mRNA_M-pyrifera_M_contig126852.5401.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126852.5401.1
Unique NamemRNA_M-pyrifera_M_contig126852.5401.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126852.5401.1 vs. uniprot
Match: UPI001E1D7FE3 (RAD50-interacting protein 1 isoform X3 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D7FE3)

HSP 1 Score: 70.9 bits (172), Expect = 1.470e-11
Identity = 41/139 (29.50%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:    7 VQPLLNAEGLTTWDAAEEFAKAVVGMVREKIGHDLPELLYRRQDLFCNTLMECCAFDKTLVEIYGYSPENWNAVQAFASTDRLLEQWLSIEYAGGEEQFSSTVSAKDAWLLQYPSFSDADPVRHSRSAEALVEHVASLT 423
            +QP+L+  G    +A  EF++ +V +V EK+G D+P LLY   +LFC+ + E   F++ L   +GY P  +       S +   ++WL++E     ++  S +S++ AW+ QY   +D D ++    AE  +  +  +T
Sbjct:  355 IQPILDKAGSLV-NARLEFSRGLVMLVLEKLGADIPCLLYD-DNLFCHLVDEVLLFERELHSAHGY-PGTFANCMHILSEETCFQRWLTVERKFALQKMDSMLSSEAAWVSQYKDITDVDEMKVPDCAETFMTLLLVIT 490
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BLAST of mRNA_M-pyrifera_M_contig126852.5401.1 vs. uniprot
Match: A0A2P6NA99_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NA99_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 5.200e-11
Identity = 42/160 (26.25%), Postives = 75/160 (46.88%), Query Frame = 1 
Query:    7 VQPLLNAEGLTTWDAAEEFAKAVVGMVREKIGHDLPELLYRRQDLFCNTLMECCAFDKTLVEIYGY---SPENWN------------------AVQAFASTDRLLEQWLSIEYAGGEEQFSSTVSAKDAWLLQYPS-FSDADPVRHSRSAEALVEHVASL 420
            VQP+L+   ++ +DA EEF K +V ++  K+ HD+P+ L     +F +T+ E   F+KTL +I+ Y    P+ W+                   ++     DR+ + W+  E      Q +  +  ++ W  ++   FSD D      S   + +H+ASL
Sbjct:  314 VQPILDKNAMSYYDAKEEFIKGLVRVINTKLRHDIPQRLLSNPSVFYHTINEAIQFEKTLQDIHEYPQHQPDLWSQNRSKSTASSSDLYDNITVLEVLTEDDRVFDAWIREEALYLRRQMNEEMKEEEMWKSRFSEGFSDID----HWSIPLVTDHLASL 469
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BLAST of mRNA_M-pyrifera_M_contig126852.5401.1 vs. uniprot
Match: A0A0B6ZWY6_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZWY6_9EUPU)

HSP 1 Score: 67.4 bits (163), Expect = 2.440e-10
Identity = 40/140 (28.57%), Postives = 66/140 (47.14%), Query Frame = 1 
Query:    4 HVQPLLNAEGLTTWDAAEEFAKAVVGMVREKIGHDLPELLYRRQDLFCNTLMECCAFDKTLVEIYGYSPENWNAVQAFASTDRLLEQWLSIEYAGGEEQFSSTVSAKDAWLLQYPSFSDADPVRHSRSAEALVEHVASLT 423
            ++QPLL+  G     A  E  + +V MV EKIGHDLP+L++   + F + + E   FD  +   Y Y P     +    S    L +WL +E     ++    + +   W  QY   +D D V+    AE+ +  + ++T
Sbjct:  290 NIQPLLDESGRRDVCARTELTRGLVMMVMEKIGHDLPQLVFDEAN-FSHLIDEVLLFDSEIRNTYSYPPILPGCLDVL-SLPEALTKWLVMEQKFAMQKIEQMLQSPSCWESQYKGITDLDEVKVPECAESFMTLLHTIT 427
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BLAST of mRNA_M-pyrifera_M_contig126852.5401.1 vs. uniprot
Match: A0A2C9K3C0_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K3C0_BIOGL)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-9
Identity = 38/140 (27.14%), Postives = 65/140 (46.43%), Query Frame = 1 
Query:    4 HVQPLLNAEGLTTWDAAEEFAKAVVGMVREKIGHDLPELLYRRQDLFCNTLMECCAFDKTLVEIYGYSPENWNAVQAFASTDRLLEQWLSIEYAGGEEQFSSTVSAKDAWLLQYPSFSDADPVRHSRSAEALVEHVASLT 423
            ++QP+L+  G     A  E  + +V +V EKIG DLP+L+Y    L  + + E   FD  +   Y Y P     +      + L + WL +E     ++    + +   W  QY S  D+D V+    AE+ +  + ++T
Sbjct:  279 NIQPILDETGKANICARTELTRGLVMLVMEKIGQDLPQLVYDESSL-SHLIDEVLLFDSEIRNTYSYPPMLPGCLDVLCLPEALTK-WLLVEKKYAMQKIEQMLQSPSCWESQYKSVEDSDEVKVPECAESFMTLLHTMT 416
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126852.5401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001E1D7FE31.470e-1129.50RAD50-interacting protein 1 isoform X3 n=1 Tax=Ech... [more]
A0A2P6NA99_9EUKA5.200e-1126.25Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0B6ZWY6_9EUPU2.440e-1028.57Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
A0A2C9K3C0_BIOGL2.120e-927.14Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126852contigM-pyrifera_M_contig126852:86..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog10224.XP_006814775.1
Preferred nameRINT1
KEGG koko:K20474
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006810,GO:0006890,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0007346,GO:0008150,GO:0009966,GO:0009987,GO:0010256,GO:0010324,GO:0010389,GO:0010564,GO:0010646,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0031984,GO:0032386,GO:0032501,GO:0032504,GO:0032506,GO:0032879,GO:0032991,GO:0033206,GO:0036090,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048193,GO:0048232,GO:0048285,GO:0048583,GO:0048609,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051704,GO:0051726,GO:0060341,GO:0060627,GO:0060628,GO:0061024,GO:0061640,GO:0065007,GO:0070939,GO:0071840,GO:0080134,GO:0080135,GO:0098827,GO:0099023,GO:0099024,GO:0140013,GO:1901976,GO:1901987,GO:1901990,GO:1902504,GO:1902531,GO:1902749,GO:1903046,GO:1904289,GO:2000001,GO:2001020
EggNOG free text desc.RAD50 interactor 1
EggNOG OGs38E05@33154,3BAVV@33208,3CWX2@33213,KOG2218@1,KOG2218@2759
COG Functional cat.DU
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.2347915-CDS-M-pyrifera_M_contig126852:85..5081622815782.2347915-CDS-M-pyrifera_M_contig126852:85..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126852 86..508 -
1692277566.8528728-CDS-M-pyrifera_M_contig126852:85..5081692277566.8528728-CDS-M-pyrifera_M_contig126852:85..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126852 86..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126852.5401.1prot_M-pyrifera_M_contig126852.5401.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126852 86..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126852.5401.1

>prot_M-pyrifera_M_contig126852.5401.1 ID=prot_M-pyrifera_M_contig126852.5401.1|Name=mRNA_M-pyrifera_M_contig126852.5401.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VHVQPLLNAEGLTTWDAAEEFAKAVVGMVREKIGHDLPELLYRRQDLFCN
TLMECCAFDKTLVEIYGYSPENWNAVQAFASTDRLLEQWLSIEYAGGEEQ
FSSTVSAKDAWLLQYPSFSDADPVRHSRSAEALVEHVASLT
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mRNA from alignment at M-pyrifera_M_contig126852:86..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126852.5401.1 ID=mRNA_M-pyrifera_M_contig126852.5401.1|Name=mRNA_M-pyrifera_M_contig126852.5401.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig126852:86..508- (Macrocystis pyrifera P11B4 male)
GTGCATGTGCAGCCTCTTCTCAACGCAGAAGGCCTCACCACCTGGGACGC
AGCAGAGGAGTTTGCCAAGGCAGTGGTGGGGATGGTGCGCGAGAAAATAG
GCCACGACCTACCAGAACTGCTATACAGGAGGCAAGACCTCTTCTGCAAC
ACCCTCATGGAGTGCTGTGCCTTCGACAAGACTCTCGTGGAGATCTATGG
CTACTCACCTGAGAACTGGAATGCCGTGCAGGCGTTCGCCTCCACTGACC
GCCTCCTCGAGCAGTGGCTCAGCATAGAGTACGCAGGCGGCGAGGAGCAG
TTCAGCAGCACTGTGTCTGCCAAGGACGCCTGGCTCCTTCAGTATCCTTC
CTTCTCCGACGCCGACCCTGTGCGTCACTCGCGATCCGCTGAGGCTCTGG
TAGAGCACGTGGCATCACTCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126852:86..508-

>mRNA_M-pyrifera_M_contig126852.5401.1 ID=mRNA_M-pyrifera_M_contig126852.5401.1|Name=mRNA_M-pyrifera_M_contig126852.5401.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig126852:86..508- (Macrocystis pyrifera P11B4 male)
GTGCATGTGCAGCCTCTTCTCAACGCAGAAGGCCTCACCACCTGGGACGC
AGCAGAGGAGTTTGCCAAGGCAGTGGTGGGGATGGTGCGCGAGAAAATAG
GCCACGACCTACCAGAACTGCTATACAGGAGGCAAGACCTCTTCTGCAAC
ACCCTCATGGAGTGCTGTGCCTTCGACAAGACTCTCGTGGAGATCTATGG
CTACTCACCTGAGAACTGGAATGCCGTGCAGGCGTTCGCCTCCACTGACC
GCCTCCTCGAGCAGTGGCTCAGCATAGAGTACGCAGGCGGCGAGGAGCAG
TTCAGCAGCACTGTGTCTGCCAAGGACGCCTGGCTCCTTCAGTATCCTTC
CTTCTCCGACGCCGACCCTGTGCGTCACTCGCGATCCGCTGAGGCTCTGG
TAGAGCACGTGGCATCACTCACTGTGCATGTGCAGCCTCTTCTCAACGCA
GAAGGCCTCACCACCTGGGACGCAGCAGAGGAGTTTGCCAAGGCAGTGGT
GGGGATGGTGCGCGAGAAAATAGGCCACGACCTACCAGAACTGCTATACA
GGAGGCAAGACCTCTTCTGCAACACCCTCATGGAGTGCTGTGCCTTCGAC
AAGACTCTCGTGGAGATCTATGGCTACTCACCTGAGAACTGGAATGCCGT
GCAGGCGTTCGCCTCCACTGACCGCCTCCTCGAGCAGTGGCTCAGCATAG
AGTACGCAGGCGGCGAGGAGCAGTTCAGCAGCACTGTGTCTGCCAAGGAC
GCCTGGCTCCTTCAGTATCCTTCCTTCTCCGACGCCGACCCTGTGCGTCA
CTCGCGATCCGCTGAGGCTCTGGTAGAGCACGTGGCATCACTCACT
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