mRNA_M-pyrifera_M_contig126619.5360.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126619.5360.1
Unique NamemRNA_M-pyrifera_M_contig126619.5360.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: D2VF35_NAEGR (GTP binding protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VF35_NAEGR)

HSP 1 Score: 152 bits (383), Expect = 4.910e-40
Identity = 79/154 (51.30%), Postives = 103/154 (66.88%), Query Frame = 1
Query:   10 RLSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGN-HELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVT-DSVLAARIPNCKG 465
            + SKPNILL+G +G+GKSSLVNAVFGKS A  G G+PVT+  T+YA E   VV+YD+RG+EHG   + F+ +T  F K+     DL  H+HVVWYVLD++ +RFQ FEAE CR     I I F+LNK D     Q+R +  D++    +PNC G
Sbjct:  186 KTSKPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPVTQQYTKYAGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRGEKDLAKHVHVVWYVLDLTQARFQPFEAEFCRDELKGIPIIFVLNKADAVKN-QIRDIMIDTIANFNLPNCIG 338          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: D2VEP0_NAEGR (G domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEP0_NAEGR)

HSP 1 Score: 149 bits (377), Expect = 7.410e-40
Identity = 70/149 (46.98%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   19 KPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            KPNIL+ G TGAGKSSLVNAVFG+  A  G+G PVT+H  +Y P ++ VV+YD++GLE  +HE FI+ET  F  +    PD+T HIHVVWYV++ +  RF+ FEAE+ R +F+   + F+LNK D +   Q++++   +   ++ + KG
Sbjct:   60 KPNILVAGITGAGKSSLVNAVFGEELARAGAGMPVTQHFQKYEPSDKPVVIYDSKGLEWNSHEEFIKETGKFFMQLRQSPDVTNHIHVVWYVVNTARGRFENFEAEVVREVFSPTPVIFVLNKSDLADTTQLKAIKKVIEDEKLEHNKG 208          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: A0A6A5C5G3_NAEFO (G domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C5G3_NAEFO)

HSP 1 Score: 149 bits (375), Expect = 1.750e-39
Identity = 70/149 (46.98%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   19 KPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            KPNIL+ G TGAGKSSLVNAVFG+  A  G+G PVT+H  +Y P ++ VV+YD++GLE  +HE FI+ET  F  E    PD+  HIHVVWYV++ +  RF+ FEAE+ R +FA   + F+LNK D + + Q++++   +   ++ + +G
Sbjct:   61 KPNILVAGITGAGKSSLVNAVFGEELARAGAGMPVTQHFQKYEPNDKPVVIYDSKGLEWNSHEEFIKETGKFFMELRQSPDVANHIHVVWYVVNTARGRFENFEAEVVREVFAPTPVIFVLNKSDLADSIQLKAIKKVIEDEKLEHNRG 209          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: A0A6B2L5G6_9EUKA (G domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5G6_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 2.260e-38
Identity = 67/157 (42.68%), Postives = 104/157 (66.24%), Query Frame = 1
Query:    1 LKARLSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSG--PDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            + +RL KPN+L+ G TGAGKSSLVN++FG + A TG+G P+T+H T+Y  E+  VV+YD++GLEHG ++ FI+ T  F    + G  P+L   IHV+WY+++ +HSR++ FE ++CR +  +  + F+LNK D S+      +   +    +PN KG
Sbjct:   19 VSSRLQKPNVLITGITGAGKSSLVNSIFGNNIAETGTGVPLTQHFTKYESEDMRVVIYDSKGLEHGEYDNFIQNTNQFFNSLSPGAVPELD-SIHVIWYIVNSAHSRWEPFEEKICREILNKAPLMFVLNKADLSTKKDKEGIKKIIRNLHLPNFKG 174          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: A0A6B2L5C1_9EUKA (G domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5C1_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 1.260e-37
Identity = 69/152 (45.39%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   13 LSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGP-DLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            L KPN+L+ G TGAGKSSL+NA+FGK+ A TG+G P+T+H T+Y  ++  VV+YD++GLEHG  E F+  T  F +    G    T  IHVVWY+++ +HSR++ FE  +CR+L     + F+LNK D SS    + +   +   R+P+CKG
Sbjct:    7 LLKPNVLITGITGAGKSSLINAIFGKNVAETGTGVPLTQHFTKYESDDMRVVIYDSKGLEHGEFEDFMNTTDHFFESHKPGTVSETDTIHVVWYIVNSAHSRWEPFEEVICRKLLNRAPLMFVLNKADISSPRDRKGMKKLIHDMRLPHCKG 158          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: A0A6A5C446_NAEFO (G domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C446_NAEFO)

HSP 1 Score: 142 bits (359), Expect = 1.290e-36
Identity = 70/150 (46.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   19 KPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGN-HELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            KPNILL+G +G+GKSSLVNAVFGKS A  G G+P+T+  T+Y  E   VV+YD+RG+EHG   + F+ +T  F K+      L+ H+HVVWYV+D++ +RFQ FEAE C+     I I F+LNK D         + +++    +PNC G
Sbjct:  189 KPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPITQRYTKYTGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRQEESLSKHVHVVWYVIDLTQARFQPFEAEFCKEELKGIPIIFVLNKADAVKDDIRDIMIETIAKFNLPNCIG 338          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: UPI001CFEBF70 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEBF70)

HSP 1 Score: 142 bits (358), Expect = 1.750e-36
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   19 KPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGN-HELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            KPNILL+G +G+GKSSLVNAVFGKS A  G G+P+T+  T+Y  E   VV+YD+RG+EHG   + F+ +T  F K+      L  H+HVVWYV+D++ +RFQ FEAE C+     I I F+LNK D         + +++    +PNC G
Sbjct:  203 KPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPITQRYTKYTGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRQEESLAKHVHVVWYVIDLTQARFQPFEAEFCKEELKGIPIIFVLNKADAVKDNVRDIMIETIANFNLPNCIG 352          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: L8GY39_ACACA (Miro family protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY39_ACACA)

HSP 1 Score: 134 bits (338), Expect = 2.110e-36
Identity = 71/154 (46.10%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    1 LKARLSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCK 462
            L   L KPNILL+GKTGAGKSSL+NAVFG  FA TGSG+PVT+HL +Y  +   VV+YDT GLEHG+ + F+ +   F+  +N   D                    +FEA LC  +F ++ IF ILNK DT+S  Q R V + +L+ ++ NCK
Sbjct:   45 LSHNLRKPNILLVGKTGAGKSSLINAVFGARFAETGSGQPVTQHLQKY--DSGQVVIYDTVGLEHGSSDQFVNDVKQFIATSNKSSD--------------------SFEANLCNTIFGDLPIFIILNKADTASPEQARIVKNQILSLKLSNCK 176          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: L8GJC7_ACACA (G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJC7_ACACA)

HSP 1 Score: 137 bits (346), Expect = 4.570e-36
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    7 ARLSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGPDLTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            A + KPN+L+ G TGAGKSSLVNA+FG+  A  G G+P+T+H +RYAP++  VVVYD++GLE G HE F+ +   FL++  S P+L  HIH++WYV++   +R + FEA L + +FA           D +SA Q+  + +S+      NC+G
Sbjct:   34 ANVKKPNVLVSGVTGAGKSSLVNAIFGEGMAKVGVGKPLTQHFSRYAPDDMPVVVYDSKGLEQGFHEEFVADAKEFLEKIKSQPELGDHIHIIWYVINAGSARIEPFEAFLIKEIFAP---------ADIASAEQLNELEESIKQYEFTNCRG 177          
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Match: A0A7S4I3C9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I3C9_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 2.910e-31
Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 1
Query:   13 LSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAPEEESVVVYDTRGLEHGNH-ELFIEETVAFLKETNSGPD---LTLHIHVVWYVLDMSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARIPNCKG 465
            L +P +L+ G  GAGKSS++N +FG   A  G+G PVT+H  R+ PEE+ +++YD++GLE G   + FI+ T ++  + N G +   +   I VVWY+++ + +RFQ FE ++C+ LF E+ I FILNK D S+  Q +++   +    + NC G
Sbjct:   62 LKRPKVLIAGVAGAGKSSIINTIFGSEMAKEGAGRPVTQHFQRFEPEEKPIILYDSKGLEVGMQLDEFIQSTRSYFTQLNDGEEERCMEQQIDVVWYIVNSAAARFQDFEEQICKELFKELPIIFILNKSDISTKEQRQALRKVIKEMNLNNCIG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126619.5360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VF35_NAEGR4.910e-4051.30GTP binding protein n=1 Tax=Naegleria gruberi TaxI... [more]
D2VEP0_NAEGR7.410e-4046.98G domain-containing protein n=1 Tax=Naegleria grub... [more]
A0A6A5C5G3_NAEFO1.750e-3946.98G domain-containing protein n=2 Tax=Naegleria TaxI... [more]
A0A6B2L5G6_9EUKA2.260e-3842.68G domain-containing protein n=1 Tax=Arcella interm... [more]
A0A6B2L5C1_9EUKA1.260e-3745.39G domain-containing protein n=1 Tax=Arcella interm... [more]
A0A6A5C446_NAEFO1.290e-3646.67G domain-containing protein n=1 Tax=Naegleria fowl... [more]
UPI001CFEBF701.750e-3646.67uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
L8GY39_ACACA2.110e-3646.10Miro family protein (Fragment) n=1 Tax=Acanthamoeb... [more]
L8GJC7_ACACA4.570e-3643.79G domain-containing protein n=1 Tax=Acanthamoeba c... [more]
A0A7S4I3C9_9EUKA2.910e-3139.35Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126619contigM-pyrifera_M_contig126619:43..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.0
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog1173024.KI912148_gene3175
KEGG koko:K06946
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.protein domain associated with
EggNOG OGs1G3RU@1117,COG3596@1,COG3596@2,COG3597@1,COG3597@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.429979-CDS-M-pyrifera_M_contig126619:42..5071622815780.429979-CDS-M-pyrifera_M_contig126619:42..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126619 43..507 -
1692277566.0819705-CDS-M-pyrifera_M_contig126619:42..5071692277566.0819705-CDS-M-pyrifera_M_contig126619:42..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126619 43..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126619.5360.1prot_M-pyrifera_M_contig126619.5360.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126619 43..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126619.5360.1

>prot_M-pyrifera_M_contig126619.5360.1 ID=prot_M-pyrifera_M_contig126619.5360.1|Name=mRNA_M-pyrifera_M_contig126619.5360.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
LKARLSKPNILLIGKTGAGKSSLVNAVFGKSFAATGSGEPVTKHLTRYAP
EEESVVVYDTRGLEHGNHELFIEETVAFLKETNSGPDLTLHIHVVWYVLD
MSHSRFQAFEAELCRRLFAEIAIFFILNKVDTSSAAQVRSVTDSVLAARI
PNCKG
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mRNA from alignment at M-pyrifera_M_contig126619:43..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126619.5360.1 ID=mRNA_M-pyrifera_M_contig126619.5360.1|Name=mRNA_M-pyrifera_M_contig126619.5360.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig126619:43..507- (Macrocystis pyrifera P11B4 male)
CTGAAGGCGCGGCTGAGCAAGCCCAACATCCTCCTCATCGGCAAGACGGG CGCAGGAAAGTCCTCGCTCGTCAACGCTGTGTTTGGAAAGAGCTTCGCGG CCACGGGGAGCGGCGAGCCCGTGACGAAGCACCTGACCCGCTACGCGCCC GAGGAAGAGAGTGTGGTGGTGTACGACACCAGGGGCCTCGAGCACGGCAA CCACGAGCTCTTCATCGAGGAAACGGTCGCCTTCCTCAAGGAGACGAACA GCGGCCCCGACCTCACCCTCCACATCCACGTCGTGTGGTATGTGCTCGAC ATGTCCCATTCCCGCTTCCAGGCCTTCGAGGCAGAGCTCTGCAGGCGCCT CTTCGCGGAGATCGCGATCTTCTTCATCCTCAACAAGGTCGACACCAGCA GCGCCGCCCAAGTCCGCTCCGTCACCGACTCGGTCCTCGCCGCACGCATT CCCAACTGCAAAGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126619:43..507-

>mRNA_M-pyrifera_M_contig126619.5360.1 ID=mRNA_M-pyrifera_M_contig126619.5360.1|Name=mRNA_M-pyrifera_M_contig126619.5360.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig126619:43..507- (Macrocystis pyrifera P11B4 male)
CTGAAGGCGCGGCTGAGCAAGCCCAACATCCTCCTCATCGGCAAGACGGG
CGCAGGAAAGTCCTCGCTCGTCAACGCTGTGTTTGGAAAGAGCTTCGCGG
CCACGGGGAGCGGCGAGCCCGTGACGAAGCACCTGACCCGCTACGCGCCC
GAGGAAGAGAGTGTGGTGGTGTACGACACCAGGGGCCTCGAGCACGGCAA
CCACGAGCTCTTCATCGAGGAAACGGTCGCCTTCCTCAAGGAGACGAACA
GCGGCCCCGACCTCACCCTCCACATCCACGTCGTGTGGTATGTGCTCGAC
ATGTCCCATTCCCGCTTCCAGGCCTTCGAGGCAGAGCTCTGCAGGCGCCT
CTTCGCGGAGATCGCGATCTTCTTCATCCTCAACAAGGTCGACACCAGCA
GCGCCGCCCAAGTCCGCTCCGTCACCGACTCGGTCCTCGCCGCACGCATT
CCCAACTGCAAAGGTCTGAAGGCGCGGCTGAGCAAGCCCAACATCCTCCT
CATCGGCAAGACGGGCGCAGGAAAGTCCTCGCTCGTCAACGCTGTGTTTG
GAAAGAGCTTCGCGGCCACGGGGAGCGGCGAGCCCGTGACGAAGCACCTG
ACCCGCTACGCGCCCGAGGAAGAGAGTGTGGTGGTGTACGACACCAGGGG
CCTCGAGCACGGCAACCACGAGCTCTTCATCGAGGAAACGGTCGCCTTCC
TCAAGGAGACGAACAGCGGCCCCGACCTCACCCTCCACATCCACGTCGTG
TGGTATGTGCTCGACATGTCCCATTCCCGCTTCCAGGCCTTCGAGGCAGA
GCTCTGCAGGCGCCTCTTCGCGGAGATCGCGATCTTCTTCATCCTCAACA
AGGTCGACACCAGCAGCGCCGCCCAAGTCCGCTCCGTCACCGACTCGGTC
CTCGCCGCACGCATTCCCAACTGCAAAGGT
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