mRNA_M-pyrifera_M_contig1266.5353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1266.5353.1
Unique NamemRNA_M-pyrifera_M_contig1266.5353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: D8LTW6_ECTSI (40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTW6_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.140e-22
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:  971 QMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE 1132
            +MKLITASGLVERLKVNGSLARAAIRELE KGLIRKVDAHHAQVIYTRATNVEE
Sbjct:   57 KMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A0A835ZCY0_9STRA (40S ribosomal protein S25 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.800e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  971 QMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVE 1129
            +MKL+T S LVERLK+NGSLARAAIRELE KG+IR+V  H AQ++YTRATN E
Sbjct:   57 KMKLVTTSALVERLKINGSLARAAIRELEEKGVIRRVSHHSAQLVYTRATNTE 109
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: W7TVF9_9STRA (40S ribosomal protein S25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVF9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.030e-13
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:  953 LISRSHQMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE 1132
            L++   + KLIT S LVERLK+NGSLARAA+REL+ KGLI+ V  HH+Q+IYTRAT   E
Sbjct:   52 LLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A0A2D4BEC3_PYTIN (40S ribosomal protein S25 n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BEC3_PYTIN)

HSP 1 Score: 76.3 bits (186), Expect = 3.880e-13
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:  971 QMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE 1132
            +MKLI+AS +VERLKVN +LARA+I ELE KGLI+KV +HHAQ+IYTRAT  +E
Sbjct:   58 KMKLISASAIVERLKVNAALARASIHELEEKGLIQKVLSHHAQLIYTRATAAQE 111
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A0A7S3PJ15_9STRA (40S ribosomal protein S25 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJ15_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.480e-13
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  953 LISRSHQMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATN 1123
            L++   +MKLIT S +VERLKV GSLARAAIRELEGKGLIR+V  H  Q IYTRATN
Sbjct:   51 LLTDVTKMKLITPSTIVERLKVTGSLARAAIRELEGKGLIREVLNHRKQRIYTRATN 107
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A8E6C7_9BILA (40S ribosomal protein S25 n=1 Tax=Spadella cephaloptera TaxID=52888 RepID=A8E6C7_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-12
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:  977 KLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRAT 1120
            KLIT S + ERLK+ GSLARAA++ELE KGLI+KVDAHHAQ+IYTR T
Sbjct:   60 KLITPSVVSERLKIRGSLARAALKELESKGLIKKVDAHHAQIIYTRNT 107
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: M4BE44_HYAAE (40S ribosomal protein S25 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BE44_HYAAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.860e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  971 QMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE 1132
            +MKLITAS +VERLKVN +LARA+I ELE  G I KV  HHAQ+IYTRA  VEE
Sbjct:   41 KMKLITASAIVERLKVNAALARASIHELEENGSISKVLGHHAQLIYTRAVAVEE 94
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BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A0A0P5BXG7_9CRUS (40S ribosomal protein S25 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5BXG7_9CRUS)

HSP 1 Score: 73.2 bits (178), Expect = 3.190e-12
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  971 QMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE 1132
            +MKLI+AS +VERLKV  SLARA+IREL  KGLI+KV +HHAQ+IYTRA+  EE
Sbjct:   45 KMKLISASAVVERLKVTASLARASIRELTEKGLIQKVLSHHAQLIYTRASAQEE 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: F0WED2_9STRA (40S ribosomal protein S25 n=2 Tax=Albugo TaxID=65356 RepID=F0WED2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-12
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2 
Query:  953 LISRSHQMKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRA-TNVEE 1132
            L+S   +MKLITAS +VERLKVN +LAR++IR+LE  G I +V AHH Q+IYTRA TN EE
Sbjct:   52 LLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAEE 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Match: A0A0L0H464_SPIPD (40S ribosomal protein S25 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H464_SPIPD)

HSP 1 Score: 73.2 bits (178), Expect = 6.090e-12
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  977 KLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATNVEE*S*RG 1147
            KL+T S LV+RL++NGSLAR AIRELE KGLIR VD H++Q+IYTRAT  ++   +G
Sbjct:   56 KLVTPSVLVDRLRINGSLARIAIRELEAKGLIRLVDHHNSQLIYTRATKADDVEEKG 112
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1266.5353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW6_ECTSI8.140e-2296.3040S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID... [more]
A0A835ZCY0_9STRA8.800e-1573.5840S ribosomal protein S25 n=2 Tax=Tribonema minus ... [more]
W7TVF9_9STRA2.030e-1363.3340S ribosomal protein S25 n=2 Tax=Monodopsidaceae ... [more]
A0A2D4BEC3_PYTIN3.880e-1370.3740S ribosomal protein S25 n=3 Tax=Pythium TaxID=47... [more]
A0A7S3PJ15_9STRA6.480e-1371.9340S ribosomal protein S25 n=1 Tax=Aplanochytrium s... [more]
A8E6C7_9BILA1.990e-1275.0040S ribosomal protein S25 n=1 Tax=Spadella cephalo... [more]
M4BE44_HYAAE2.860e-1270.3740S ribosomal protein S25 n=1 Tax=Hyaloperonospora... [more]
A0A0P5BXG7_9CRUS3.190e-1270.3740S ribosomal protein S25 n=1 Tax=Daphnia magna Ta... [more]
F0WED2_9STRA3.420e-1263.9340S ribosomal protein S25 n=2 Tax=Albugo TaxID=653... [more]
A0A0L0H464_SPIPD6.090e-1263.1640S ribosomal protein S25 n=2 Tax=Spizellomyces Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1266contigM-pyrifera_M_contig1266:1265..3100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D8LTW6
Preferred nameRPS25
KEGG rclassRC00109,RC00110,RC00158,RC00219,RC00332
KEGG koko:K02975,ko:K10886,ko:K13998,ko:K20365
KEGG ReactionR00936,R00937,R00939,R00940,R02101,R02235,R02236
KEGG Pathwayko00240,ko00670,ko00790,ko01100,ko03010,ko03450,map00240,map00670,map00790,map01100,map03010,map03450
KEGG ModuleM00053,M00126,M00177,M00179,M00841
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009506,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042274,GO:0042594,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990928
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4901@1,KOG1767@2759
Ec32 ortholog description40S ribosomal protein S25
Ec32 orthologEc-12_004050.1
EC1.5.1.3,2.1.1.45
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03400,ko04131
Exons2
Model size992
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1266.5353.1prot_M-pyrifera_M_contig1266.5353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1266 2238..2399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.001327-UTR-M-pyrifera_M_contig1266:1264..13931622815780.001327-UTR-M-pyrifera_M_contig1266:1264..1393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1266 1265..1393 +
1692277565.8238883-UTR-M-pyrifera_M_contig1266:1264..13931692277565.8238883-UTR-M-pyrifera_M_contig1266:1264..1393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1266 1265..1393 +
1622815780.023555-UTR-M-pyrifera_M_contig1266:2399..31001622815780.023555-UTR-M-pyrifera_M_contig1266:2399..3100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1266 2400..3100 +
1692277565.8467166-UTR-M-pyrifera_M_contig1266:2399..31001692277565.8467166-UTR-M-pyrifera_M_contig1266:2399..3100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1266 2400..3100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.011952-CDS-M-pyrifera_M_contig1266:2237..23991622815780.011952-CDS-M-pyrifera_M_contig1266:2237..2399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 2238..2399 +
1692277565.8368642-CDS-M-pyrifera_M_contig1266:2237..23991692277565.8368642-CDS-M-pyrifera_M_contig1266:2237..2399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 2238..2399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1266.5353.1

>prot_M-pyrifera_M_contig1266.5353.1 ID=prot_M-pyrifera_M_contig1266.5353.1|Name=mRNA_M-pyrifera_M_contig1266.5353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MKLITASGLVERLKVNGSLARAAIRELEGKGLIRKVDAHHAQVIYTRATN
VEE*
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mRNA from alignment at M-pyrifera_M_contig1266:1265..3100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1266.5353.1 ID=mRNA_M-pyrifera_M_contig1266.5353.1|Name=mRNA_M-pyrifera_M_contig1266.5353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at M-pyrifera_M_contig1266:1265..3100+ (Macrocystis pyrifera P11B4 male)
TCTGCTCTTGTTGGCGACTGTCTTTGTCGAGAGCAGAAGTGGTCCAAGGG
AAAGGTCAGGGAGAAAGTGGCCAACCAGGTGCTTTTCAACGAGGACACGT
ACGTCCGTTGCCTGGCGGAGGTGCCCAAGGTGAGACGCATTATGTCGTAC
AAAGCCCTTTCTTCCGCGAGCTATTTTTTCTTTTTTGGGTACGAATGCCA
TCCATGTACTCTATGTATAGTACAACATCAGTAGGCAGTTGGTCTAGTCG
ACACGCCCCTTCATCATTGCATGATCTCTCTTCCCGTCCTTCCTGCTTAT
GTCTCTTGTGTCTTATTGGAGCTTGGGCAAGCGACGTTGATATTTCTTAA
CGGTCGTGTATCATCATTTCTACCTATACTCTCATCGGTTGACATGTTTG
TGAGAGTCACGTATAGTTTCTTTCTCGTCGTTTTGGCGCACGAATTATGC
TGACGAAGGATTTGATGTATCCGTGTCACGCTTGTAAGAAGCGAGGCACT
TGGTGTATTTGGTTTTTTTTTCGCTGTCTGAGGTCGTTTAGTGTGCTGTC
GGCTGCTTGCATTCTTAAATAGGGAACGTTTTGTCCCAGATTGTAACGTT
TTGGCCAGATTTATAGACAGACTTTTGGTGTTGGGTCTCGAAGTCCTTTT
TTTACTTTTGCTAATGTGTGTGCGCGTATTCTCTACATGCAACCCTTCTG
TCGTGTATGGGTGTGCGTGTGTTGTTCATATTAAACCTTCCTTTCTACCC
GTGGACATCCATCACACCCAGTGTCCGTGTCGAGTCGCCGTCCTAAAGAG
ACATGCACAAGCTCTGTGGTTACAAAACCACGACGCAGAGATATTAACGT
AGTAATGCAGTAAGGAGAGTAGGCATTGCAATATCATGCCACATTCTGGG
TACGCATGTATACCGACCCTATCACCGCGTCCGTTTCGTTGTGTTTGTTG
CTTTGATTTCTCGCTCGCATCAGATGAAGCTCATCACGGCGTCCGGATTG
GTCGAGCGCCTGAAGGTCAACGGATCGTTGGCACGGGCCGCGATCCGCGA
GCTTGAGGGCAAGGGGCTCATCCGGAAGGTCGACGCGCACCACGCGCAGG
TCATCTACACGCGCGCGACTAACGTCGAAGAGTAGAGCTGAAGAGGATGG
TGCTGCGAAATGTAGCACGTTCTCTTCAATTCAAATTACCTTCGGGTTAG
TTCGTGTTTTTCTTATTCCCAGTCTGGCGCATCACCATCTCCGCGGAGTG
GGGTTGGGTGCTGAGGGAAAATGGACGCGTGGGGGGTGAAAAAGGGGCGG
TGCAGGAAGGGTGGGGTGTGGGATGGAGCGCGGCAGTGTCGCTAGGTTAG
CGGACTTTTGCTGCTACATTTCTGCGTTCTGGCCTCGTTGCGCTGATGAG
TGAGCTACGGTTCGCACGCGACGTGTCTTTTCACGTCTACGTTACAACCG
GGTGCAATAATGGAACGTTTTTCAGCGTGTGGAGTTAGTTTTTGGTGGTT
ACCGTTATGTCGAATTTAGTATCGTGTGGCTCGCACTATTTTCGTGCTGA
TATCCATGGTTTCAATGTGGCTGGATCAATCTTGCATCCCTTGTGTGCTT
TTAGACGCGTGGAACTTGCAGCAAGTGCTCTAGTCCTCTCACCCTGGTGA
CTCGACCACTCCCTGCCGTTGTTTTTTGTAGTTGCGGTGTCGAATATCTG
GTGTGTACCTTCTGTGTCCGTCAGCTACTTCTCTCATTGACTTGCCCCAG
CACCATGTCGAGCCCGGTCCATGATCTAATGACGTAATAGTTATCGCGAG
TTGTCGCAAGGTCATAATCCAAAGGCCATCAAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1266:1265..3100+

>mRNA_M-pyrifera_M_contig1266.5353.1 ID=mRNA_M-pyrifera_M_contig1266.5353.1|Name=mRNA_M-pyrifera_M_contig1266.5353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig1266:1265..3100+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTCATCACGGCGTCCGGATTGGTCGAGCGCCTGAAGGTCAACGG
ATCGTTGGCACGGGCCGCGATCCGCGAGCTTGAGGGCAAGGGGCTCATCC
GGAAGGTCGACGCGCACCACGCGCAGGTCATCTACACGCGCGCGACTAAC
GTCGAAGAGTAGATGAAGCTCATCACGGCGTCCGGATTGGTCGAGCGCCT
GAAGGTCAACGGATCGTTGGCACGGGCCGCGATCCGCGAGCTTGAGGGCA
AGGGGCTCATCCGGAAGGTCGACGCGCACCACGCGCAGGTCATCTACACG
CGCGCGACTAACGTCGAAGAGTAG
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