mRNA_M-pyrifera_M_contig126844.5399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126844.5399.1
Unique NamemRNA_M-pyrifera_M_contig126844.5399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126844.5399.1 vs. uniprot
Match: D5C0H8_NITHN (Phytanoyl-CoA dioxygenase n=1 Tax=Nitrosococcus halophilus (strain Nc4) TaxID=472759 RepID=D5C0H8_NITHN)

HSP 1 Score: 53.5 bits (127), Expect = 1.820e-6
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   31 VTEEVKEAYARDGFVLLRDVYTEEEMAAVEAAVDAMDKAEDVKGGVWKYYEDS-TDGEKKLLNRIEAFA 234
            +TEE  EA+ RDGFV++R  Y ++EMA ++  V+ +    D  G   +YYEDS  +  ++LLNR+E F+
Sbjct:    4 LTEEQIEAFERDGFVVVRGFYDDQEMAQIKHWVEEVQAYPDAPGKYQRYYEDSLAEPGQRLLNRMENFS 72
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BLAST of mRNA_M-pyrifera_M_contig126844.5399.1 vs. uniprot
Match: A0A7Y3B1H8_9GAMM (Phytanoyl-CoA dioxygenase family protein n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y3B1H8_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 3.530e-6
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   28 LVTEEVKEAYARDGFVLLRDVYTEEEMAAVEAAVDAMDKAEDVKGGVWKYYEDSTDGEKKLLNRIEAF 231
            ++TE+  E + RDGF+L+R +Y+ +E+A +    D +  + +V G  WKY+E S   ++++L RIE F
Sbjct:    6 VLTEQQVEQFQRDGFLLVRGMYSADEVADISRWTDQVAGSPEVPGRDWKYFERSRQNDERILCRIENF 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126844.5399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D5C0H8_NITHN1.820e-642.03Phytanoyl-CoA dioxygenase n=1 Tax=Nitrosococcus ha... [more]
A0A7Y3B1H8_9GAMM3.530e-636.76Phytanoyl-CoA dioxygenase family protein n=2 Tax=X... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126844contigM-pyrifera_M_contig126844:126..377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.1466198-CDS-M-pyrifera_M_contig126844:125..3771622815782.1466198-CDS-M-pyrifera_M_contig126844:125..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126844 126..377 -
1692277566.8012955-CDS-M-pyrifera_M_contig126844:125..3771692277566.8012955-CDS-M-pyrifera_M_contig126844:125..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126844 126..377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126844.5399.1prot_M-pyrifera_M_contig126844.5399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126844 126..377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126844.5399.1

>prot_M-pyrifera_M_contig126844.5399.1 ID=prot_M-pyrifera_M_contig126844.5399.1|Name=mRNA_M-pyrifera_M_contig126844.5399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MSVPDAVSLLVTEEVKEAYARDGFVLLRDVYTEEEMAAVEAAVDAMDKAE
DVKGGVWKYYEDSTDGEKKLLNRIEAFAFKVDAF
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mRNA from alignment at M-pyrifera_M_contig126844:126..377-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126844.5399.1 ID=mRNA_M-pyrifera_M_contig126844.5399.1|Name=mRNA_M-pyrifera_M_contig126844.5399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig126844:126..377- (Macrocystis pyrifera P11B4 male)
ATGTCCGTTCCTGATGCCGTGTCTTTGTTGGTGACCGAAGAGGTGAAGGA
GGCGTACGCCCGTGACGGGTTCGTGCTGCTGCGCGACGTGTACACTGAGG
AGGAGATGGCTGCGGTGGAAGCAGCGGTGGATGCGATGGACAAGGCAGAA
GACGTGAAGGGCGGAGTTTGGAAGTACTACGAGGATTCTACTGATGGTGA
AAAGAAGCTGCTGAACCGCATCGAGGCGTTCGCGTTCAAGGTGGACGCCT
TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126844:126..377-

>mRNA_M-pyrifera_M_contig126844.5399.1 ID=mRNA_M-pyrifera_M_contig126844.5399.1|Name=mRNA_M-pyrifera_M_contig126844.5399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig126844:126..377- (Macrocystis pyrifera P11B4 male)
ATGTCCGTTCCTGATGCCGTGTCTTTGTTGGTGACCGAAGAGGTGAAGGA
GGCGTACGCCCGTGACGGGTTCGTGCTGCTGCGCGACGTGTACACTGAGG
AGGAGATGGCTGCGGTGGAAGCAGCGGTGGATGCGATGGACAAGGCAGAA
GACGTGAAGGGCGGAGTTTGGAAGTACTACGAGGATTCTACTGATGGTGA
AAAGAAGCTGCTGAACCGCATCGAGGCGTTCGCGTTCAAGGTGGACGCCT
TCATGTCCGTTCCTGATGCCGTGTCTTTGTTGGTGACCGAAGAGGTGAAG
GAGGCGTACGCCCGTGACGGGTTCGTGCTGCTGCGCGACGTGTACACTGA
GGAGGAGATGGCTGCGGTGGAAGCAGCGGTGGATGCGATGGACAAGGCAG
AAGACGTGAAGGGCGGAGTTTGGAAGTACTACGAGGATTCTACTGATGGT
GAAAAGAAGCTGCTGAACCGCATCGAGGCGTTCGCGTTCAAGGTGGACGC
CTTC
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