mRNA_M-pyrifera_M_contig126668.5370.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126668.5370.1
Unique NamemRNA_M-pyrifera_M_contig126668.5370.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: UPI0006D214BA (SO_0444 family Cu/Zn efflux transporter n=1 Tax=Desulfovibrio brasiliensis TaxID=221711 RepID=UPI0006D214BA)

HSP 1 Score: 119 bits (299), Expect = 9.610e-30
Identity = 73/139 (52.52%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    4 SFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSK 420
            SFF + V  G + +L+M+AVG PLY+CATASTPIAA+LV KGLSPGAALVFLL GPATN  TL  + K++G+RA   YL  I + ++A G+ T+ LY ALDLD+  +++ A    P  +  VA A +LL L+VR  L +
Sbjct:  207 SFFREYVGQGFMPLLIMLAVGLPLYVCATASTPIAASLVLKGLSPGAALVFLLAGPATNGATLTVMFKVLGQRAAVAYLVAIAVCSVALGWLTDRLYAALDLDITAVLSGAEEALPE-WVGVASALVLLALIVRTFLVR 344          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: A0A3B8KPR9_9BACT (Uncharacterized protein n=2 Tax=Synergistales TaxID=649776 RepID=A0A3B8KPR9_9BACT)

HSP 1 Score: 119 bits (298), Expect = 1.420e-29
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 ASFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLV 399
            A    +T+  GL+ ML  +AV TPLY+CATASTPI A+L  KGLSPGAALVFLL GPATN T+L  VT+++GK+A AIYL  I++ +L  G A N LY  L LD    +A+A+  EP  F+  +   L LLL+
Sbjct:  207 ADLIPETLGTGLLSMLAALAVSTPLYVCATASTPIVASLALKGLSPGAALVFLLAGPATNVTSLTVVTRILGKKASAIYLSTIIVSSLLLGLAVNMLYNTLGLDTSKWLAKAIEDEPGLFSLTSAIVLSLLLL 339          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: W4LBX4_9BACT (Protein HflK n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LBX4_9BACT)

HSP 1 Score: 119 bits (298), Expect = 2.170e-28
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    4 SFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKIGP 429
            +FFT  VP G    LLM+ +GTP+YICA A+TP+A  L+AKGL PGAALV LLVGPATNATT+L + +L+GKR + ++L G+   AL  G   +A+Y  L +DL T+ AE +    S  A VA A L++LLV   +  ++ P
Sbjct:  232 NFFTLYVPAGWAAYLLMLVIGTPIYICAAAATPVAVALIAKGLDPGAALVLLLVGPATNATTMLVIGRLLGKRILVVHLIGVTGCALILGAILDAIYPLLGIDLSTIAAEVVHRGLSPVAVVAAAILIVLLVRSAIRIRLMP 373          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: A0A6J4XLP6_9DELT (Uncharacterized membrane protein, YraQ family n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XLP6_9DELT)

HSP 1 Score: 115 bits (288), Expect = 2.180e-28
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 ASFFTDTVPD---------GLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVR 405
            A F T  +PD         GL  MLLM+A+G PLYICATASTPIAA L+ KG+SPGAALVFLLVGPATN  +L  VT ++GKRA AIYLG I + A+  G A + +Y ++ +  + +V +A    P  + Q  GA L+L+L V+
Sbjct:  128 AGFITVLIPDDIFSTYLGSGLSAMLLMLAIGIPLYICATASTPIAAALILKGVSPGAALVFLLVGPATNVASLTVVTGILGKRATAIYLGAIAVSAVFFGLAVDQVYTSMGISAQAMVGQASEVMP-LWVQWVGALLVLILSVK 270          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: A0A7C8HXG6_9DELT (Putative two-component membrane permease complex subunit n=1 Tax=Halodesulfovibrio sp. MK-HDV TaxID=2599925 RepID=A0A7C8HXG6_9DELT)

HSP 1 Score: 116 bits (290), Expect = 2.720e-28
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    4 SFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKIGPAAHDH 444
            +FF + V DGL+ M+LM+ +G P+Y+CATASTPIAA L  KGLSPG ALVFLL GPATNA T+  V + +GKR   IY+G I + ++  G A N LY  L L + + + +  AH+      + G A  ++L+V +    IG   H H
Sbjct:  216 TFFQEYVGDGLLSMILMVVIGVPMYVCATASTPIAAALALKGLSPGGALVFLLAGPATNAATITVVAQTLGKRVAFIYVGSIAVTSVILGLAVNWLYAKLGLSVFSWINDVEAHQHG----IVGYASAIILLVLVGKQFIGRRGHQH 358          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: W4LK81_9BACT (Protein HflK n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LK81_9BACT)

HSP 1 Score: 118 bits (296), Expect = 4.050e-28
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    4 SFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKIGP 429
            +FFT  VP G    LLM+ +GTP+YICA A+TP+A  L+AKGL PGAALV LLVGPATNATT+L + +L+GKR +A++L G+   AL  G   + LY AL +DL T  AE +    S  A  A A L+  LV   +  ++ P
Sbjct:  234 NFFTLYVPRGWAAYLLMLVIGTPIYICAAAATPVAVALIAKGLDPGAALVLLLVGPATNATTMLVIARLLGKRILAVHLIGVTGCALLLGAILDELYPALGIDLSTAAAEVVHRGLSPIAAAAAAILIFFLVRSAIRIRLMP 375          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: B3EE98_CHLL2 (Permease n=2 Tax=Chlorobium limicola TaxID=1092 RepID=B3EE98_CHLL2)

HSP 1 Score: 115 bits (288), Expect = 5.150e-28
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   43 MLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKIGPAAHDH 444
            MLLM+A+  PLY+CATASTPIAA L  KG+SPGAALVFLL GPATNA  +  + KLIG+RA  +Y+  IV ++  AG A NALY AL +D+   +A A AHE  +   +  A  L++LV R ++  +   AH H
Sbjct:  233 MLLMLAISVPLYVCATASTPIAAALALKGISPGAALVFLLAGPATNAAAITVIAKLIGRRATVVYVAVIVAMSFLAGIAVNALYGALGIDITGWLA-ASAHEEGSLVAMLSAVALIVLVARAMM--LPAKAHAH 363          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: M5Q3A3_DESAF (Putative permease n=1 Tax=Desulfocurvibacter africanus PCS TaxID=1262666 RepID=M5Q3A3_DESAF)

HSP 1 Score: 110 bits (276), Expect = 6.090e-28
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 ASFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVL 414
            A F    +  G+V ML+M+ VG P+++CAT+STP+ A L AKGLSPGAALVFLL GP TNA T+  + +++G+R  A+YL  I +V+L  G A + LY +L LD+   V EA   E    A +A A +LL+LV+R VL
Sbjct:   32 AGFIEQHLGSGIVPMLIMLGVGMPIFVCATSSTPVVAALAAKGLSPGAALVFLLAGPVTNAATVTVLGRILGRRITAVYLATIAVVSLGMGLAVDWLYVSLALDISGWVREAGVEEGGPVA-LASAVILLILVLRAVL 168          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: A0A1T4WL26_9DELT (Uncharacterized protein n=2 Tax=Paradesulfovibrio TaxID=2910986 RepID=A0A1T4WL26_9DELT)

HSP 1 Score: 115 bits (288), Expect = 6.180e-28
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    7 FFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSK 420
            FFT+ +      +L+M+  G PLY+CATASTPIAA+L  KGLSPGAALVFLL GPATNA T+  V++++GK+AV+IYLG I + +L  G+ TN +Y +L +D+ + V E    E + F+ V    +LL LV R +  K
Sbjct:  236 FFTEMLGGEWTSLLVMLVFGVPLYVCATASTPIAASLALKGLSPGAALVFLLAGPATNAATIAVVSRVLGKKAVSIYLGSIAICSLGLGWLTNKIYASLGMDITSWVRETHIDEVTPFSIVC-VVVLLALVFRSLRKK 372          
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Match: Q317G3_OLEA2 (Uncharacterized protein n=2 Tax=Oleidesulfovibrio alaskensis TaxID=58180 RepID=Q317G3_OLEA2)

HSP 1 Score: 115 bits (289), Expect = 6.460e-28
Identity = 72/150 (48.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    4 SFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAALVFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQALDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKI---GPAAHDH 444
            +FF   + DGL+ ML+M+ VG PLY+CATASTP+AA +  KGLSPGAALVFLL GPATNA T   V +L+G++  A+YL  I + ++A G A N LY  L L + + V  A        A +A A +LL LV    L  I   G  AH H
Sbjct:  246 TFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAGPATNAATFTVVARLMGRKVAAVYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEESHGVIA-IASAVVLLGLVAYRTLPGIIRRGHNAHGH 394          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126668.5370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006D214BA9.610e-3052.52SO_0444 family Cu/Zn efflux transporter n=1 Tax=De... [more]
A0A3B8KPR9_9BACT1.420e-2952.63Uncharacterized protein n=2 Tax=Synergistales TaxI... [more]
W4LBX4_9BACT2.170e-2849.30Protein HflK n=1 Tax=Candidatus Entotheonella fact... [more]
A0A6J4XLP6_9DELT2.180e-2850.69Uncharacterized membrane protein, YraQ family n=1 ... [more]
A0A7C8HXG6_9DELT2.720e-2845.58Putative two-component membrane permease complex s... [more]
W4LK81_9BACT4.050e-2849.30Protein HflK n=2 Tax=Candidatus Entotheonella TaxI... [more]
B3EE98_CHLL25.150e-2851.49Permease n=2 Tax=Chlorobium limicola TaxID=1092 Re... [more]
M5Q3A3_DESAF6.090e-2848.55Putative permease n=1 Tax=Desulfocurvibacter afric... [more]
A0A1T4WL26_9DELT6.180e-2849.28Uncharacterized protein n=2 Tax=Paradesulfovibrio ... [more]
Q317G3_OLEA26.460e-2848.00Uncharacterized protein n=2 Tax=Oleidesulfovibrio ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126668contigM-pyrifera_M_contig126668:61..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score116.3
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog207559.Dde_0132
KEGG koko:K07089
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Predicted permease
EggNOG OGs1MUN8@1224,2M8KS@213115,2WJPP@28221,42NHE@68525,COG0701@1,COG0701@2
COG Functional cat.S
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.951853-CDS-M-pyrifera_M_contig126668:60..5071622815780.951853-CDS-M-pyrifera_M_contig126668:60..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126668 61..507 -
1692277566.3073323-CDS-M-pyrifera_M_contig126668:60..5071692277566.3073323-CDS-M-pyrifera_M_contig126668:60..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126668 61..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126668.5370.1prot_M-pyrifera_M_contig126668.5370.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126668 61..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126668.5370.1

>prot_M-pyrifera_M_contig126668.5370.1 ID=prot_M-pyrifera_M_contig126668.5370.1|Name=mRNA_M-pyrifera_M_contig126668.5370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
ASFFTDTVPDGLVGMLLMIAVGTPLYICATASTPIAATLVAKGLSPGAAL
VFLLVGPATNATTLLDVTKLIGKRAVAIYLGGIVLVALAAGYATNALYQA
LDLDLRTLVAEAMAHEPSTFAQVAGAALLLLLVVRLVLSKIGPAAHDH*
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mRNA from alignment at M-pyrifera_M_contig126668:61..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126668.5370.1 ID=mRNA_M-pyrifera_M_contig126668.5370.1|Name=mRNA_M-pyrifera_M_contig126668.5370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig126668:61..507- (Macrocystis pyrifera P11B4 male)
GCCTCGTTCTTCACCGACACGGTCCCGGACGGGCTGGTCGGCATGCTGCT GATGATCGCGGTCGGCACACCGCTCTACATCTGCGCGACCGCCTCGACGC CCATCGCCGCGACCCTGGTGGCCAAGGGCCTCTCGCCGGGCGCGGCGTTG GTCTTCCTGTTGGTCGGCCCGGCCACGAACGCGACGACGCTGCTGGACGT CACCAAGCTGATCGGCAAGCGCGCGGTCGCGATCTACCTGGGCGGCATCG TGCTGGTCGCGCTGGCCGCGGGCTACGCGACCAACGCGCTGTACCAAGCG CTCGACCTGGACCTGCGCACCCTGGTCGCCGAGGCGATGGCCCACGAGCC GAGCACCTTTGCGCAGGTCGCCGGCGCGGCGCTGCTACTCTTGTTGGTCG TGCGGTTGGTGCTGTCGAAGATTGGGCCTGCGGCCCATGACCACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126668:61..507-

>mRNA_M-pyrifera_M_contig126668.5370.1 ID=mRNA_M-pyrifera_M_contig126668.5370.1|Name=mRNA_M-pyrifera_M_contig126668.5370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig126668:61..507- (Macrocystis pyrifera P11B4 male)
GCCTCGTTCTTCACCGACACGGTCCCGGACGGGCTGGTCGGCATGCTGCT
GATGATCGCGGTCGGCACACCGCTCTACATCTGCGCGACCGCCTCGACGC
CCATCGCCGCGACCCTGGTGGCCAAGGGCCTCTCGCCGGGCGCGGCGTTG
GTCTTCCTGTTGGTCGGCCCGGCCACGAACGCGACGACGCTGCTGGACGT
CACCAAGCTGATCGGCAAGCGCGCGGTCGCGATCTACCTGGGCGGCATCG
TGCTGGTCGCGCTGGCCGCGGGCTACGCGACCAACGCGCTGTACCAAGCG
CTCGACCTGGACCTGCGCACCCTGGTCGCCGAGGCGATGGCCCACGAGCC
GAGCACCTTTGCGCAGGTCGCCGGCGCGGCGCTGCTACTCTTGTTGGTCG
TGCGGTTGGTGCTGTCGAAGATTGGGCCTGCGGCCCATGACCACTAAGCC
TCGTTCTTCACCGACACGGTCCCGGACGGGCTGGTCGGCATGCTGCTGAT
GATCGCGGTCGGCACACCGCTCTACATCTGCGCGACCGCCTCGACGCCCA
TCGCCGCGACCCTGGTGGCCAAGGGCCTCTCGCCGGGCGCGGCGTTGGTC
TTCCTGTTGGTCGGCCCGGCCACGAACGCGACGACGCTGCTGGACGTCAC
CAAGCTGATCGGCAAGCGCGCGGTCGCGATCTACCTGGGCGGCATCGTGC
TGGTCGCGCTGGCCGCGGGCTACGCGACCAACGCGCTGTACCAAGCGCTC
GACCTGGACCTGCGCACCCTGGTCGCCGAGGCGATGGCCCACGAGCCGAG
CACCTTTGCGCAGGTCGCCGGCGCGGCGCTGCTACTCTTGTTGGTCGTGC
GGTTGGTGCTGTCGAAGATTGGGCCTGCGGCCCATGACCACTAA
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