mRNA_M-pyrifera_M_contig126785.5387.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126785.5387.1
Unique NamemRNA_M-pyrifera_M_contig126785.5387.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126785.5387.1 vs. uniprot
Match: D7FP22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP22_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.490e-17
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 VVSWQAFNMTGGDKVRLCLHDLKEDMKVLHMASKEDDKKDDDNDGIPDVKQV 156
            + + +AFNMTGG+KV LC+HDLK+D+K LH ASKEDDK+DDD+DGIPDVKQ+
Sbjct:  144 IAAIEAFNMTGGEKVMLCVHDLKQDIKALHYASKEDDKRDDDHDGIPDVKQI 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126785.5387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP22_ECTSI4.490e-1771.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126785contigM-pyrifera_M_contig126785:304..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog2880.D7FP22
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2C1MM@1,2S2PZ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001710.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.58743-UTR-M-pyrifera_M_contig126785:303..3271622815781.58743-UTR-M-pyrifera_M_contig126785:303..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126785 304..327 +
1692277566.5702946-UTR-M-pyrifera_M_contig126785:303..3271692277566.5702946-UTR-M-pyrifera_M_contig126785:303..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126785 304..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.598528-CDS-M-pyrifera_M_contig126785:327..4591622815781.598528-CDS-M-pyrifera_M_contig126785:327..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126785 328..459 +
1692277566.5819645-CDS-M-pyrifera_M_contig126785:327..4591692277566.5819645-CDS-M-pyrifera_M_contig126785:327..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126785 328..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126785.5387.1prot_M-pyrifera_M_contig126785.5387.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126785 328..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126785.5387.1

>prot_M-pyrifera_M_contig126785.5387.1 ID=prot_M-pyrifera_M_contig126785.5387.1|Name=mRNA_M-pyrifera_M_contig126785.5387.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MTGGDKVRLCLHDLKEDMKVLHMASKEDDKKDDDNDGIPDVKQV
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mRNA from alignment at M-pyrifera_M_contig126785:304..459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126785.5387.1 ID=mRNA_M-pyrifera_M_contig126785.5387.1|Name=mRNA_M-pyrifera_M_contig126785.5387.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig126785:304..459+ (Macrocystis pyrifera P11B4 male)
GTTGTTTCGTGGCAGGCGTTCAACATGACTGGGGGCGATAAGGTCCGTCT
GTGCTTACACGACCTTAAGGAGGACATGAAGGTGCTGCACATGGCCAGCA
AGGAGGACGACAAGAAGGACGACGACAACGACGGCATTCCCGACGTGAAA
CAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126785:304..459+

>mRNA_M-pyrifera_M_contig126785.5387.1 ID=mRNA_M-pyrifera_M_contig126785.5387.1|Name=mRNA_M-pyrifera_M_contig126785.5387.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig126785:304..459+ (Macrocystis pyrifera P11B4 male)
ATGACTGGGGGCGATAAGGTCCGTCTGTGCTTACACGACCTTAAGGAGGA
CATGAAGGTGCTGCACATGGCCAGCAAGGAGGACGACAAGAAGGACGACG
ACAACGACGGCATTCCCGACGTGAAACAGGTAATGACTGGGGGCGATAAG
GTCCGTCTGTGCTTACACGACCTTAAGGAGGACATGAAGGTGCTGCACAT
GGCCAGCAAGGAGGACGACAAGAAGGACGACGACAACGACGGCATTCCCG
ACGTGAAACAGGTA
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