mRNA_M-pyrifera_M_contig126750.5386.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126750.5386.1
Unique NamemRNA_M-pyrifera_M_contig126750.5386.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A3C0HNT6_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HNT6_9ACTN)

HSP 1 Score: 218 bits (555), Expect = 2.200e-65
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 1
Query:   16 LLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            ++G+ PGA CC  D+ ER+   + +    ++ L P ED DV+G+ WA+ LGI E++GEFTTN+  +QTRNINI RIAELT+GAVIEPG  FS+NDYVGRRT ENGFV AGVISNGVF +SVGGGISQYATTLFNAAFFAGLDFG+YQSHSIYISR PY REA
Sbjct:  286 IVGSSPGAVCCTLDTPERILAGM-EAGERLVELRPREDPDVQGIEWAKSLGIVEVIGEFTTNFQPNQTRNINIQRIAELTQGAVIEPGGEFSINDYVGRRTRENGFVDAGVISNGVFTTSVGGGISQYATTLFNAAFFAGLDFGDYQSHSIYISRYPYGREA 446          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A358A309_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A309_9ACTN)

HSP 1 Score: 214 bits (546), Expect = 1.010e-64
Identity = 111/162 (68.52%), Postives = 132/162 (81.48%), Query Frame = 1
Query:   16 LLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            +LG+ PGA CC  D+ +R+  A+ +   +V+ L P ED +V G+AWAE LGI E++GEFTT Y  +QTRNINI RIAELT+GAVIEPG  FS+NDYVGRRT E GFV AGVIS+GVF +SVGGGISQYATTLFNAAFFAGLDFG+YQSHSIY+SR P+ REA
Sbjct:  286 ILGSSPGAVCCTLDTPQRILAAM-EAGEQVVKLRPREDPEVRGIAWAESLGIVEVIGEFTTYYQPNQTRNINIQRIAELTQGAVIEPGGEFSINDYVGRRTREKGFVDAGVISHGVFTTSVGGGISQYATTLFNAAFFAGLDFGDYQSHSIYLSRYPFGREA 446          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A7Y2GKF7_9ACTN (PG_binding_4 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKF7_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 6.130e-58
Identity = 105/162 (64.81%), Postives = 122/162 (75.31%), Query Frame = 1
Query:   16 LLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            ++G  PG  CC  D+ ERL  A+     + + + PIE  +  G  WAE + I ELVGEFTT YTA Q+R +NIARI++LTRG VIEPGE FSVND+VGRRT ENGFV AGVI NG++   VGGGISQYATTLFNAAFFAGLDFGEYQSHS+ ISR PY REA
Sbjct:  293 IVGGRPGLACCTPDAPERLLRAII-LGDDTVAVEPIEIGEDAGRQWAESMQITELVGEFTTFYTAGQSRTVNIARISDLTRGVVIEPGEMFSVNDFVGRRTTENGFVGAGVIYNGIYTEDVGGGISQYATTLFNAAFFAGLDFGEYQSHSLPISRYPYGREA 453          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A7K1Z7Z8_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z7Z8_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 1.340e-57
Identity = 105/164 (64.02%), Postives = 123/164 (75.00%), Query Frame = 1
Query:   10 LYLLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            ++++G  PG+ CC  D+ ER+  A+      V V  P ED D +G+AWAE LGI+E+VG+FTTN+   Q R INI RIAELT+GAVIEPG TFSVN Y+G RTVE GFV AG I  GVF  S+GGGISQYATTLFNAAFFAGLDFG YQSHSIY+ R PY REA
Sbjct:  279 IHIVGGSPGSVCCTEDTGERILDALIAGEGRVKVR-PTEDPDAKGVAWAESLGIREVVGQFTTNFAPGQPRVINIFRIAELTQGAVIEPGGTFSVNGYIGPRTVEEGFVPAGTIYEGVFVDSIGGGISQYATTLFNAAFFAGLDFGVYQSHSIYLDRYPYGREA 441          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A3M2HDU3_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2HDU3_ACTSX)

HSP 1 Score: 192 bits (489), Expect = 1.040e-55
Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 1
Query:    7 ELYLLGALPGAECCAADSAERLFTAV--RDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            E+ ++G  P   CCAAD+A+ ++  +   D+  EV +    E     G  WAE LGI+ELVG FTT++   Q+R  NI RI+ELTRG VIEPGETFSVN++VGRRT   GFVAAGVI NGVF S VGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISR PY REA
Sbjct:  302 EVRIVGGEPDRSCCAADAADAVWAGLVAGDDPVEVPLA---ETPHPRGREWAESLGIRELVGGFTTHFKPGQSRVKNIERISELTRGVVIEPGETFSVNEFVGRRTTAKGFVAAGVIYNGVFRSDVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRYPYGREA 465          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A6J7AQ57_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J7AQ57_9ZZZZ)

HSP 1 Score: 192 bits (489), Expect = 1.200e-55
Identity = 101/167 (60.48%), Postives = 124/167 (74.25%), Query Frame = 1
Query:    1 DAELYLLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            D ++ +L   P  +CC AD+A R+ TA+   S+   V F  E    +G  WA  LG+KELVGEFTT Y A Q R +NI RIAELT+GA+IEPG+TFS+N +VG+RT+ENGFV+ GVI +GVF   VGGGISQYATTLFNAAFF GLD+ +YQSHSIYI+R PY REA
Sbjct:  283 DGKVLILEGEPATKCCNADTATRVNTALHARSSSTDVAFT-ETPRPKGREWAATLGVKELVGEFTTRYPAGQPRVVNIKRIAELTQGALIEPGKTFSINGFVGKRTIENGFVSGGVIQDGVFQEDVGGGISQYATTLFNAAFFGGLDYAKYQSHSIYITRYPYGREA 448          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A6G0A2D5_9ACTN (PG_binding_4 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A2D5_9ACTN)

HSP 1 Score: 188 bits (478), Expect = 3.440e-54
Identity = 103/167 (61.68%), Postives = 120/167 (71.86%), Query Frame = 1
Query:    1 DAELYLLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            D  +Y  GA  G  CC  DS++R+ TA+    T + +   +     E  AWAE LGIKE VGEFTTNY A ++R  NI RIA++TRG VIEPGET+SVNDYVG RTVE GFV  G I NG F + +GGG+SQYATTLFNAAFFAGLD+GEY SHSIYISR PY REA
Sbjct:  292 DQVVYQPGA-DGVVCCTEDSSQRVLTALEAGETTIQLQTKVVAA-AENAAWAESLGIKEKVGEFTTNYAAGESRVTNIHRIADITRGVVIEPGETWSVNDYVGPRTVEGGFVEGGAIYNGEFTTDIGGGVSQYATTLFNAAFFAGLDYGEYMSHSIYISRYPYGREA 456          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A6N9EUG7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9EUG7_9ACTN)

HSP 1 Score: 174 bits (440), Expect = 4.340e-48
Identity = 97/158 (61.39%), Postives = 112/158 (70.89%), Query Frame = 1
Query:   28 LPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            +PG  CC   +AE L   +  E  + ++L         G  WAE +GI  LV EFTT +T  Q R INIARI+ELTRG VIEPG+ FSVN+YVG RTV NGFV A +I +GVF  SVGGGISQYATTLFNAAFFAGLDF +YQSHSIY+SR PY REA
Sbjct:  304 VPGFRCCHETAAEVLLAGLM-EDRDPVMLPAAPAPHPRGREWAESMGITHLVAEFTTPFTPGQDRIINIARISELTRGVVIEPGQRFSVNEYVGPRTVANGFVPAAMILDGVFVDSVGGGISQYATTLFNAAFFAGLDFIDYQSHSIYLSRYPYGREA 460          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: UPI001F1B8200 (VanW family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F1B8200)

HSP 1 Score: 171 bits (432), Expect = 1.070e-47
Identity = 92/157 (58.60%), Postives = 113/157 (71.97%), Query Frame = 1
Query:   31 PGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            PG  CCAADS +R+  A+R    EV +    E  + +  AWA  +GI  +VG FTTN+ A ++R  NI RIA+L RG VIEPGETFSVN+YVG+RT   GFV AGVI  G F + +GGG+SQ+ATT+FNAAFFAGLD  EYQ+H+IYISR PY REA
Sbjct:  266 PGTGCCAADSPQRVVDALRSGRGEVDLDLATEQPEHDA-AWARRMGITTVVGTFTTNHAAGESRVTNIHRIADLIRGVVIEPGETFSVNEYVGQRTRAKGFVEAGVIYAGKFTTDIGGGVSQFATTMFNAAFFAGLDLVEYQAHTIYISRYPYGREA 421          
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Match: A0A7Y1UZZ1_9ACTN (PG_binding_4 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UZZ1_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 1.150e-47
Identity = 95/167 (56.89%), Postives = 115/167 (68.86%), Query Frame = 1
Query:    1 DAELYLLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLAWAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVNDYVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGEYQSHSIYISRSPYVREA 501
            + EL++   +P  +CCA   A  LF A    +T+ + L  +  ED  G + AEE GI ELV  FTTN++  Q R  NI RIA+L RG ++EPGET S+ND++GRRT  NGFVA GVI +G F   VGGGISQ+ATT FNAAFFAGLD  EYQSHSIYISR PY REA
Sbjct:  292 EGELHVDLGVPARQCCAPGVAPLLFEAAVTGTTKAVELPTVRVEDDGGQSRAEEFGINELVSTFTTNHSCCQNRVTNIHRIADLVRGQILEPGETLSINDFIGRRTRANGFVADGVIQSGHFIDEVGGGISQFATTTFNAAFFAGLDIPEYQSHSIYISRYPYGREA 458          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126750.5386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0HNT6_9ACTN2.200e-6569.14Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A358A309_9ACTN1.010e-6468.52Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7Y2GKF7_9ACTN6.130e-5864.81PG_binding_4 domain-containing protein (Fragment) ... [more]
A0A7K1Z7Z8_9ACTN1.340e-5764.02Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A3M2HDU3_ACTSX1.040e-5564.07Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A6J7AQ57_9ZZZZ1.200e-5560.48Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A6G0A2D5_9ACTN3.440e-5461.68PG_binding_4 domain-containing protein n=2 Tax=Bac... [more]
A0A6N9EUG7_9ACTN4.340e-4861.39Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI001F1B82001.070e-4758.60VanW family protein n=1 Tax=Rhabdothermincola sedi... [more]
A0A7Y1UZZ1_9ACTN1.150e-4756.89PG_binding_4 domain-containing protein n=1 Tax=Aci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126750contigM-pyrifera_M_contig126750:9..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.1
Seed ortholog evalue7.2e-33
Seed eggNOG ortholog1229780.BN381_10280
Preferred namevanW
Hectar predicted targeting categoryother localisation
EggNOG free text desc.VanW like protein
EggNOG OGs2GISH@201174,3UXFH@52018,COG2720@1,COG2720@2
COG Functional cat.V
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.5562856-CDS-M-pyrifera_M_contig126750:8..5091622815781.5562856-CDS-M-pyrifera_M_contig126750:8..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126750 9..509 +
1692277566.556951-CDS-M-pyrifera_M_contig126750:8..5091692277566.556951-CDS-M-pyrifera_M_contig126750:8..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126750 9..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126750.5386.1prot_M-pyrifera_M_contig126750.5386.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126750 9..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126750.5386.1

>prot_M-pyrifera_M_contig126750.5386.1 ID=prot_M-pyrifera_M_contig126750.5386.1|Name=mRNA_M-pyrifera_M_contig126750.5386.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
DAELYLLGALPGAECCAADSAERLFTAVRDESTEVIVLFPIEDEDVEGLA
WAEELGIKELVGEFTTNYTADQTRNINIARIAELTRGAVIEPGETFSVND
YVGRRTVENGFVAAGVISNGVFDSSVGGGISQYATTLFNAAFFAGLDFGE
YQSHSIYISRSPYVREA
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mRNA from alignment at M-pyrifera_M_contig126750:9..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126750.5386.1 ID=mRNA_M-pyrifera_M_contig126750.5386.1|Name=mRNA_M-pyrifera_M_contig126750.5386.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig126750:9..509+ (Macrocystis pyrifera P11B4 male)
GACGCCGAGCTCTATCTGCTCGGCGCCCTGCCCGGCGCCGAATGCTGTGC CGCCGACAGTGCGGAACGCCTCTTCACCGCGGTTCGCGACGAGAGCACCG AGGTCATCGTCCTCTTCCCCATCGAAGACGAGGACGTCGAGGGCCTCGCC TGGGCCGAGGAACTCGGGATCAAGGAACTCGTGGGCGAGTTCACCACCAA CTACACGGCCGACCAGACACGCAACATCAACATCGCCCGCATCGCCGAAC TCACACGAGGCGCGGTGATCGAGCCCGGCGAGACCTTCTCCGTCAACGAC TATGTCGGGCGGCGCACGGTCGAGAACGGCTTCGTGGCCGCCGGCGTGAT CAGCAACGGCGTGTTCGACAGCTCGGTCGGCGGCGGCATCTCGCAGTACG CCACGACCCTGTTCAACGCCGCCTTCTTCGCCGGACTCGACTTCGGCGAG TACCAGAGCCACTCGATCTACATCAGCCGCTCCCCCTACGTCCGAGAAGC A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126750:9..509+

>mRNA_M-pyrifera_M_contig126750.5386.1 ID=mRNA_M-pyrifera_M_contig126750.5386.1|Name=mRNA_M-pyrifera_M_contig126750.5386.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig126750:9..509+ (Macrocystis pyrifera P11B4 male)
GACGCCGAGCTCTATCTGCTCGGCGCCCTGCCCGGCGCCGAATGCTGTGC
CGCCGACAGTGCGGAACGCCTCTTCACCGCGGTTCGCGACGAGAGCACCG
AGGTCATCGTCCTCTTCCCCATCGAAGACGAGGACGTCGAGGGCCTCGCC
TGGGCCGAGGAACTCGGGATCAAGGAACTCGTGGGCGAGTTCACCACCAA
CTACACGGCCGACCAGACACGCAACATCAACATCGCCCGCATCGCCGAAC
TCACACGAGGCGCGGTGATCGAGCCCGGCGAGACCTTCTCCGTCAACGAC
TATGTCGGGCGGCGCACGGTCGAGAACGGCTTCGTGGCCGCCGGCGTGAT
CAGCAACGGCGTGTTCGACAGCTCGGTCGGCGGCGGCATCTCGCAGTACG
CCACGACCCTGTTCAACGCCGCCTTCTTCGCCGGACTCGACTTCGGCGAG
TACCAGAGCCACTCGATCTACATCAGCCGCTCCCCCTACGTCCGAGAAGC
AGACGCCGAGCTCTATCTGCTCGGCGCCCTGCCCGGCGCCGAATGCTGTG
CCGCCGACAGTGCGGAACGCCTCTTCACCGCGGTTCGCGACGAGAGCACC
GAGGTCATCGTCCTCTTCCCCATCGAAGACGAGGACGTCGAGGGCCTCGC
CTGGGCCGAGGAACTCGGGATCAAGGAACTCGTGGGCGAGTTCACCACCA
ACTACACGGCCGACCAGACACGCAACATCAACATCGCCCGCATCGCCGAA
CTCACACGAGGCGCGGTGATCGAGCCCGGCGAGACCTTCTCCGTCAACGA
CTATGTCGGGCGGCGCACGGTCGAGAACGGCTTCGTGGCCGCCGGCGTGA
TCAGCAACGGCGTGTTCGACAGCTCGGTCGGCGGCGGCATCTCGCAGTAC
GCCACGACCCTGTTCAACGCCGCCTTCTTCGCCGGACTCGACTTCGGCGA
GTACCAGAGCCACTCGATCTACATCAGCCGCTCCCCCTACGTCCGAGAAG
CA
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