mRNA_M-pyrifera_M_contig126672.5372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126672.5372.1
Unique NamemRNA_M-pyrifera_M_contig126672.5372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126672.5372.1 vs. uniprot
Match: A0A2E1VS69_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VS69_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-12
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   73 SSSAVAQSGPPQDAVNELCPIGAEPIDDETFVVYEGHRIGFCCGGCDSKFLA 228
            +S A+AQS     A+N  CPIG E ID ETFV Y+GH IGFCC GCD+KFLA
Sbjct:   14 ASPALAQS----KAINLNCPIGKEAIDQETFVEYQGHTIGFCCAGCDTKFLA 61
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BLAST of mRNA_M-pyrifera_M_contig126672.5372.1 vs. uniprot
Match: A0A2V8STH8_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8STH8_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 2.080e-5
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:  112 AVNELCPIGAEPIDDETFVVYEGHRIGFCCGGCDSKF 222
            AVNE+CP+ AEPID    V +EG ++ FCC  C  K+
Sbjct:   88 AVNEVCPVSAEPIDKTKSVEFEGRKVYFCCDHCVEKY 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126672.5372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E1VS69_9BACT3.040e-1263.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2V8STH8_9BACT2.080e-551.35Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126672contigM-pyrifera_M_contig126672:153..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.0329478-CDS-M-pyrifera_M_contig126672:152..3801622815781.0329478-CDS-M-pyrifera_M_contig126672:152..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126672 153..380 -
1692277566.3294308-CDS-M-pyrifera_M_contig126672:152..3801692277566.3294308-CDS-M-pyrifera_M_contig126672:152..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126672 153..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126672.5372.1prot_M-pyrifera_M_contig126672.5372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126672 153..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126672.5372.1

>prot_M-pyrifera_M_contig126672.5372.1 ID=prot_M-pyrifera_M_contig126672.5372.1|Name=mRNA_M-pyrifera_M_contig126672.5372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MKNLILSLLLLFLPVLATAAALSPSSSAVAQSGPPQDAVNELCPIGAEPI
DDETFVVYEGHRIGFCCGGCDSKFLA
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mRNA from alignment at M-pyrifera_M_contig126672:153..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126672.5372.1 ID=mRNA_M-pyrifera_M_contig126672.5372.1|Name=mRNA_M-pyrifera_M_contig126672.5372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig126672:153..380- (Macrocystis pyrifera P11B4 male)
ATGAAAAATCTGATCCTATCGCTGCTCCTTCTTTTCCTGCCCGTGCTTGC
TACGGCAGCCGCACTCAGCCCTTCTTCCAGCGCGGTGGCTCAATCAGGGC
CGCCGCAAGACGCAGTCAATGAGCTTTGTCCGATCGGCGCTGAGCCAATC
GACGACGAGACGTTCGTGGTGTACGAAGGACATCGGATCGGCTTCTGTTG
TGGAGGGTGCGACTCCAAATTTCTCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126672:153..380-

>mRNA_M-pyrifera_M_contig126672.5372.1 ID=mRNA_M-pyrifera_M_contig126672.5372.1|Name=mRNA_M-pyrifera_M_contig126672.5372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig126672:153..380- (Macrocystis pyrifera P11B4 male)
ATGAAAAATCTGATCCTATCGCTGCTCCTTCTTTTCCTGCCCGTGCTTGC
TACGGCAGCCGCACTCAGCCCTTCTTCCAGCGCGGTGGCTCAATCAGGGC
CGCCGCAAGACGCAGTCAATGAGCTTTGTCCGATCGGCGCTGAGCCAATC
GACGACGAGACGTTCGTGGTGTACGAAGGACATCGGATCGGCTTCTGTTG
TGGAGGGTGCGACTCCAAATTTCTCGCTATGAAAAATCTGATCCTATCGC
TGCTCCTTCTTTTCCTGCCCGTGCTTGCTACGGCAGCCGCACTCAGCCCT
TCTTCCAGCGCGGTGGCTCAATCAGGGCCGCCGCAAGACGCAGTCAATGA
GCTTTGTCCGATCGGCGCTGAGCCAATCGACGACGAGACGTTCGTGGTGT
ACGAAGGACATCGGATCGGCTTCTGTTGTGGAGGGTGCGACTCCAAATTT
CTCGCT
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