mRNA_M-pyrifera_M_contig126622.5361.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI001596536C (hybrid sensor histidine kinase/response regulator n=1 Tax=Polaromonas sp. AET17H-212 TaxID=1977061 RepID=UPI001596536C) HSP 1 Score: 145 bits (365), Expect = 1.510e-37 Identity = 81/172 (47.09%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 4 AKGLRLELDVIPVWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQ--------ASARDGTRAFGGLHVLFIDDEPDIRRGVRVLLE 495
AKGL + + V TD +LL R++RNL+ NA K+TAAG++ L + +G+ V + VRD G GI A ++ R+F E +QIGNPERDR++GLGLGL +V RL L L++ L S GRGSTF + L A+ A A+ GT F VL IDDEP +R G+R LLE
Sbjct: 333 AKGLAFRVTALDTEVETDPVLLERVVRNLVDNAFKYTAAGSVMLATE-SGERTVRITVRDTGAGIPAAERERIFGEFYQIGNPERDRSQGLGLGLSIVQRLARLLGLQVELDSEPGRGSTFAITLAHAARSGAASPGAPAPAKTGTPVFDAARVLVIDDEPAVRLGMRTLLE 503
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: A0A2V3TRF8_9HYPH (Histidine kinase n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2V3TRF8_9HYPH) HSP 1 Score: 144 bits (364), Expect = 1.970e-37 Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1
Query: 4 AKGLRLELDVIPVWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQASARDGTR-----AFGGLHVLFIDDEPDIRRGVRVLL 492
AKGLRL P+ V TD +LL R+LRNL+SNAV++T G I +G +R D +A+ + D G GIA ED R+F+E+ Q+GNPERDRT+GLGLGL +V R+C+ L L L S GRGS F + +P A++ A+ DGTR AF V+ IDDE IR + LL
Sbjct: 321 AKGLRLRCRPCPIVVDTDPILLERVLRNLVSNAVRYTLRGGILVGCRRRADR-LAIQIWDTGIGIAPEDMDRIFQEYVQVGNPERDRTKGLGLGLAIVRRICNVLKAPLGLRSCPGRGSCFEVSVPCANE-AALTDGTRQDPPGAFIPAFVVVIDDEAPIREAMEQLL 486
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI001911AC6A (Hybrid sensor histidine kinase/response regulator n=2 Tax=Bacteria TaxID=2 RepID=UPI001911AC6A) HSP 1 Score: 144 bits (362), Expect = 3.710e-37 Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 7 KGLRLELDVIPVWVH--TDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTL--------LLPPASDQASARDGTRAFGGLHVLFIDDEPDIRRGVRVLLED 498
+GLR LD P V TD L+ R+LRNL NA+KFT G I L + RT D +VV D GRGI +QA VFEE +Q+ N ERDRT+GLGLGL +V RLC+ L + L LHSV G+G+T TL LL PA Q ++ T +F GL VL IDDE +R G+RVLLE+
Sbjct: 317 RGLRAVLDA-PTGVRCWTDPALVLRVLRNLTENAIKFTPRGQIALRL-RTVDGMAHIVVEDTGRGIPEAEQAMVFEEFYQVDNSERDRTKGLGLGLSIVRRLCNLLGITLELHSVAGQGTTMTLKVPLETIGLLAPAQAQPAS---TESFAGLTVLVIDDERSVRMGMRVLLEE 485
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI00117DF9F3 (hybrid sensor histidine kinase/response regulator n=1 Tax=Pelomonas sp. KK5 TaxID=1855730 RepID=UPI00117DF9F3) HSP 1 Score: 141 bits (355), Expect = 2.030e-36 Identity = 88/180 (48.89%), Postives = 111/180 (61.67%), Query Frame = 1
Query: 1 VAKGLRLELDV-IPVWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALV-VRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQASARDGT-----------RAFGGLHVLFIDDEPDIRRGVRVLLEDH 501
+AKGLRL LD +V TD LL R+LRNLL NA+K+TA G + + V+R D +V V VRD G GIA +Q RVFEE +Q+ NPERDR RGLGLGL + RL D L L L L S+ G GSTF+L L A+ +A D T RA GL VL +D+E +R ++ LL+ H
Sbjct: 315 LAKGLRLTLDCSAAAFVDTDHHLLGRLLRNLLDNALKYTARGEVAVSVRR--DGEVWRVRVRDTGCGIAPHEQGRVFEEFYQVDNPERDRARGLGLGLSICSRLADLLDLSLGLESMPGEGSTFSLGL--AAAEAPGNDSTPGESAAALLPERALAGLRVLVLDNEAPVREAMQALLQAH 490
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: A0A4R6NAB8_9BURK (Histidine kinase n=1 Tax=Kinneretia asaccharophila TaxID=582607 RepID=A0A4R6NAB8_9BURK) HSP 1 Score: 139 bits (349), Expect = 2.590e-35 Identity = 78/168 (46.43%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 7 KGLRLELDVIP-VWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQASAR-----DGTRAFGGLHVLFIDDEPDIRRGVRVLL 492
KGL + LD P WV +D +LL R++RNL+ NA+K+T G +++ +R G+ + VRD G GIA E+QARVFEE +QIGNPERDR +GLGLGL +V RL D L L L + S G GS F+L + A + + + D T L VL IDDE +R ++ LL
Sbjct: 317 KGLSIYLDCPPQAWVESDPVLLERVVRNLIDNAIKYTQQGAVYINAQRQGEV-WRVQVRDTGIGIAEEEQARVFEEFYQIGNPERDRAKGLGLGLSIVSRLVDLLDLHLEMESEAGVGSCFSLSITAAESRQAVQTPEQDDATLLLSRLRVLVIDDEDQVRGAMQTLL 483
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: A0A4Q7VWF0_9BURK (Histidine kinase n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VWF0_9BURK) HSP 1 Score: 137 bits (346), Expect = 6.570e-35 Identity = 83/171 (48.54%), Postives = 110/171 (64.33%), Query Frame = 1
Query: 4 AKGLRLELDVIP-VWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPP-ASDQASARDG---TRAFGGLHVLFIDDEPDIRRGVRVLLEDH 501
A+GL LELD+ V TD LLL RI+RNL+ NA+K+T G + + ++ G+ + L + D GRGI +QARVFEE +Q+GNP RDR RGLGLGL +V RL D L ++L+L S+ G G+T TL LP A+ +A+ R A G VL IDDE +R G+ LLE H
Sbjct: 328 ARGLGLELDIEGGQHVCTDPLLLERIVRNLIDNALKYTERGQVTVRLRPIGER-LELSIADTGRGIPEHEQARVFEEFYQLGNPGRDRERGLGLGLSIVRRLADLLGIELALKSIFGSGTTVTLQLPVVAAAEAAPRPAPPSAEALRGCRVLVIDDELTVRSGMHALLESH 497
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI001F4C04D7 (hybrid sensor histidine kinase/response regulator n=1 Tax=Pelomonas sp. CA6 TaxID=2907999 RepID=UPI001F4C04D7) HSP 1 Score: 137 bits (344), Expect = 1.300e-34 Identity = 79/170 (46.47%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 7 KGLRLELDVIP-VWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQASARDGTRAFGG----LHVLFIDDEPDIRRGVRVLLEDH 501
K L L LD + TD +LL R+LRNL+ NA+K+T G + + V GD L VRD G GI ++QAR+FEE +Q+GNPERDR++GLGLGL +V RL D + L L+L S G+GS+F+L +P A +AR G G L VL +D+E +R +R LLE H
Sbjct: 315 KRLSLRLDCPEQACIETDPVLLDRVLRNLIDNAIKYTTEGEVAVEVSGGGDL-WRLAVRDTGPGIPEQEQARIFEEFYQLGNPERDRSKGLGLGLSIVSRLVDLMELHLALRSAPGQGSSFSLSIPAAEFAHAARSGDAPTGPALPPLRVLVVDEEEPVRLAMRSLLESH 483
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI001D00F37E (ATP-binding protein n=1 Tax=Shinella sp. XGS7 TaxID=2877941 RepID=UPI001D00F37E) HSP 1 Score: 135 bits (341), Expect = 3.390e-34 Identity = 76/168 (45.24%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 7 KGLRLELDVIP-VWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQA-----SARDGTRAFGGLHVLFIDDEPDIRRGVRVLL 492
KGL + LD P WV +D +LL R++RNL+ NA+K+T G I++ +R G+ + VRD G GIA +++ARVFEE +QIGNPERDR +GLGLGL +V RL D L L L + S G GS F+L + A + + +G + L VL IDDE +R ++ LL
Sbjct: 316 KGLTIYLDCPPQAWVESDPVLLERVVRNLIDNAIKYTQQGAIYINAQRQGEL-WRVQVRDTGIGIAEDEKARVFEEFYQIGNPERDRAKGLGLGLSIVSRLVDLLDLHLEMESEFGVGSCFSLSITAAESRQPVQALGSEEGAQLLSTLRVLVIDDEDQVRSAMQTLL 482
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: A0A4Q3LJB2_9BURK (Histidine kinase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3LJB2_9BURK) HSP 1 Score: 135 bits (340), Expect = 4.490e-34 Identity = 87/172 (50.58%), Postives = 109/172 (63.37%), Query Frame = 1
Query: 7 KGLRLELDVIPVWVH--TDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALV-VRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPAS-----DQASARDGTRAFGGLHVLFIDDEPDIRRGVRVLLED 498
KGLR LDV PV V TD L+ R+LRNL NA+KFT G I L ++ +N AL+ V D GRGI ++QA VFEE +Q+ NPERDRT+GLGLGL +V RLC L + L L S G+G+ TL LP S +A ++F GL VL IDDE +R G+RVLLE+
Sbjct: 316 KGLRPMLDV-PVGVRCWTDPALVLRVLRNLTENAIKFTQQGQITLRLRV--ENGTALISVEDTGRGIPPDEQAMVFEEFYQVDNPERDRTKGLGLGLSIVRRLCSLLGITLDLRSQGGQGTCVTLRLPLESYGLIAPPPAAPADHQSFRGLTVLVIDDERSVRLGMRVLLEE 484
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Match: UPI00141F5983 (hybrid sensor histidine kinase/response regulator n=1 Tax=Aestuariicella hydrocarbonica TaxID=1470433 RepID=UPI00141F5983) HSP 1 Score: 134 bits (337), Expect = 1.150e-33 Identity = 78/169 (46.15%), Postives = 108/169 (63.91%), Query Frame = 1
Query: 1 VAKGLRLELD-VIPVWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTGDNDVALVVRDEGRGIAAEDQARVFEEHFQIGNPERDRTRGLGLGLFVVGRLCDTLSLKLSLHSVTGRGSTFTLLLPPASDQASARDGT---RAFGGLHVLFIDDEPDIRRGVRVLLE 495
+ KGL++ LD +V+TD +LL RI+RNLL+NA+K+T G I L V+ N V L ++D GRGI E+Q VFEE +Q+ NPERD T+GLGLGL +V RL D L L LS+ S+ G G+ FT+ LP +S + T ++ L L IDDE ++ G++ LLE
Sbjct: 315 INKGLKVWLDCAADAFVNTDEILLERIVRNLLANAIKYTERGRIELCVEHKY-NKVVLTIKDSGRGIPLEEQDHVFEEFYQLHNPERDHTKGLGLGLAIVKRLADLLELDLSMDSMIGSGTVFTMCLPASSVMPQTQRPTVNNLSWDSLCALVIDDEHEVGLGMKALLE 482 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126622.5361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126622.5361.1 >prot_M-pyrifera_M_contig126622.5361.1 ID=prot_M-pyrifera_M_contig126622.5361.1|Name=mRNA_M-pyrifera_M_contig126622.5361.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp VAKGLRLELDVIPVWVHTDRLLLSRILRNLLSNAVKFTAAGTIFLGVKRTback to top mRNA from alignment at M-pyrifera_M_contig126622:5..505+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126622.5361.1 ID=mRNA_M-pyrifera_M_contig126622.5361.1|Name=mRNA_M-pyrifera_M_contig126622.5361.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig126622:5..505+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126622:5..505+ >mRNA_M-pyrifera_M_contig126622.5361.1 ID=mRNA_M-pyrifera_M_contig126622.5361.1|Name=mRNA_M-pyrifera_M_contig126622.5361.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig126622:5..505+ (Macrocystis pyrifera P11B4 male)back to top |