mRNA_M-pyrifera_M_contig126683.5374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126683.5374.1
Unique NamemRNA_M-pyrifera_M_contig126683.5374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A6I6A605_9PLAN (Asparagine synthase (Glutamine-hydrolyzing) n=9 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A605_9PLAN)

HSP 1 Score: 224 bits (570), Expect = 1.010e-67
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELRT 324
            CGITGT WTTRDKNISPLVLRSMTSVI+HRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPL NEDGTVWIVFNGEIYNYQELRT
Sbjct:    2 CGITGTLWTTRDKNISPLVLRSMTSVISHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLSNEDGTVWIVFNGEIYNYQELRT 109          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A517V7Q8_9PLAN (Asparagine synthetase [glutamine-hydrolyzing] 1 n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V7Q8_9PLAN)

HSP 1 Score: 187 bits (474), Expect = 8.960e-54
Identity = 84/107 (78.50%), Postives = 97/107 (90.65%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELR 321
            CGITGTSWT+RDKNISP VL+ MTSV+AHRGPDD+GG+HSD+  +S LF+ EN ++DF P+S+ GAALGHRRLSIIDLGTGHQPL NEDGT+WIVFNGEIYNYQELR
Sbjct:    2 CGITGTSWTSRDKNISPDVLQRMTSVLAHRGPDDSGGFHSDIPGKSILFSAENSFADFQPHSDVGAALGHRRLSIIDLGTGHQPLTNEDGTIWIVFNGEIYNYQELR 108          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A517VX52_9PLAN (Asparagine synthetase [glutamine-hydrolyzing] 1 n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VX52_9PLAN)

HSP 1 Score: 179 bits (454), Expect = 6.660e-51
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELR 321
            CGITGT+WTTR+KNI P VL+ MT+V+ HRGPDDAGGYHS++  +SFLF+DE+ + DF P S+ GAALGHRRLSIIDLGTGHQPL NEDG+VWIVFNGEIYNY ELR
Sbjct:    2 CGITGTAWTTREKNILPDVLKRMTNVLEHRGPDDAGGYHSNVSGKSFLFSDESAYVDFNPASDVGAALGHRRLSIIDLGTGHQPLSNEDGSVWIVFNGEIYNYVELR 108          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A518ICX2_9PLAN (Asparagine synthetase [glutamine-hydrolyzing] 1 n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518ICX2_9PLAN)

HSP 1 Score: 176 bits (445), Expect = 1.290e-49
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELR 321
            CGITG +WT R+KNISP +LR MT V++HRGPDD+GGYHSD+  +SFL  D N  +DF P S+ GAALGHRRLSIIDLGTGHQPL NEDG+VWI FNGEIYNYQELR
Sbjct:    2 CGITGIAWTAREKNISPRILRRMTDVLSHRGPDDSGGYHSDMPGKSFLLNDPNTTADFQPVSDIGAALGHRRLSIIDLGTGHQPLSNEDGSVWIAFNGEIYNYQELR 108          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A517ZMD7_9PLAN (Asparagine synthetase [glutamine-hydrolyzing] 1 n=4 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZMD7_9PLAN)

HSP 1 Score: 125 bits (313), Expect = 3.850e-31
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELRT 324
            CGITG +WT     +   +LR MT+ +AHRGPDD G Y S   S        N   D +     GAALGHRRLSIIDLG GHQPL NEDGTVWI FNGEIYNY+EL+T
Sbjct:    2 CGITGAAWTAGQPPLDIDILRRMTTALAHRGPDDNGYYRSTDSS--------NASGDLSAAQPPGAALGHRRLSIIDLGGGHQPLSNEDGTVWIAFNGEIYNYRELQT 101          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A353Z6J3_9PLAN (Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353Z6J3_9PLAN)

HSP 1 Score: 124 bits (312), Expect = 5.400e-31
Identity = 64/111 (57.66%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSET----GAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELR 321
            CGITG  WT     + P VLR MT  + HRGPDDAG Y S L  R        +W+   P +      GAA G RRLSIIDL TGHQPL NEDGTVWIVFNGEIYNY+EL+
Sbjct:    2 CGITGMVWTGGSPPLEPAVLRQMTEALVHRGPDDAGYYFSGLPDR--------EWTGTAPLAPLPPGPGAAFGFRRLSIIDLSTGHQPLSNEDGTVWIVFNGEIYNYRELQ 104          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A517QQB8_9PLAN (Asparagine synthetase [glutamine-hydrolyzing] 1 n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QQB8_9PLAN)

HSP 1 Score: 119 bits (297), Expect = 5.600e-29
Identity = 59/108 (54.63%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELRT 324
            CGI G  WT R   +S  VL  M   I HRGPDD+G Y                   F+    T  ALGHRRLSIIDLG GHQPLCNEDGT+WI FNGEIYNY+ELR+
Sbjct:    2 CGIAGGVWTNRAAELSQDVLTRMLDSIRHRGPDDSGNY-------------------FSKEGTTNCALGHRRLSIIDLGGGHQPLCNEDGTIWIAFNGEIYNYKELRS 90          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A5C5VNJ6_9BACT (Asparagine synthetase [glutamine-hydrolyzing] 1 n=2 Tax=Blastopirellula TaxID=265487 RepID=A0A5C5VNJ6_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.050e-28
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELRT 324
            CGITG +WT     +S   LR MT  I+HRGPDDAG YH D +SRS           + P    G ALGHRRLSIIDL  GHQPL NED TVW  FNGEIYN+  LR+
Sbjct:    2 CGITGAAWTDPQLAVSADALRKMTDSISHRGPDDAGYYHRDFQSRS----------PYPPLP--GVALGHRRLSIIDLAGGHQPLANEDETVWTAFNGEIYNFHALRS 97          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A2G2K3Q0_9BACT (Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2K3Q0_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.050e-28
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELRT 324
            CGITG  WT   K I    LR MT+V+AHRGPDD+G  HS+L+          Q S +   +  G ALGHRRLSIID+  GHQP+CNED TVW+VFNGEIYN+Q LR+
Sbjct:    2 CGITGALWTDPAKAIEIDRLRKMTNVLAHRGPDDSGLLHSNLQ----------QCSPYP--TIPGIALGHRRLSIIDIAGGHQPMCNEDETVWVVFNGEIYNFQALRS 97          
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Match: A0A2S8GG57_9BACT (Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GG57_9BACT)

HSP 1 Score: 115 bits (287), Expect = 1.310e-27
Identity = 59/107 (55.14%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFADENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEIYNYQELR 321
            CGITG +WT     +S   LR MT  I HRGPDD+G YH  LESR+           + P    G ALGHRRLSIIDL  GHQPL NED T+W +FNGEIYN+  LR
Sbjct:    2 CGITGAAWTASQLAVSAEALRRMTDSITHRGPDDSGYYHRPLESRN----------PYPP--VPGVALGHRRLSIIDLAGGHQPLPNEDETIWTIFNGEIYNFGALR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126683.5374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A605_9PLAN1.010e-6797.22Asparagine synthase (Glutamine-hydrolyzing) n=9 Ta... [more]
A0A517V7Q8_9PLAN8.960e-5478.50Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A517VX52_9PLAN6.660e-5175.70Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A518ICX2_9PLAN1.290e-4973.83Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A517ZMD7_9PLAN3.850e-3158.33Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A353Z6J3_9PLAN5.400e-3157.66Asparagine synthase (Glutamine-hydrolyzing) n=1 Ta... [more]
A0A517QQB8_9PLAN5.600e-2954.63Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A5C5VNJ6_9BACT1.050e-2856.48Asparagine synthetase [glutamine-hydrolyzing] 1 n=... [more]
A0A2G2K3Q0_9BACT1.050e-2856.48Asparagine synthase (Glutamine-hydrolyzing) n=1 Ta... [more]
A0A2S8GG57_9BACT1.310e-2755.14Asparagine synthase (Glutamine-hydrolyzing) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126683contigM-pyrifera_M_contig126683:3..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score146.0
Seed ortholog evalue1e-32
Seed eggNOG ortholog344747.PM8797T_29887
KEGG rclassRC00010
KEGG koko:K01953
KEGG ReactionR00578
KEGG Pathwayko00250,ko01100,ko01110,map00250,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Asparagine synthase, glutamine-hydrolyzing
EggNOG OGs2IXAI@203682,COG0367@1,COG0367@2
EC6.3.5.4
COG Functional cat.E
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.1017485-CDS-M-pyrifera_M_contig126683:2..3261622815781.1017485-CDS-M-pyrifera_M_contig126683:2..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126683 3..326 +
1692277566.3703678-CDS-M-pyrifera_M_contig126683:2..3261692277566.3703678-CDS-M-pyrifera_M_contig126683:2..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126683 3..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126683.5374.1prot_M-pyrifera_M_contig126683.5374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126683 3..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126683.5374.1

>prot_M-pyrifera_M_contig126683.5374.1 ID=prot_M-pyrifera_M_contig126683.5374.1|Name=mRNA_M-pyrifera_M_contig126683.5374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
CGITGTSWTTRDKNISPLVLRSMTSVIAHRGPDDAGGYHSDLESRSFLFA
DENQWSDFTPNSETGAALGHRRLSIIDLGTGHQPLCNEDGTVWIVFNGEI
YNYQELRT
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mRNA from alignment at M-pyrifera_M_contig126683:3..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126683.5374.1 ID=mRNA_M-pyrifera_M_contig126683.5374.1|Name=mRNA_M-pyrifera_M_contig126683.5374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig126683:3..326+ (Macrocystis pyrifera P11B4 male)
TGCGGAATCACCGGAACCTCGTGGACCACACGGGACAAGAATATCTCCCC ACTGGTGCTCCGCAGTATGACCAGTGTCATCGCTCATCGAGGCCCCGATG ATGCGGGAGGCTATCATTCCGACCTGGAATCCAGGTCATTTCTGTTCGCT GATGAAAACCAATGGTCCGACTTCACTCCGAACTCTGAAACCGGTGCCGC CCTAGGACACCGCCGCCTGTCGATCATCGACCTGGGAACCGGGCATCAGC CACTCTGCAATGAAGACGGCACTGTCTGGATCGTCTTTAACGGCGAAATC TACAACTACCAGGAGCTCAGAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126683:3..326+

>mRNA_M-pyrifera_M_contig126683.5374.1 ID=mRNA_M-pyrifera_M_contig126683.5374.1|Name=mRNA_M-pyrifera_M_contig126683.5374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig126683:3..326+ (Macrocystis pyrifera P11B4 male)
TGCGGAATCACCGGAACCTCGTGGACCACACGGGACAAGAATATCTCCCC
ACTGGTGCTCCGCAGTATGACCAGTGTCATCGCTCATCGAGGCCCCGATG
ATGCGGGAGGCTATCATTCCGACCTGGAATCCAGGTCATTTCTGTTCGCT
GATGAAAACCAATGGTCCGACTTCACTCCGAACTCTGAAACCGGTGCCGC
CCTAGGACACCGCCGCCTGTCGATCATCGACCTGGGAACCGGGCATCAGC
CACTCTGCAATGAAGACGGCACTGTCTGGATCGTCTTTAACGGCGAAATC
TACAACTACCAGGAGCTCAGAACATGCGGAATCACCGGAACCTCGTGGAC
CACACGGGACAAGAATATCTCCCCACTGGTGCTCCGCAGTATGACCAGTG
TCATCGCTCATCGAGGCCCCGATGATGCGGGAGGCTATCATTCCGACCTG
GAATCCAGGTCATTTCTGTTCGCTGATGAAAACCAATGGTCCGACTTCAC
TCCGAACTCTGAAACCGGTGCCGCCCTAGGACACCGCCGCCTGTCGATCA
TCGACCTGGGAACCGGGCATCAGCCACTCTGCAATGAAGACGGCACTGTC
TGGATCGTCTTTAACGGCGAAATCTACAACTACCAGGAGCTCAGAACA
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