSLSIFRSHSDPKLLEERRTGLELYLRAILSA----KDDKWRE 381          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A7G3AU52_LUTLO (Putative nischarin modulator of integrin alpha5 subunit action (Fragment) n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AU52_LUTLO)

HSP 1 Score: 55.1 bits (131), Expect = 6.580e-7
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 TRYEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSL 213
            T YEI VK G ++W +FRRY  F  L+  + S  S    + P  + +G + +P F+E+R+ GLE +LR+ L
Sbjct:   33 TLYEIEVKIGDVSWRLFRRYREFQELHEKLVSERSVAKDLLPPKKVIG-NRNPAFVEKRKAGLEKYLREVL 102          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: UPI00083BE1EC (nischarin n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BE1EC)

HSP 1 Score: 53.5 bits (127), Expect = 2.780e-6
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 TRYEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSL 213
            T Y IN+  G + W+V  RY  F+AL++ + S H       P  R L R+  P F+E+RR GLE +LR +L
Sbjct:   25 THYRINMSVGKVQWTVLHRYREFYALHQTLVSEHGLAQDQLPPKRLL-RNKCPYFIEKRRHGLEQYLRYTL 94          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A6B2EBX2_9DIPT (Putative nischarin modulator of integrin alpha5 subunit action n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EBX2_9DIPT)

HSP 1 Score: 53.1 bits (126), Expect = 3.810e-6
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 TRYEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSL 213
            T+YEI +K G ++W VF RY  F  L+  + S  S    + P  + +G + +P F+E+R+ GLE +LR+ L
Sbjct:   25 TQYEIVMKIGEVSWRVFHRYRDFQELHEKLVSDRSVSKDLLPPKKVIG-NRNPAFVEKRKAGLEKYLREML 94          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A1B6JWI9_9HEMI (PX domain-containing protein (Fragment) n=2 Tax=Homalodisca TaxID=139475 RepID=A0A1B6JWI9_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 6.990e-6
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 YEINVKCGYIAWSVFRRYSRFHALYRHVRSGHS-DIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFL 258
            YEI V+ G ++W V  RYS F  L+  +   H  +  ++PPK + LG+  DP F+E+RRTGLE +LR  +          + EFL
Sbjct:   27 YEILVQVGTVSWKVTHRYSDFVNLHDKLVIDHCVNKEILPPK-KILGKR-DPAFVEKRRTGLECYLRSVITFLKETMPRTLAEFL 109          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A7C8ICE5_9PLEO (PXA domain-containing protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8ICE5_9PLEO)

HSP 1 Score: 52.4 bits (124), Expect = 7.510e-6
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1
Query:   37 AWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFL 258
            AW V RRYS FH L + +R+    +  M    R +       FL++RR GLE +LR+ L +  V R   +R FL
Sbjct:  907 AWVVTRRYSEFHELNKRLRTKFPQVRTMEFPRRQMVLKLQKDFLQKRRLGLEKYLRELLTIPAVCRSRELRSFL 980          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A2C5YF97_9HYPO (Uncharacterized protein n=2 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5YF97_9HYPO)

HSP 1 Score: 51.6 bits (122), Expect = 1.400e-5
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   37 AWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFL 258
            +W V RRYS FH L++ +RS ++ +  +    R +      +FL +RRT LE++LR+ L L    R   +R FL
Sbjct:  942 SWIVTRRYSEFHNLHQQLRSRYASVRNLDFPRRRMVMKFQSEFLRKRRTALEMYLRELLLLPEACRSRELRAFL 1015          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A0C2XMH5_AMAMK (Uncharacterized protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2XMH5_AMAMK)

HSP 1 Score: 51.2 bits (121), Expect = 1.770e-5
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query:    7 YEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPV--MPPKTR-CLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVRE------FLGI 264
            Y I ++    +W ++RRYS F  L+  +       P   +PPK R  L RS D K LE+R+ GLE +LR  L      ++DR RE      FLGI
Sbjct:   24 YRIEIQAHVRSWQMWRRYSEFDDLHADLIKSTGSAPPCELPPKHRFALLRSRDTKILEKRKAGLEQYLRAILSA----KEDRWRESLAFRDFLGI 114          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A6J1SX85_FRAOC (sorting nexin-24-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SX85_FRAOC)

HSP 1 Score: 50.1 bits (118), Expect = 1.790e-5
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    7 YEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMPPK-TRCLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFLGI 264
            Y ++V+ G     V +RYS+FH+L+R +R      P  PPK  RC    + P+ LE+RR GLEL+LR +L         ++  FLG+
Sbjct:   24 YTVDVQVGGRHRCVEKRYSQFHSLHRQLRK-EFQTPSFPPKRVRC----SQPRLLEQRRRGLELYLR-TLFQQSASCQSQILTFLGL 104          
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Match: A0A6A6V7M3_9PLEO (Uncharacterized protein n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V7M3_9PLEO)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-5
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   37 AWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRSADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFL 258
            AW V RRYS FH L++ +R+  + +  +    R +       FL++RR GLE +LR+ L +  V R   +R FL
Sbjct:  902 AWVVTRRYSEFHELHKRLRAKFAPVRNLELPRRQMMLKLQKDFLQKRRLGLEKYLRELLLIPAVCRSRELRAFL 975          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126864.5405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A8H6SX51_9AGAR7.560e-946.59Snare domain containing protein n=1 Tax=Mycena ind... [more]
A0A7G3AU52_LUTLO6.580e-739.44Putative nischarin modulator of integrin alpha5 su... [more]
UPI00083BE1EC2.780e-640.85nischarin n=1 Tax=Nicrophorus vespilloides TaxID=1... [more]
A0A6B2EBX2_9DIPT3.810e-638.03Putative nischarin modulator of integrin alpha5 su... [more]
A0A1B6JWI9_9HEMI6.990e-638.82PX domain-containing protein (Fragment) n=2 Tax=Ho... [more]
A0A7C8ICE5_9PLEO7.510e-637.84PXA domain-containing protein n=1 Tax=Massariospha... [more]
A0A2C5YF97_9HYPO1.400e-536.49Uncharacterized protein n=2 Tax=Ophiocordyceps aus... [more]
A0A0C2XMH5_AMAMK1.770e-537.89Uncharacterized protein n=1 Tax=Amanita muscaria (... [more]
A0A6J1SX85_FRAOC1.790e-537.93sorting nexin-24-like n=1 Tax=Frankliniella occide... [more]
A0A6A6V7M3_9PLEO1.920e-536.49Uncharacterized protein n=1 Tax=Sporormia fimetari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126864contigM-pyrifera_M_contig126864:235..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2e-10
Seed eggNOG ortholog67593.Physo138701
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoX homologous domain, present in p47phox and p40phox.
EggNOG OGs2E04G@1,2S7K4@2759,3QFDK@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.3929324-CDS-M-pyrifera_M_contig126864:234..4981622815782.3929324-CDS-M-pyrifera_M_contig126864:234..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126864 235..498 -
1692277566.9336345-CDS-M-pyrifera_M_contig126864:234..4981692277566.9336345-CDS-M-pyrifera_M_contig126864:234..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126864 235..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126864.5405.1prot_M-pyrifera_M_contig126864.5405.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126864 235..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126864.5405.1

>prot_M-pyrifera_M_contig126864.5405.1 ID=prot_M-pyrifera_M_contig126864.5405.1|Name=mRNA_M-pyrifera_M_contig126864.5405.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
TRYEINVKCGYIAWSVFRRYSRFHALYRHVRSGHSDIPVMPPKTRCLGRS
ADPKFLERRRTGLELFLRQSLGLAGVLRDDRVREFLGI
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mRNA from alignment at M-pyrifera_M_contig126864:235..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126864.5405.1 ID=mRNA_M-pyrifera_M_contig126864.5405.1|Name=mRNA_M-pyrifera_M_contig126864.5405.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig126864:235..498- (Macrocystis pyrifera P11B4 male)
ACCCGGTACGAGATCAATGTGAAGTGCGGCTACATCGCCTGGTCCGTCTT CCGCCGCTACTCGCGCTTCCACGCGCTGTACCGCCACGTGCGGTCGGGAC ACAGCGACATCCCCGTGATGCCGCCCAAGACCAGGTGTCTCGGTCGCTCC GCGGATCCAAAGTTCCTGGAGCGCAGGCGTACCGGGCTCGAGCTGTTCCT CCGCCAGTCCCTCGGCCTGGCCGGCGTGCTGCGCGACGACCGGGTGCGCG AGTTCCTCGGCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126864:235..498-

>mRNA_M-pyrifera_M_contig126864.5405.1 ID=mRNA_M-pyrifera_M_contig126864.5405.1|Name=mRNA_M-pyrifera_M_contig126864.5405.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig126864:235..498- (Macrocystis pyrifera P11B4 male)
ACCCGGTACGAGATCAATGTGAAGTGCGGCTACATCGCCTGGTCCGTCTT
CCGCCGCTACTCGCGCTTCCACGCGCTGTACCGCCACGTGCGGTCGGGAC
ACAGCGACATCCCCGTGATGCCGCCCAAGACCAGGTGTCTCGGTCGCTCC
GCGGATCCAAAGTTCCTGGAGCGCAGGCGTACCGGGCTCGAGCTGTTCCT
CCGCCAGTCCCTCGGCCTGGCCGGCGTGCTGCGCGACGACCGGGTGCGCG
AGTTCCTCGGCATCACCCGGTACGAGATCAATGTGAAGTGCGGCTACATC
GCCTGGTCCGTCTTCCGCCGCTACTCGCGCTTCCACGCGCTGTACCGCCA
CGTGCGGTCGGGACACAGCGACATCCCCGTGATGCCGCCCAAGACCAGGT
GTCTCGGTCGCTCCGCGGATCCAAAGTTCCTGGAGCGCAGGCGTACCGGG
CTCGAGCTGTTCCTCCGCCAGTCCCTCGGCCTGGCCGGCGTGCTGCGCGA
CGACCGGGTGCGCGAGTTCCTCGGCATC
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