mRNA_M-pyrifera_M_contig126819.5395.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126819.5395.1
Unique NamemRNA_M-pyrifera_M_contig126819.5395.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A7S3KID3_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KID3_EUPCR)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-18
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S  IW+ ++G+LD  FK +GV   YFP+ VTE+ALT E+D+ + F PEVAWVTRSG++EM
Sbjct:   92 RPWSYGIWERVQGFLDNLFKENGVENAYFPIFVTEKALTKEEDHLEGFAPEVAWVTRSGKTEM 154
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A078AL54_STYLE (Proline--tRNA ligase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AL54_STYLE)

HSP 1 Score: 87.0 bits (214), Expect = 1.580e-18
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S +IW++I+ YLD++FK  GV  CYFP+ VTE AL  EK++ + F PEVAWVT+SGQS++
Sbjct:   14 RPNSYFIWEQIQKYLDEQFKQEGVQNCYFPMFVTEAALNKEKNHIEGFAPEVAWVTKSGQSDL 76
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A7S3V1R3_9STRA (Proline--tRNA ligase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V1R3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.750e-18
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RPL+  IW+ I+ + D   K  GV PCYFP+ +++RAL TEKD+ + F PEVAWVTRSG SE+
Sbjct:   45 RPLAYRIWENIQNFFDAEIKELGVEPCYFPMFISQRALETEKDHVEGFAPEVAWVTRSGNSEL 107
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A077ZV44_STYLE (Proline--tRNA ligase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZV44_STYLE)

HSP 1 Score: 85.1 bits (209), Expect = 8.060e-18
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RPLS +IW+ I+ +LD RFK +GV  CYFP+ V+E AL+ EKD+   F PEVAWVT+SG++ +
Sbjct:  233 RPLSYFIWESIQNFLDPRFKKNGVSNCYFPMFVSEAALSKEKDHIAGFAPEVAWVTKSGKTNL 295
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: J9G4Y5_9SPIT (Proline--tRNA ligase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9G4Y5_9SPIT)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-17
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RPLS +IW+ I+G+LD RFK +GV  CYFP+ V+E AL+ E+++   F PEVAWVT+SG++++
Sbjct:  249 RPLSYFIWESIQGFLDPRFKRNGVQNCYFPMFVSEAALSKEQNHIAGFAPEVAWVTKSGKTDL 311
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: E1ZAQ3_CHLVA (Proline--tRNA ligase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZAQ3_CHLVA)

HSP 1 Score: 82.4 bits (202), Expect = 2.200e-17
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S  IWDEIK + D R K  GV   YFPL +TE  L TEK++ + F PEVAWVTRSG SE+
Sbjct:   90 RPYSFAIWDEIKNWFDARIKELGVQNAYFPLFITEDVLMTEKEHVEGFAPEVAWVTRSGSSEL 152
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A6B2G6M1_MYXSQ (Proline--tRNA ligase (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2G6M1_MYXSQ)

HSP 1 Score: 82.4 bits (202), Expect = 2.630e-17
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RPL+ +IW++I+G+ D   K  GV  CYFP+ V E AL  EK++ DDF PEVAWVTR+G +++
Sbjct:  166 RPLAYFIWEKIQGFFDLEIKKMGVENCYFPMFVPESALIKEKEHIDDFAPEVAWVTRAGNTDL 228
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: N0DPX5_ACYSU (Proline--tRNA ligase n=1 Tax=Acytostelium subglobosum TaxID=361139 RepID=N0DPX5_ACYSU)

HSP 1 Score: 83.6 bits (205), Expect = 2.730e-17
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S  IW++I+ + D   K  GV   YFPLLV+E+ALTTEKD+ + F PEVAWVT+SGQS++
Sbjct:   60 RPWSYNIWEQIQAFFDAEIKKLGVQNAYFPLLVSEKALTTEKDHIEGFAPEVAWVTKSGQSQL 122
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BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: Q69GU0_9ASCI (Proline--tRNA ligase (Fragment) n=1 Tax=Herdmania curvata TaxID=62068 RepID=Q69GU0_9ASCI)

HSP 1 Score: 80.1 bits (196), Expect = 3.050e-17
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S  IW+ IK + D   K  GV  CYFP+ V++ AL  EK++ +DF PEVAWVT+SGQSE+
Sbjct:   30 RPWSYGIWERIKAFFDTEIKKLGVENCYFPIFVSQSALEKEKEHIEDFAPEVAWVTKSGQSEL 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Match: A0A7S3W870_9SPIT (Proline--tRNA ligase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W870_9SPIT)

HSP 1 Score: 83.2 bits (204), Expect = 3.830e-17
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 RPLSMYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAWVTRSGQSEM 189
            RP S  IWD I+ +LD + K  GV  CYFP+ V+E  L  EKD+ +DF PEVAWVT+SGQS++
Sbjct:  231 RPWSYSIWDAIRDFLDSKIKSIGVQNCYFPMFVSEAKLQAEKDHIEDFAPEVAWVTKSGQSDL 293
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126819.5395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3KID3_EUPCR1.160e-1857.14Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A078AL54_STYLE1.580e-1857.14Proline--tRNA ligase n=1 Tax=Stylonychia lemnae Ta... [more]
A0A7S3V1R3_9STRA7.750e-1855.56Proline--tRNA ligase n=1 Tax=Aplanochytrium stocch... [more]
A0A077ZV44_STYLE8.060e-1855.56Proline--tRNA ligase n=1 Tax=Stylonychia lemnae Ta... [more]
J9G4Y5_9SPIT1.100e-1753.97Proline--tRNA ligase n=1 Tax=Oxytricha trifallax T... [more]
E1ZAQ3_CHLVA2.200e-1758.73Proline--tRNA ligase n=1 Tax=Chlorella variabilis ... [more]
A0A6B2G6M1_MYXSQ2.630e-1752.38Proline--tRNA ligase (Fragment) n=1 Tax=Myxobolus ... [more]
N0DPX5_ACYSU2.730e-1757.14Proline--tRNA ligase n=1 Tax=Acytostelium subglobo... [more]
Q69GU0_9ASCI3.050e-1753.97Proline--tRNA ligase (Fragment) n=1 Tax=Herdmania ... [more]
A0A7S3W870_9SPIT3.830e-1755.56Proline--tRNA ligase (Fragment) n=1 Tax=Strombidin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126819contigM-pyrifera_M_contig126819:116..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.1
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog6087.XP_004209126.1
Preferred nameEPRS
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004818,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.glutamate-tRNA ligase activity
EggNOG OGs38B44@33154,3BBW2@33208,COG0008@1,COG0442@1,KOG1147@2759,KOG4163@2759
EC6.1.1.15,6.1.1.17
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Exons1
Model size189
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.9860702-CDS-M-pyrifera_M_contig126819:115..2921622815781.9860702-CDS-M-pyrifera_M_contig126819:115..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126819 116..292 -
1692277566.728147-CDS-M-pyrifera_M_contig126819:115..2921692277566.728147-CDS-M-pyrifera_M_contig126819:115..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126819 116..292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.996336-UTR-M-pyrifera_M_contig126819:292..3041622815781.996336-UTR-M-pyrifera_M_contig126819:292..304Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126819 293..304 -
1692277566.7375236-UTR-M-pyrifera_M_contig126819:292..3041692277566.7375236-UTR-M-pyrifera_M_contig126819:292..304Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126819 293..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126819.5395.1prot_M-pyrifera_M_contig126819.5395.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126819 116..292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126819.5395.1

>prot_M-pyrifera_M_contig126819.5395.1 ID=prot_M-pyrifera_M_contig126819.5395.1|Name=mRNA_M-pyrifera_M_contig126819.5395.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MYIWDEIKGYLDKRFKLSGVLPCYFPLLVTERALTTEKDNFDDFCPEVAW
VTRSGQSEM
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mRNA from alignment at M-pyrifera_M_contig126819:116..304-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126819.5395.1 ID=mRNA_M-pyrifera_M_contig126819.5395.1|Name=mRNA_M-pyrifera_M_contig126819.5395.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig126819:116..304- (Macrocystis pyrifera P11B4 male)
CGACCGCTGTCGATGTACATCTGGGACGAGATCAAGGGCTACCTGGACAA
GCGCTTCAAGCTGTCGGGCGTGCTGCCCTGCTACTTCCCCCTGCTCGTCA
CCGAGCGCGCCCTCACCACCGAGAAGGACAACTTCGACGACTTCTGCCCC
GAGGTGGCCTGGGTGACCAGGTCGGGCCAGAGCGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126819:116..304-

>mRNA_M-pyrifera_M_contig126819.5395.1 ID=mRNA_M-pyrifera_M_contig126819.5395.1|Name=mRNA_M-pyrifera_M_contig126819.5395.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig126819:116..304- (Macrocystis pyrifera P11B4 male)
ATGTACATCTGGGACGAGATCAAGGGCTACCTGGACAAGCGCTTCAAGCT
GTCGGGCGTGCTGCCCTGCTACTTCCCCCTGCTCGTCACCGAGCGCGCCC
TCACCACCGAGAAGGACAACTTCGACGACTTCTGCCCCGAGGTGGCCTGG
GTGACCAGGTCGGGCCAGAGCGAGATGATGTACATCTGGGACGAGATCAA
GGGCTACCTGGACAAGCGCTTCAAGCTGTCGGGCGTGCTGCCCTGCTACT
TCCCCCTGCTCGTCACCGAGCGCGCCCTCACCACCGAGAAGGACAACTTC
GACGACTTCTGCCCCGAGGTGGCCTGGGTGACCAGGTCGGGCCAGAGCGA
GATG
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