mRNA_M-pyrifera_M_contig126854.5402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126854.5402.1
Unique NamemRNA_M-pyrifera_M_contig126854.5402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A1Y2G7V7_9FUNG (Nuclear pore glyco protein p62 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G7V7_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINRAQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKE 237
            RE+ +  AE+LN QLD+MS+ L  ++++IN+   +  G    PV QI++ILN HL +LQW+D  T+ L  K++E
Sbjct:  107 REQTYSLAENLNKQLDDMSLNLTNMIEEINQTSPKADGESNDPVGQIIQILNAHLTSLQWIDDSTTQLQSKVQE 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: S2JTB5_MUCC1 (Nsp1_C domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=S2JTB5_MUCC1)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-11
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 AAKDAREKAHKQAEDLNAQLDNMSIKLNALVDKINR---AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            AA + REKA+  AE LN QLD+++  LN +V++IN+   A+  T   D   V+QIV+ILN+HL +LQW+D H+  L +K++E  K
Sbjct:  458 AADEQREKAYGLAESLNCQLDDVNKNLNVMVEEINKMGNAKQATSNDDDDVVSQIVQILNSHLSSLQWIDTHSIQLQNKIQEVSK 542
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BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A8H7R7P2_9FUNG (Nsp1_C domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7R7P2_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 5.030e-11
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 AAKDAREKAHKQAEDLNAQLDNMSIKLNALVDKINR---AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            AA + REKA+  AE LN QLD+++  LN +V++IN+   A+  T   D   V QIV+ILN+HL +LQW+D H+  L +K++E  K
Sbjct:  435 AADEQREKAYGLAESLNCQLDDVNRNLNVMVEEINKMGNAKQATNNDDDDIVTQIVQILNSHLSSLQWIDTHSVQLQNKIQEVTK 519
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BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: L8H349_ACACA (Nuclear pore glycoprotein p62, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H349_ACACA)

HSP 1 Score: 67.0 bits (162), Expect = 6.910e-11
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINRAQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEKQFAQRKDEWDSTAR 288
            RE  +  AE++N+ LD M+  L   ++K+N A      +D +PV QIVEILN HLH+LQWV+ +++ LH KLK    QF   +D+ D   R
Sbjct:  474 RESGYALAEEINSDLDQMANTLKDHINKLNAAHTSAADSD-NPVYQIVEILNAHLHSLQWVEDNSNQLHSKLKTLRTQFKAHQDQQDHLRR 563
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A2G4T9G3_RHIZD (Uncharacterized protein n=2 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A2G4T9G3_RHIZD)

HSP 1 Score: 65.5 bits (158), Expect = 7.340e-11
Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINR--AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            REKA+  AE LN+QLD+++  LN +V++IN+     ++ G +   V QIV+ILN+HL +LQW+D H++ L +K++E  K
Sbjct:  125 REKAYGLAESLNSQLDDVNRNLNIMVEEINKMGTTKQSAGDEDDVVGQIVQILNSHLSSLQWIDTHSAKLQNKIQEVSK 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A0B7N4R0_9FUNG (Nsp1_C domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N4R0_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 1.760e-10
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 AAKDAREKAHKQAEDLNAQLDNMSIKLNALVDKINR---AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            AA + REKA+  AE LN+QLD+++  LN +V++IN+   A+      D+  V QIV+ILN+HL +LQW+D H+  L +K++E  K
Sbjct:  459 AADEQREKAYGLAESLNSQLDDVNKNLNIMVEEINKMGNAKQVANNDDEDIVTQIVQILNSHLSSLQWIDTHSIQLQNKIQEVSK 543
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A1X0RIK1_RHIZD (Nsp1_C domain-containing protein n=2 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RIK1_RHIZD)

HSP 1 Score: 65.5 bits (158), Expect = 2.370e-10
Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINR--AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            REKA+  AE LN+QLD+++  LN +V++IN+     ++ G +   V QIV+ILN+HL +LQW+D H++ L +K++E  K
Sbjct:  400 REKAYGLAESLNSQLDDVNRNLNIMVEEINKMGTTKQSAGDEDDVVGQIVQILNSHLSSLQWIDTHSAKLQNKIQEVSK 478
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: I1C636_RHIO9 (Nsp1_C domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1C636_RHIO9)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-9
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINR--AQARTGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            REKA+  AE LN+QLD+++  LN +V++INR  +  +    +   V QIV+ILN+HL +LQW+D H++ L  K++E  K
Sbjct:  408 REKAYGLAESLNSQLDDVNRNLNIMVEEINRMGSSKQASADEDDVVGQIVQILNSHLSSLQWIDTHSTELQAKIQEVSK 486
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A8H7V2H6_9FUNG (Nsp1_C domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7V2H6_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-9
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINRAQAR-----TGGTDQSPVNQIVEILNTHLHALQWVDQHTSVLHDKLKEAEK 246
            RE+A+  AE LNAQLD+++  LN +V++IN+  +      T   D   V QIV+ILN+HL +LQW+D H+  L +K++E  K
Sbjct:  514 RERAYGMAESLNAQLDDVNRNLNVMVEEINKMGSSQQLSTTDENDDDVVGQIVQILNSHLSSLQWIDTHSIDLQNKIQEVSK 595
[Close]
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Match: A0A197JZ33_9FUNG (Nsp1_C domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZ33_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 7.490e-9
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   16 REKAHKQAEDLNAQLDNMSIKLNALVDKINRAQARTGGTDQSPV------NQIVEILNTHLHALQWVDQHTSVLHDKLKE 237
            RE+ +  AE+LN QLD+MS+ L +++++IN+   +T G    PV      NQIV+IL++HL +LQW++  T  L  K+++
Sbjct:  107 REQTYSLAENLNKQLDDMSLNLTSMIEEINQTSTKTEGESGDPVSFTLWVNQIVQILDSHLASLQWIEDSTISLQSKVQD 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126854.5402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2G7V7_9FUNG1.650e-1143.24Nuclear pore glyco protein p62 n=1 Tax=Lobosporang... [more]
S2JTB5_MUCC11.980e-1145.88Nsp1_C domain-containing protein n=4 Tax=Mucor Tax... [more]
A0A8H7R7P2_9FUNG5.030e-1145.88Nsp1_C domain-containing protein n=1 Tax=Mucor plu... [more]
L8H349_ACACA6.910e-1142.86Nuclear pore glycoprotein p62, putative n=1 Tax=Ac... [more]
A0A2G4T9G3_RHIZD7.340e-1144.30Uncharacterized protein n=2 Tax=Rhizopus microspor... [more]
A0A0B7N4R0_9FUNG1.760e-1044.71Nsp1_C domain-containing protein n=1 Tax=Parasitel... [more]
A0A1X0RIK1_RHIZD2.370e-1044.30Nsp1_C domain-containing protein n=2 Tax=Rhizopus ... [more]
I1C636_RHIO91.130e-944.30Nsp1_C domain-containing protein n=1 Tax=Rhizopus ... [more]
A0A8H7V2H6_9FUNG1.570e-943.90Nsp1_C domain-containing protein n=1 Tax=Mucor sat... [more]
A0A197JZ33_9FUNG7.490e-940.00Nsp1_C domain-containing protein n=1 Tax=Linnemann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126854contigM-pyrifera_M_contig126854:86..373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue9.9e-11
Seed eggNOG ortholog36080.S2JTB5
Preferred nameNSP1
KEGG koko:K14306
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000056,GO:0003674,GO:0005198,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0017038,GO:0017056,GO:0022613,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034399,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051031,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0097064,GO:1901987,GO:1901990,GO:1902749
EggNOG free text desc.Nsp1-like C-terminal region
EggNOG OGs1GWI4@112252,38HQQ@33154,3NWME@4751,KOG2196@1,KOG2196@2759
COG Functional cat.Y
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.2746282-CDS-M-pyrifera_M_contig126854:85..3731622815782.2746282-CDS-M-pyrifera_M_contig126854:85..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126854 86..373 -
1692277566.866295-CDS-M-pyrifera_M_contig126854:85..3731692277566.866295-CDS-M-pyrifera_M_contig126854:85..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126854 86..373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126854.5402.1prot_M-pyrifera_M_contig126854.5402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126854 86..373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126854.5402.1

>prot_M-pyrifera_M_contig126854.5402.1 ID=prot_M-pyrifera_M_contig126854.5402.1|Name=mRNA_M-pyrifera_M_contig126854.5402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
AAKDAREKAHKQAEDLNAQLDNMSIKLNALVDKINRAQARTGGTDQSPVN
QIVEILNTHLHALQWVDQHTSVLHDKLKEAEKQFAQRKDEWDSTAR
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mRNA from alignment at M-pyrifera_M_contig126854:86..373-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126854.5402.1 ID=mRNA_M-pyrifera_M_contig126854.5402.1|Name=mRNA_M-pyrifera_M_contig126854.5402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig126854:86..373- (Macrocystis pyrifera P11B4 male)
GCCGCCAAGGATGCCCGTGAGAAGGCTCACAAGCAAGCCGAAGACCTGAA
TGCTCAGCTGGACAACATGTCCATCAAGCTGAACGCCCTGGTGGACAAGA
TCAACAGAGCCCAGGCGCGGACCGGCGGCACCGACCAGAGTCCCGTCAAC
CAGATCGTGGAGATCCTCAACACGCATCTCCATGCGCTGCAGTGGGTGGA
CCAGCACACTTCGGTGCTGCACGACAAGCTGAAGGAGGCCGAGAAGCAGT
TCGCCCAGCGCAAGGACGAGTGGGACAGCACTGCTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126854:86..373-

>mRNA_M-pyrifera_M_contig126854.5402.1 ID=mRNA_M-pyrifera_M_contig126854.5402.1|Name=mRNA_M-pyrifera_M_contig126854.5402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig126854:86..373- (Macrocystis pyrifera P11B4 male)
GCCGCCAAGGATGCCCGTGAGAAGGCTCACAAGCAAGCCGAAGACCTGAA
TGCTCAGCTGGACAACATGTCCATCAAGCTGAACGCCCTGGTGGACAAGA
TCAACAGAGCCCAGGCGCGGACCGGCGGCACCGACCAGAGTCCCGTCAAC
CAGATCGTGGAGATCCTCAACACGCATCTCCATGCGCTGCAGTGGGTGGA
CCAGCACACTTCGGTGCTGCACGACAAGCTGAAGGAGGCCGAGAAGCAGT
TCGCCCAGCGCAAGGACGAGTGGGACAGCACTGCTCGCGCCGCCAAGGAT
GCCCGTGAGAAGGCTCACAAGCAAGCCGAAGACCTGAATGCTCAGCTGGA
CAACATGTCCATCAAGCTGAACGCCCTGGTGGACAAGATCAACAGAGCCC
AGGCGCGGACCGGCGGCACCGACCAGAGTCCCGTCAACCAGATCGTGGAG
ATCCTCAACACGCATCTCCATGCGCTGCAGTGGGTGGACCAGCACACTTC
GGTGCTGCACGACAAGCTGAAGGAGGCCGAGAAGCAGTTCGCCCAGCGCA
AGGACGAGTGGGACAGCACTGCTCGC
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