mRNA_M-pyrifera_M_contig126617.5359.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126617.5359.1
Unique NamemRNA_M-pyrifera_M_contig126617.5359.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126617.5359.1 vs. uniprot
Match: A0A7Y2IET2_9ACTN (AAA family ATPase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IET2_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 2.910e-10
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    1 AEQWFTGAIEFAPADALP-MVYFGRAKARAEQRNVSGTRSDLDLLASLEFDDPSLRAKALVVRGDIDAKAGDYDHSVESLTKAIQQLHGLGDLAAESAALR 300
            AE WF+  IE A  D    M+YFGRA+AR E   +   R DL+ L S    D  LRA+AL+VRG+++ ++ +   +   L +A  +L  LG+ A ++ ALR
Sbjct:  670 AESWFSSGIELAADDETKAMMYFGRAQARLEVGALRSAREDLEELESFVDTDDVLRARALLVRGNLERRSRNPAEAAAILREAADRLAALGEFAEQALALR 770
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126617.5359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2IET2_9ACTN2.910e-1039.60AAA family ATPase n=1 Tax=Acidimicrobiales bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126617contigM-pyrifera_M_contig126617:2..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.3949711-CDS-M-pyrifera_M_contig126617:1..3011622815780.3949711-CDS-M-pyrifera_M_contig126617:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126617 2..301 +
1692277566.067439-CDS-M-pyrifera_M_contig126617:1..3011692277566.067439-CDS-M-pyrifera_M_contig126617:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126617 2..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126617.5359.1prot_M-pyrifera_M_contig126617.5359.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126617 2..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126617.5359.1

>prot_M-pyrifera_M_contig126617.5359.1 ID=prot_M-pyrifera_M_contig126617.5359.1|Name=mRNA_M-pyrifera_M_contig126617.5359.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
AEQWFTGAIEFAPADALPMVYFGRAKARAEQRNVSGTRSDLDLLASLEFD
DPSLRAKALVVRGDIDAKAGDYDHSVESLTKAIQQLHGLGDLAAESAALR
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mRNA from alignment at M-pyrifera_M_contig126617:2..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126617.5359.1 ID=mRNA_M-pyrifera_M_contig126617.5359.1|Name=mRNA_M-pyrifera_M_contig126617.5359.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig126617:2..301+ (Macrocystis pyrifera P11B4 male)
GCCGAGCAGTGGTTCACCGGAGCGATCGAGTTCGCACCGGCCGACGCACT
GCCGATGGTGTACTTCGGGCGGGCGAAAGCGCGTGCCGAGCAGCGAAACG
TCAGCGGCACCCGCTCCGACCTCGACCTGCTCGCATCGCTCGAGTTCGAC
GATCCCTCACTCCGAGCGAAGGCACTCGTCGTCCGGGGAGACATCGACGC
GAAGGCCGGAGACTACGACCACTCGGTCGAGTCGCTGACCAAGGCCATCC
AGCAACTCCACGGTCTGGGCGATCTCGCAGCAGAGTCGGCCGCCCTTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126617:2..301+

>mRNA_M-pyrifera_M_contig126617.5359.1 ID=mRNA_M-pyrifera_M_contig126617.5359.1|Name=mRNA_M-pyrifera_M_contig126617.5359.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig126617:2..301+ (Macrocystis pyrifera P11B4 male)
GCCGAGCAGTGGTTCACCGGAGCGATCGAGTTCGCACCGGCCGACGCACT
GCCGATGGTGTACTTCGGGCGGGCGAAAGCGCGTGCCGAGCAGCGAAACG
TCAGCGGCACCCGCTCCGACCTCGACCTGCTCGCATCGCTCGAGTTCGAC
GATCCCTCACTCCGAGCGAAGGCACTCGTCGTCCGGGGAGACATCGACGC
GAAGGCCGGAGACTACGACCACTCGGTCGAGTCGCTGACCAAGGCCATCC
AGCAACTCCACGGTCTGGGCGATCTCGCAGCAGAGTCGGCCGCCCTTCGC
GCCGAGCAGTGGTTCACCGGAGCGATCGAGTTCGCACCGGCCGACGCACT
GCCGATGGTGTACTTCGGGCGGGCGAAAGCGCGTGCCGAGCAGCGAAACG
TCAGCGGCACCCGCTCCGACCTCGACCTGCTCGCATCGCTCGAGTTCGAC
GATCCCTCACTCCGAGCGAAGGCACTCGTCGTCCGGGGAGACATCGACGC
GAAGGCCGGAGACTACGACCACTCGGTCGAGTCGCTGACCAAGGCCATCC
AGCAACTCCACGGTCTGGGCGATCTCGCAGCAGAGTCGGCCGCCCTTCGC
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