mRNA_M-pyrifera_M_contig12656.5349.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12656.5349.1 vs. uniprot
Match: D8LE69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE69_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 1.050e-124 Identity = 242/396 (61.11%), Postives = 273/396 (68.94%), Query Frame = 1
Query: 19 RPLFPLEPLVTGVLAASGSASPQP--------LSPYP-QGGMHGGGVDALALDGGTLDVLRRIVGRYSPPRSRLPRGTSPGDGPGLGAGATCAVFRLLCRYGLHVLAAEVTGLNAA--GGEGIETRSADVFMRRRPWISPLERSHCAAQLNLPLTAMVEGIGDDPALVDTSGDPDAMTSALLPAVDSRRLSRIALLLAEQSDRLGLHDDAARLFDLSGHDDRLAAYLN----------GRIQAVSHLDRESPPTDXXXXXXL-AAVKERLRALASAREAAGLTGSVAGKEAGDGGAAAFADLFRRASLLAGVSRLPQARSR--GLQGEALEAAGGGAKWDEIIKDAKPAALVLGXXXXXXXXXXXXXXSSSLRPLALHCAEQWAGRARPECLEVST 1134
RP FPLEPLV GVLAA+ + S SP G GGG LD GTL VLRRIV RY+PPRSRLPRGT+PGDGPGLGAGATC+ FR+L RYGLHVLAAEV G++++ GGE ETRS+DVFMRRRPWISPLERSHCAA L LPLTAM+EGIGDDPALVDTS DPDAMTSA+LPAV SR LSR+AL L EQS RLGLH+ AARLFD+SG D RL+ YLN G + + + T + A ++LRAL +AREA G G GK G+ A A A LFRR SLLAGV R PQA S GL+G+ALEAAGGGAKWD I+++AKPA G SSSLRPLALHCAEQW+GR RPECLEVST
Sbjct: 606 RPFFPLEPLVAGVLAAASAGSSXXXXXXXXXLFSPGSGSDGSDGGGDVERLLDDGTLQVLRRIVARYAPPRSRLPRGTNPGDGPGLGAGATCSAFRVLSRYGLHVLAAEVAGVSSSSSGGEATETRSSDVFMRRRPWISPLERSHCAASLELPLTAMIEGIGDDPALVDTSTDPDAMTSAVLPAVGSR-LSRMALSLGEQSARLGLHEAAARLFDISGEDARLSGYLNXXXXXXTSQSGSLNEAAQAAPDGIETQPEAAAEVEVAAADQLRALTAAREAGG--GRGVGKATGEVSAQA-AGLFRRTSLLAGVVRFPQASSSSGGLKGKALEAAGGGAKWDVIMEEAKPAG---GLSFGGGGRVGEGPPSSSLRPLALHCAEQWSGRVRPECLEVST 994
BLAST of mRNA_M-pyrifera_M_contig12656.5349.1 vs. uniprot
Match: A0A6H5KK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK27_9PHAE) HSP 1 Score: 310 bits (794), Expect = 2.940e-94 Identity = 194/332 (58.43%), Postives = 221/332 (66.57%), Query Frame = 1
Query: 19 RPLFPLEPLVTGVLAASGSAS---PQPLSPYPQG----GMHGGGVDALALDGGTLDVLRR-------IVGRYSPPRSRLPRGTSPGDGPGLGAGATCAVFRLLCRYGLHVLAAEVTGLNAA-GGEGIETRSADVFMRRRPWISPLERSHCAAQLNLPLTAMVEGIGDDPALVDTSGDPDAMTSALLPAVDSR-----------RLSRIALLLAEQSDRLGLHDDAARLFDLSGHDDRLAAYLNGRIQA---VSHLDRESPPTDXXXXXXL--------AAVKERLRALASAREAAGLTGSVAGKEAGDGGAAAFADLFRRASLLAGVSRLPQ 903
RP FPLEPLV GVLAA+ + S P PL+ + G G G G LD TL VLRR IV RY+PPRSRLPRGT+PGDGPGLGAGATC+ FR+L RYGLHVLAAEV G++++ GGE +ETR++DVFMRRRPWISPLERSHCAA L LPLTAM+EGIGDDPALVDT DPDAMTSA+LPAV S RLSR+AL L EQS RLGLH+ AARLFD+SG D RLA++LN + S E+ T AA ++LRAL SAREA G G GK G+ A A A LFRR SLLAGV R PQ
Sbjct: 294 RPFFPLEPLVAGVLAAASAGSSPPPLPLTLFSPGSGTDGSDGAGDAERLLDDSTLHVLRRCRAARVGIVARYAPPRSRLPRGTNPGDGPGLGAGATCSAFRVLSRYGLHVLAAEVAGVSSSSGGEAMETRASDVFMRRRPWISPLERSHCAASLELPLTAMIEGIGDDPALVDTLTDPDAMTSAVLPAVGSSIIRDMCWIGQVRLSRMALSLGEQSARLGLHEAAARLFDISGEDARLASFLNSHVNGHTCPSGSQNEAAQTAPDGVETQPEAAAEVEAAAADQLRALTSAREARG--GRGVGKATGEVSAQA-AGLFRRTSLLAGVVRFPQ 622
BLAST of mRNA_M-pyrifera_M_contig12656.5349.1 vs. uniprot
Match: A0A6H5K7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T4_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.430e-29 Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1
Query: 1447 EQPWVAVGGSWQDEDNVCGYWRFSEGADVGHHLEGEQKVEIRDLSKFGSAAVVKGSGVRFEDTTSPVDPGDKGKVAEAVDVCYP 1698
+QPWV VGGSW+DEDNVCGYWRFSEGA V LE ++VE++DL+K+GS AV +G G+ FE T+SPVDPGDKGKVAEAVDVC+P
Sbjct: 96 QQPWVPVGGSWKDEDNVCGYWRFSEGAAVVGELEDGKQVEMKDLTKYGSTAVARGQGLTFETTSSPVDPGDKGKVAEAVDVCFP 179
BLAST of mRNA_M-pyrifera_M_contig12656.5349.1 vs. uniprot
Match: D8LE70_ECTSI (SRS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE70_ECTSI) HSP 1 Score: 135 bits (339), Expect = 1.940e-29 Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 1
Query: 1447 EQPWVAVGGSWQDEDNVCGYWRFSEGADVGHHLEGEQKVEIRDLSKFGSAAVVKGSGVRFEDTTSPVDPGDKGKVAEAVDVCYP 1698
+QPWV VGGSW+DEDNVCGYWRFSEGA V LE ++VE++DL+K+GSAAV +G G+ F+ T+SPVDPGDKGKVAEAVDVC+P
Sbjct: 80 QQPWVPVGGSWKDEDNVCGYWRFSEGAAVVGGLEDGKQVEMKDLTKYGSAAVARGQGLTFQTTSSPVDPGDKGKVAEAVDVCFP 163 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12656.5349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12656.5349.1 >prot_M-pyrifera_M_contig12656.5349.1 ID=prot_M-pyrifera_M_contig12656.5349.1|Name=mRNA_M-pyrifera_M_contig12656.5349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=566bp MFLRFCRPLFPLEPLVTGVLAASGSASPQPLSPYPQGGMHGGGVDALALDback to top mRNA from alignment at M-pyrifera_M_contig12656:100..7006- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12656.5349.1 ID=mRNA_M-pyrifera_M_contig12656.5349.1|Name=mRNA_M-pyrifera_M_contig12656.5349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6907bp|location=Sequence derived from alignment at M-pyrifera_M_contig12656:100..7006- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12656:100..7006- >mRNA_M-pyrifera_M_contig12656.5349.1 ID=mRNA_M-pyrifera_M_contig12656.5349.1|Name=mRNA_M-pyrifera_M_contig12656.5349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3396bp|location=Sequence derived from alignment at M-pyrifera_M_contig12656:100..7006- (Macrocystis pyrifera P11B4 male)back to top |