mRNA_M-pyrifera_M_contig126809.5391.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126809.5391.1
Unique NamemRNA_M-pyrifera_M_contig126809.5391.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI00167FE9E0 (sensor histidine kinase n=1 Tax=Pedobacter sp. SW-16 TaxID=2766984 RepID=UPI00167FE9E0)

HSP 1 Score: 57.0 bits (136), Expect = 8.290e-7
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query:  106 NVYPIYEDHEGVIWAGILRAELVSIS--NSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKS 315
            N+  I +D EG IW G     L  ++  N   E+FN    +PS+   S +ED  N +W+GT  GL K+DRK+
Sbjct:  547 NINCIQQDSEGNIWLGTYHKGLALLNQRNKTFELFNYKNNLPSDNILSLVEDNQNNLWIGTDNGLVKYDRKA 618          
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI001ADA5544 (response regulator n=1 Tax=Niastella soli TaxID=2821487 RepID=UPI001ADA5544)

HSP 1 Score: 57.0 bits (136), Expect = 8.440e-7
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 FVDKTGALWFVSVGE--LHYIQRDTFGAYDMQTHNIENVYPIYEDHEGVIWAG----ILRAELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVG-LFKWDRKSNIKEVKPF---EDTELKFVRGLIKDRNGSIW 399
            F D    LW  + G   L+Y+ R+    ++M + ++ ++  IY+D +GV+WAG    ++R +     + + E+   + AI        LED A  MW+G   G L  +DR+S  K VK F   +      V  +++D NG++W
Sbjct:  468 FEDTNKVLWATTFGNGMLYYLNREK-DRFEMFSQHLVDLLSIYQDKDGVLWAGTAHDLIRIDRADKKHVRYEIGKPVRAI--------LEDRAGNMWIGAEGGGLILFDRQSG-KLVKRFTVKDGLSNNGVLNILEDGNGNLW 600          
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: A0A6N3B4Z1_9FIRM (Histidine kinase n=10 Tax=root TaxID=1 RepID=A0A6N3B4Z1_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 2.850e-6
Identity = 40/123 (32.52%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    4 VDKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVY--PIYEDHEGVIWAGILRAE---LVSISNSKAEVFNN----MEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKSNIKEVKPFED 345
            VD  G LW  ++  L  I  +T    DM  +     Y   IY+D+EG  + G+LR E    +++   K + F+N      +I SNR      D    +W+GTS G+ K+DRK+   E    ED
Sbjct:  464 VDDKGYLWAGTINGLSIINIETEEIIDMTKYIDTEKYIKHIYQDNEGNYYLGLLRDEGLCYINVKQKKIKYFSNDKSDKSSISSNRVRYINGDSKGNVWIGTSYGINKFDRKTETFERYTAED 586          
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI000D10A66F (response regulator n=1 Tax=Parabacteroides pacaensis TaxID=2086575 RepID=UPI000D10A66F)

HSP 1 Score: 52.8 bits (125), Expect = 2.520e-5
Identity = 36/147 (24.49%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    7 DKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVYP----------IYEDHEGVIWAGILRA-ELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKSN---IKEVKPFEDTEL--KFVRGLIKDRNGSIW 399
            D  G +WF +   L       +  Y ++ + + N  P          + ED +  IW G  +   ++  +  K +  +N +++P+     FL    + +W+GT VGL +++RKSN   + + +P + T +    +R L++D+ G IW
Sbjct:   48 DSEGYMWFATSNGLC-----RYNGYTLKMYKLSNQAPNLLQSNIVNTMIEDIDRRIWIGTEQGINILDRTTDKLQTISN-DSLPNPYIHCFLLTSDSTLWVGTQVGLLRYNRKSNNFTVYKNRPNDSTSICGNSIRALLEDKAGYIW 188          
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI0019869061 (Uncharacterized protein n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI0019869061)

HSP 1 Score: 51.6 bits (122), Expect = 6.300e-5
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  121 YEDHEGVIWAGILRAELVSISNSKAEVFNNMEAIPSNRFF-SFLEDEANEMWMGTSVGLFKWDRKSNIKEVKPFED--TELKFVRGLIKDRNGSIW 399
            +  HEGV+W G  + +L  +   +     N+  I +     +F E++ N +WMGTS GL ++DRK+ I     F D   +  +V  + KD NG+IW
Sbjct:  374 FTSHEGVLWVGSWQEDLYYMDPLQ----KNIPFISTGYTVRAFCEEDKNVLWMGTSEGLIRYDRKTGITN-HFFSDYANDNFYVAKIYKDYNGTIW 464          
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI0013CF7419 (response regulator n=1 Tax=Bacteroides sp. 224 TaxID=2302936 RepID=UPI0013CF7419)

HSP 1 Score: 51.6 bits (122), Expect = 6.360e-5
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  118 IYEDHEGVIWAG----ILRAELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKS-NIKEVKPFEDTELKFVRGLIKDRNGSIW 399
            I +D +G IW G    ++R   + I+N+KA+V+ N+ +I S      +E +AN MW+GT+ GLF  ++ S N +E+K    TE  ++  L + +N  ++
Sbjct:  451 IVKDSQGHIWIGGYHNLIR---IDIANNKAQVYPNINSITS-----VIEKDANNMWVGTTKGLFLINKTSGNTQELKLL--TESNYIYSLCQTKNNRLY 539          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00167FE9E08.290e-738.89sensor histidine kinase n=1 Tax=Pedobacter sp. SW-... [more]
UPI001ADA55448.440e-729.37response regulator n=1 Tax=Niastella soli TaxID=28... [more]
A0A6N3B4Z1_9FIRM2.850e-632.52Histidine kinase n=10 Tax=root TaxID=1 RepID=A0A6N... [more]
UPI000D10A66F2.520e-524.49response regulator n=1 Tax=Parabacteroides pacaens... [more]
UPI00198690616.300e-533.33Uncharacterized protein n=1 Tax=Ferruginibacter sp... [more]
UPI0013CF74196.360e-533.33response regulator n=1 Tax=Bacteroides sp. 224 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126809contigM-pyrifera_M_contig126809:42..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.8238926-CDS-M-pyrifera_M_contig126809:41..4401622815781.8238926-CDS-M-pyrifera_M_contig126809:41..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126809 42..440 +
1692277566.679434-CDS-M-pyrifera_M_contig126809:41..4401692277566.679434-CDS-M-pyrifera_M_contig126809:41..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126809 42..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126809.5391.1prot_M-pyrifera_M_contig126809.5391.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126809 42..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126809.5391.1

>prot_M-pyrifera_M_contig126809.5391.1 ID=prot_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
FVDKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVYPIYEDHEGVIWA
GILRAELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFK
WDRKSNIKEVKPFEDTELKFVRGLIKDRNGSIW
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mRNA from alignment at M-pyrifera_M_contig126809:42..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126809.5391.1 ID=mRNA_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig126809:42..440+ (Macrocystis pyrifera P11B4 male)
TTTGTTGATAAAACAGGGGCTCTATGGTTTGTATCGGTAGGTGAGTTACA TTATATCCAAAGAGACACCTTCGGTGCTTATGACATGCAAACTCATAATA TAGAAAATGTATATCCAATCTATGAAGATCATGAAGGGGTAATTTGGGCA GGAATACTAAGGGCAGAGCTTGTTTCTATTTCAAACTCTAAAGCAGAAGT TTTTAATAATATGGAAGCAATTCCATCTAATAGGTTTTTTTCTTTTTTAG AAGATGAGGCGAATGAAATGTGGATGGGTACTTCCGTTGGTCTTTTTAAA TGGGATAGAAAATCGAACATAAAAGAGGTTAAACCATTTGAAGATACTGA ACTTAAATTCGTAAGAGGGTTGATAAAAGATAGAAATGGATCGATTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126809:42..440+

>mRNA_M-pyrifera_M_contig126809.5391.1 ID=mRNA_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig126809:42..440+ (Macrocystis pyrifera P11B4 male)
TTTGTTGATAAAACAGGGGCTCTATGGTTTGTATCGGTAGGTGAGTTACA
TTATATCCAAAGAGACACCTTCGGTGCTTATGACATGCAAACTCATAATA
TAGAAAATGTATATCCAATCTATGAAGATCATGAAGGGGTAATTTGGGCA
GGAATACTAAGGGCAGAGCTTGTTTCTATTTCAAACTCTAAAGCAGAAGT
TTTTAATAATATGGAAGCAATTCCATCTAATAGGTTTTTTTCTTTTTTAG
AAGATGAGGCGAATGAAATGTGGATGGGTACTTCCGTTGGTCTTTTTAAA
TGGGATAGAAAATCGAACATAAAAGAGGTTAAACCATTTGAAGATACTGA
ACTTAAATTCGTAAGAGGGTTGATAAAAGATAGAAATGGATCGATTTGGT
TTGTTGATAAAACAGGGGCTCTATGGTTTGTATCGGTAGGTGAGTTACAT
TATATCCAAAGAGACACCTTCGGTGCTTATGACATGCAAACTCATAATAT
AGAAAATGTATATCCAATCTATGAAGATCATGAAGGGGTAATTTGGGCAG
GAATACTAAGGGCAGAGCTTGTTTCTATTTCAAACTCTAAAGCAGAAGTT
TTTAATAATATGGAAGCAATTCCATCTAATAGGTTTTTTTCTTTTTTAGA
AGATGAGGCGAATGAAATGTGGATGGGTACTTCCGTTGGTCTTTTTAAAT
GGGATAGAAAATCGAACATAAAAGAGGTTAAACCATTTGAAGATACTGAA
CTTAAATTCGTAAGAGGGTTGATAAAAGATAGAAATGGATCGATTTGG
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