mRNA_M-pyrifera_M_contig126641.5363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126641.5363.1
Unique NamemRNA_M-pyrifera_M_contig126641.5363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126641.5363.1 vs. uniprot
Match: A0A7V7EAB8_9BACT (PMT_2 domain-containing protein n=2 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V7EAB8_9BACT)

HSP 1 Score: 144 bits (363), Expect = 5.710e-38
Identity = 78/148 (52.70%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:    4 VLLAFWIPVFILTFLVGYRRPRFLFFAYPFYVLLSSVGLVGVVALLLRGRRSLLHGLXXXXXXXXXGRLSLSVVELAHQSLKTASGADVTLARRHPQWKKPTAWVKAHRSDE-AILTTTFLPVYHYVGHVDNWFPNRYTRWEYQESGL 444
            V+L+FW P+  LTFL GYRRPRF++FA+PF+V   S GLV +   + R RRS LHG          GRL+LS   L   S+KTASGADVTLARR PQW+ P  +V  H   E A+L+TT+LP  +YVG VD+WFP+R  + EY E G+
Sbjct:  302 VVLSFWAPLLALTFLYGYRRPRFMYFAFPFWVAGFSYGLVQLGIAVSRARRSWLHGCLAVIILVFGGRLALSTYHLLGDSIKTASGADVTLARRIPQWRAPCRYVGEHLDSETAVLSTTYLPALYYVGRVDDWFPSRLFQNEYWEIGM 449
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BLAST of mRNA_M-pyrifera_M_contig126641.5363.1 vs. uniprot
Match: A0A7Z9HZ92_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9HZ92_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.900e-24
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  205 RLSLSVVELAHQSLKTASGADVTLARRHPQWKKPTAWVKAHR-SDEAILTTTFLPVYHYVGHVDNWFPNRYTRWEYQESG 441
            R+++S   LA  SL+ A GA+VTLAR+HPQW++P  WVK HR +D  ILTTTFLPV HYVG VD+W+P R   WE  ESG
Sbjct:   47 RIAVSFAALAGDSLEYAGGANVTLARKHPQWREPCTWVKEHRQADTVILTTTFLPVMHYVGEVDDWYPTRALWWEIDESG 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126641.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V7EAB8_9BACT5.710e-3852.70PMT_2 domain-containing protein n=2 Tax=Candidatus... [more]
A0A7Z9HZ92_9BACT2.900e-2460.00Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126641contigM-pyrifera_M_contig126641:65..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.5775778-CDS-M-pyrifera_M_contig126641:64..5081622815780.5775778-CDS-M-pyrifera_M_contig126641:64..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126641 65..508 +
1692277566.1315732-CDS-M-pyrifera_M_contig126641:64..5081692277566.1315732-CDS-M-pyrifera_M_contig126641:64..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126641 65..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126641.5363.1prot_M-pyrifera_M_contig126641.5363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126641 65..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126641.5363.1

>prot_M-pyrifera_M_contig126641.5363.1 ID=prot_M-pyrifera_M_contig126641.5363.1|Name=mRNA_M-pyrifera_M_contig126641.5363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MVLLAFWIPVFILTFLVGYRRPRFLFFAYPFYVLLSSVGLVGVVALLLRG
RRSLLHGLVALLALLFLGRLSLSVVELAHQSLKTASGADVTLARRHPQWK
KPTAWVKAHRSDEAILTTTFLPVYHYVGHVDNWFPNRYTRWEYQESGL
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mRNA from alignment at M-pyrifera_M_contig126641:65..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126641.5363.1 ID=mRNA_M-pyrifera_M_contig126641.5363.1|Name=mRNA_M-pyrifera_M_contig126641.5363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig126641:65..508+ (Macrocystis pyrifera P11B4 male)
ATGGTCCTCCTTGCCTTTTGGATTCCGGTCTTCATTCTCACCTTTCTCGT
GGGATACCGGCGCCCCCGCTTCTTGTTCTTTGCCTATCCCTTTTACGTGC
TCCTGTCCAGCGTGGGTCTGGTCGGTGTGGTAGCCCTCCTTCTTCGAGGA
CGTCGTTCGCTGTTGCACGGCCTCGTTGCCCTCCTGGCCCTCTTGTTTCT
GGGCAGGCTCTCCCTTTCCGTCGTGGAACTTGCCCACCAGAGTCTTAAGA
CCGCATCAGGCGCCGACGTCACCCTCGCCCGCCGACACCCCCAATGGAAG
AAGCCGACGGCCTGGGTGAAGGCCCACCGAAGTGATGAGGCGATTCTCAC
CACGACCTTTCTGCCGGTCTATCACTACGTCGGCCACGTGGACAACTGGT
TCCCCAATCGCTACACGCGCTGGGAGTATCAGGAGTCGGGCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126641:65..508+

>mRNA_M-pyrifera_M_contig126641.5363.1 ID=mRNA_M-pyrifera_M_contig126641.5363.1|Name=mRNA_M-pyrifera_M_contig126641.5363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig126641:65..508+ (Macrocystis pyrifera P11B4 male)
ATGGTCCTCCTTGCCTTTTGGATTCCGGTCTTCATTCTCACCTTTCTCGT
GGGATACCGGCGCCCCCGCTTCTTGTTCTTTGCCTATCCCTTTTACGTGC
TCCTGTCCAGCGTGGGTCTGGTCGGTGTGGTAGCCCTCCTTCTTCGAGGA
CGTCGTTCGCTGTTGCACGGCCTCGTTGCCCTCCTGGCCCTCTTGTTTCT
GGGCAGGCTCTCCCTTTCCGTCGTGGAACTTGCCCACCAGAGTCTTAAGA
CCGCATCAGGCGCCGACGTCACCCTCGCCCGCCGACACCCCCAATGGAAG
AAGCCGACGGCCTGGGTGAAGGCCCACCGAAGTGATGAGGCGATTCTCAC
CACGACCTTTCTGCCGGTCTATCACTACGTCGGCCACGTGGACAACTGGT
TCCCCAATCGCTACACGCGCTGGGAGTATCAGGAGTCGGGCCTGATGGTC
CTCCTTGCCTTTTGGATTCCGGTCTTCATTCTCACCTTTCTCGTGGGATA
CCGGCGCCCCCGCTTCTTGTTCTTTGCCTATCCCTTTTACGTGCTCCTGT
CCAGCGTGGGTCTGGTCGGTGTGGTAGCCCTCCTTCTTCGAGGACGTCGT
TCGCTGTTGCACGGCCTCGTTGCCCTCCTGGCCCTCTTGTTTCTGGGCAG
GCTCTCCCTTTCCGTCGTGGAACTTGCCCACCAGAGTCTTAAGACCGCAT
CAGGCGCCGACGTCACCCTCGCCCGCCGACACCCCCAATGGAAGAAGCCG
ACGGCCTGGGTGAAGGCCCACCGAAGTGATGAGGCGATTCTCACCACGAC
CTTTCTGCCGGTCTATCACTACGTCGGCCACGTGGACAACTGGTTCCCCA
ATCGCTACACGCGCTGGGAGTATCAGGAGTCGGGCCTG
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