mRNA_M-pyrifera_M_contig126748.5385.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: E1Z771_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z771_CHLVA) HSP 1 Score: 73.6 bits (179), Expect = 6.240e-13 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 1 CPPCGTVVER-KCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPCSL 180
CPPCG +V C+ G E ++ CS LF+C + CG+LL CG HHC CHAGTC PC L
Sbjct: 239 CPPCGELVSTVSCLCGAEVAQLPCSQQELFKCPRVCGKLLDCGRHHCEEVCHAGTCGPCKL 299
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: UPI0002659536 (transcriptional repressor NF-X1 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659536) HSP 1 Score: 72.8 bits (177), Expect = 1.140e-12 Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTC-DPCSLPCSLPRICSHXXXISHXXXPXXXPCPVLSPPTTCFCTTTPLSIPC 315
CPPC ++ E++C GGHE R+ + C + CG+ CG L C H C CH+G C + C PC + R C H P PC + PP+TCF L+ PC
Sbjct: 439 CPPCTSLTEKRCHGGHEMRRNIPCHLENV-SCGRACGLPLPCKRHTCDKICHSGECPEKCEQPCQVARDCGH---------PCKLPCHDICPPSTCFANVN-LTCPC 534
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A1V9X1I2_9ACAR (Transcriptional repressor NF-X1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X1I2_9ACAR) HSP 1 Score: 72.8 bits (177), Expect = 1.140e-12 Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDP-CSLPCSLPRICSHXXXISHXXXPXXXPCPVLSPPTTCF 285
CPPC +++E+KC GGHE R+ + C + CG+ CGR L CG H C CHAG C C PC R C H P PC P +TCF
Sbjct: 444 CPPCTSLIEKKCHGGHEIRRNIPCHLDNV-SCGRPCGRPLTCGRHTCDKTCHAGECPTVCEQPCRKLRKCGH---------PCKLPCHDECPISTCF 530
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: UPI001939EADB (NF-X1-type zinc finger protein NFXL1-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI001939EADB) HSP 1 Score: 70.9 bits (172), Expect = 5.500e-12 Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCH----------AG-TCDPCSLPCSLPR 198
CPPC + V + C+G HER + C + CG+KCGRLL+CG H CSL CH AG C C PC+ PR
Sbjct: 592 CPPCKSPVPKVCLGDHERSNLPCFEARRYCCGRKCGRLLKCGNHTCSLLCHTVEGSLDQKMAGKNCAACEEPCTKPR 668
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A821V5M3_9NEOP (Hypothetical protein n=5 Tax=Pieris TaxID=7115 RepID=A0A821V5M3_9NEOP) HSP 1 Score: 69.7 bits (169), Expect = 1.420e-11 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
CPPC + +KC G E + + CS+ + +CG++CGR L CG+H C+ CH G C+PC
Sbjct: 499 CPPCQATIAKKCGCGAESRSVLCSSKLPQECGRQCGRKLNCGVHSCANDCHEGPCEPC 556
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A1S3I8Q2_LINUN (transcriptional repressor NF-X1 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I8Q2_LINUN) HSP 1 Score: 67.4 bits (163), Expect = 9.170e-11 Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTC----DPCSLPCSLPR-ICSHXXXISHXXXPXXXPCPVLSP--PTTC 282
CPPC T+ E+ C+GGHE RK + C + CG +C + L CG H C L CH G C + C PC R +C H P PC ++P P+TC
Sbjct: 719 CPPCATLTEKLCMGGHELRKNIPCHLTDI-SCGLRCNKELPCGRHKCQLLCHKGACLKEGESCIQPCPESRPVCGH---------PCKAPCHQMAPCPPSTC 810
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A293MCF4_ORNER (Protein shuttle craft (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MCF4_ORNER) HSP 1 Score: 66.2 bits (160), Expect = 2.330e-10 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
CPPC V R C G K + CS CG++C ++L C +H C +PCHAG+C+PC
Sbjct: 473 CPPCVATVRRSCYCGSITKCVRCSQDQDLSCGERCAKVLNCEIHTCDVPCHAGSCNPC 530
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A7M7K6Z6_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7K6Z6_VARDE) HSP 1 Score: 65.5 bits (158), Expect = 4.310e-10 Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDP-CSLPCSL 192
CPPC ++ E+KC GGHE R+ + C + CG+ CGR L CG H C CHAG C C PC +
Sbjct: 738 CPPCTSLTEKKCHGGHELRRNIPCHLDNV-SCGRPCGRPLSCGRHSCDKTCHAGECPTSCEQPCKV 802
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: W6KC25_9TRYP (RING-type domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KC25_9TRYP) HSP 1 Score: 65.1 bits (157), Expect = 5.600e-10 Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHERKEMACSAPML-FQCGKKCGRLLQCGMHHCSLPCHAGTCDPCSL 180
CPPCG E+ C G E K + CS+ + F+C + CG+LL CG HHC + CH G C C +
Sbjct: 144 CPPCGCTREQACYCGKEIKMVGCSSMIDGFECNQPCGKLLDCGRHHCEVLCHTGPCPICKV 204
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A2R5LJK7_9ACAR (Putative transcription factor nf-x1 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LJK7_9ACAR) HSP 1 Score: 64.7 bits (156), Expect = 8.070e-10 Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 1
Query: 1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
CPPC V R C G + + CS CG CG+LL C +H C +PCHAG C PC
Sbjct: 443 CPPCSATVRRPCHCGRITRCVRCSQQQDLSCGDPCGQLLNCEIHTCDVPCHAGGCKPC 500 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126748.5385.1 >prot_M-pyrifera_M_contig126748.5385.1 ID=prot_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCback to top mRNA from alignment at M-pyrifera_M_contig126748:33..365+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126748.5385.1 ID=mRNA_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig126748:33..365+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126748:33..365+ >mRNA_M-pyrifera_M_contig126748.5385.1 ID=mRNA_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig126748:33..365+ (Macrocystis pyrifera P11B4 male)back to top |