mRNA_M-pyrifera_M_contig126504.5348.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126504.5348.1
Unique NamemRNA_M-pyrifera_M_contig126504.5348.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A654ANJ4_9GAMM (Acetylpolyamine amidohydrolase n=46 Tax=root TaxID=1 RepID=A0A654ANJ4_9GAMM)

HSP 1 Score: 207 bits (526), Expect = 3.150e-64
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGK 333
            E+ERG+G GLGYN+NLPMPHGSEESVFFDR+EQACQAIRLFEPDAIVLALGFDIYELD QAKVAVSTAGF ELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLG 
Sbjct:  234 EDERGQGGGLGYNLNLPMPHGSEESVFFDRVEQACQAIRLFEPDAIVLALGFDIYELDLQAKVAVSTAGFAELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGN 344
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A1A0ETG8_9GAMM (Acetylpolyamine aminohydrolase n=3 Tax=Halomonas TaxID=2745 RepID=A0A1A0ETG8_9GAMM)

HSP 1 Score: 202 bits (515), Expect = 1.250e-62
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGK 333
            E+ERG+GAGLGYNINLPMPHGS ESVFFDRLEQACQAIRLFEPDAIVLALGFDI E DPQAKVAVSTAGFGELGR VAGLN+PTLVVQEGGYYLEGLEANA SFFEGLLG 
Sbjct:  229 EDERGQGAGLGYNINLPMPHGSGESVFFDRLEQACQAIRLFEPDAIVLALGFDIDERDPQAKVAVSTAGFGELGRTVAGLNLPTLVVQEGGYYLEGLEANATSFFEGLLGN 339
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A1H9WRD6_9GAMM (Acetoin utilization deacetylase AcuC n=3 Tax=Halomonas TaxID=2745 RepID=A0A1H9WRD6_9GAMM)

HSP 1 Score: 201 bits (511), Expect = 4.750e-62
Identity = 99/109 (90.83%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    7 ERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGK 333
            ERG+GAGLGYNINLPMPHGS+E+VFF+RLEQACQAIRLFEPDA+VLALGFDIYE DPQAKVAVSTAGFG+LGR VAGLN+PTLVVQEGGYYLEGLEANAVSFFEGLLG 
Sbjct:  231 ERGQGAGLGYNINLPMPHGSQEAVFFERLEQACQAIRLFEPDAMVLALGFDIYERDPQAKVAVSTAGFGQLGRIVAGLNLPTLVVQEGGYYLEGLEANAVSFFEGLLGN 339
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A2M9TA97_9GAMM (Acetylpolyamine amidohydrolase n=10 Tax=Halomonadaceae TaxID=28256 RepID=A0A2M9TA97_9GAMM)

HSP 1 Score: 200 bits (509), Expect = 1.120e-61
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLG 330
            EEERGEGAGLGYN+NLPMPHGS E+VFFDRL QACQAIRLFEPDA+VLALGFDI+E DPQAKVAVST GFGELGR +AGL+VPTLVVQEGGYYLEGLEANAVSFFEGLLG
Sbjct:  229 EEERGEGAGLGYNLNLPMPHGSAEAVFFDRLAQACQAIRLFEPDALVLALGFDIHERDPQAKVAVSTPGFGELGRTIAGLDVPTLVVQEGGYYLEGLEANAVSFFEGLLG 338
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A3S0YCU6_9GAMM (Histone deacetylase family protein n=6 Tax=Halomonas TaxID=2745 RepID=A0A3S0YCU6_9GAMM)

HSP 1 Score: 199 bits (506), Expect = 3.090e-61
Identity = 97/111 (87.39%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGK 333
            E ERGEGAGLGYN+NLPMPHGS+ESVFF+RL++ACQAI+LFEPDAIVLALGFDIYE DPQAKVAVST GF ELGRRVAGLN+PTLVVQEGGYYLEGLEANA+SFF+GLLG+
Sbjct:  229 ENERGEGAGLGYNLNLPMPHGSKESVFFERLDEACQAIQLFEPDAIVLALGFDIYERDPQAKVAVSTPGFAELGRRVAGLNLPTLVVQEGGYYLEGLEANAMSFFKGLLGE 339
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A354XGW9_HALSX (Histone deacetylase family protein n=5 Tax=Halomonas TaxID=2745 RepID=A0A354XGW9_HALSX)

HSP 1 Score: 199 bits (505), Expect = 3.820e-61
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLL 327
            EEERGEGAGLGYN+NLPMPHGS+E+VFF+RL  ACQAIRLFEPDA+VLALGFDIYE DPQAKVAVSTAGF ELGRRVA LNVPTLVVQEGGYYLEGLEANAVSFFEGLL
Sbjct:  229 EEERGEGAGLGYNLNLPMPHGSKEAVFFERLADACQAIRLFEPDALVLALGFDIYERDPQAKVAVSTAGFAELGRRVAELNVPTLVVQEGGYYLEGLEANAVSFFEGLL 337
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A1Q8THW5_9GAMM (Acetylpolyamine amidohydrolase n=5 Tax=Chromohalobacter TaxID=42054 RepID=A0A1Q8THW5_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 7.840e-55
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGL 324
            E+ERG GAG GYN+NLPMPHGS E+VFF+RL++ACQAIRLFEPDA+VLALGFDI+E DPQA+VAVST GFG+LGR VA L++PTLVVQEGGYYLEGLEANAVSFFEGL
Sbjct:  229 EDERGHGAGEGYNLNLPMPHGSPEAVFFERLDEACQAIRLFEPDAVVLALGFDIHERDPQAQVAVSTPGFGKLGRVVADLDLPTLVVQEGGYYLEGLEANAVSFFEGL 336
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BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: UPI00058D5234 (histone deacetylase family protein n=3 Tax=Halomonadaceae TaxID=28256 RepID=UPI00058D5234)

HSP 1 Score: 179 bits (455), Expect = 1.250e-53
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGL 324
            E+ERG GAG GYN+NL MPHGS E+VFF+RL++ACQA+RLFEPDA+VLALGFDI+E DPQAKVAVST GFG+LGR VA L++PTLVVQEGGYYLEGLEANAVSFFEGL
Sbjct:  229 EDERGHGAGEGYNLNLAMPHGSPEAVFFERLDEACQALRLFEPDALVLALGFDIHERDPQAKVAVSTPGFGKLGRVVAELDLPTLVVQEGGYYLEGLEANAVSFFEGL 336
[Close]
BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: UPI000DA1B7AE (histone deacetylase family protein n=1 Tax=Salinicola peritrichatus TaxID=1267424 RepID=UPI000DA1B7AE)

HSP 1 Score: 164 bits (414), Expect = 1.780e-47
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLLGK 333
            E+ERG             PHGS+ESVFF+RLEQACQAIRLFEPDA+VLALGFDI+E DPQAKVAVST GF  LG  VAGLN+PTLVVQEGGYYLEGLE NAVSFFEGLLG+
Sbjct:  229 EDERGXXXXXXXXXXXXXPHGSKESVFFERLEQACQAIRLFEPDALVLALGFDIHEKDPQAKVAVSTPGFARLGDTVAGLNLPTLVVQEGGYYLEGLEDNAVSFFEGLLGR 339
[Close]
BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Match: A0A1S2DEZ0_9GAMM (Acetylpolyamine aminohydrolase n=10 Tax=Salinicola TaxID=404432 RepID=A0A1S2DEZ0_9GAMM)

HSP 1 Score: 163 bits (412), Expect = 3.900e-47
Identity = 80/109 (73.39%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:    1 EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLALGFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEANAVSFFEGLL 327
            E ERG           PMPHGS E+VF DRLE+ACQAIRLFEPDA+VLALGFDI+E DPQA+V+VST GFG+LGR ++GL +PTL+VQEGGYYLEGLEANAVSFFEGLL
Sbjct:  233 ENERGXXXXXXXXXXXPMPHGSPEAVFVDRLEEACQAIRLFEPDALVLALGFDIHEKDPQARVSVSTPGFGQLGREISGLGLPTLIVQEGGYYLEGLEANAVSFFEGLL 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126504.5348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A654ANJ4_9GAMM3.150e-6492.79Acetylpolyamine amidohydrolase n=46 Tax=root TaxID... [more]
A0A1A0ETG8_9GAMM1.250e-6291.89Acetylpolyamine aminohydrolase n=3 Tax=Halomonas T... [more]
A0A1H9WRD6_9GAMM4.750e-6290.83Acetoin utilization deacetylase AcuC n=3 Tax=Halom... [more]
A0A2M9TA97_9GAMM1.120e-6190.00Acetylpolyamine amidohydrolase n=10 Tax=Halomonada... [more]
A0A3S0YCU6_9GAMM3.090e-6187.39Histone deacetylase family protein n=6 Tax=Halomon... [more]
A0A354XGW9_HALSX3.820e-6190.83Histone deacetylase family protein n=5 Tax=Halomon... [more]
A0A1Q8THW5_9GAMM7.840e-5582.41Acetylpolyamine amidohydrolase n=5 Tax=Chromohalob... [more]
UPI00058D52341.250e-5381.48histone deacetylase family protein n=3 Tax=Halomon... [more]
UPI000DA1B7AE1.780e-4775.68histone deacetylase family protein n=1 Tax=Salinic... [more]
A0A1S2DEZ0_9GAMM3.900e-4773.39Acetylpolyamine aminohydrolase n=10 Tax=Salinicola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126504contigM-pyrifera_M_contig126504:3..341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score217.2
Seed ortholog evalue3.8e-54
Seed eggNOG ortholog1504981.KO116_0313
Preferred nameaphA2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein
EggNOG OGs1MU7P@1224,1S070@1236,COG0123@1,COG0123@2
COG Functional cat.BQ
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.7198236-CDS-M-pyrifera_M_contig126504:2..3411622815779.7198236-CDS-M-pyrifera_M_contig126504:2..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126504 3..341 +
1692277565.6893284-CDS-M-pyrifera_M_contig126504:2..3411692277565.6893284-CDS-M-pyrifera_M_contig126504:2..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126504 3..341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126504.5348.1prot_M-pyrifera_M_contig126504.5348.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126504 3..341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126504.5348.1

>prot_M-pyrifera_M_contig126504.5348.1 ID=prot_M-pyrifera_M_contig126504.5348.1|Name=mRNA_M-pyrifera_M_contig126504.5348.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
EEERGEGAGLGYNINLPMPHGSEESVFFDRLEQACQAIRLFEPDAIVLAL
GFDIYELDPQAKVAVSTAGFGELGRRVAGLNVPTLVVQEGGYYLEGLEAN
AVSFFEGLLGKA*
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mRNA from alignment at M-pyrifera_M_contig126504:3..341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126504.5348.1 ID=mRNA_M-pyrifera_M_contig126504.5348.1|Name=mRNA_M-pyrifera_M_contig126504.5348.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig126504:3..341+ (Macrocystis pyrifera P11B4 male)
GAAGAGGAGCGCGGAGAGGGCGCCGGGCTGGGCTATAACATCAACCTACC
GATGCCCCATGGCTCAGAAGAGTCAGTGTTTTTTGACCGCCTGGAGCAAG
CCTGCCAAGCCATTCGGCTGTTCGAGCCGGACGCCATTGTGCTGGCGCTG
GGGTTTGATATTTACGAACTCGACCCACAAGCCAAGGTCGCCGTTTCAAC
CGCGGGGTTTGGTGAGCTTGGCCGCAGGGTGGCGGGTTTGAATGTGCCTA
CGCTAGTGGTACAGGAAGGCGGTTACTACCTGGAAGGGTTGGAAGCTAAT
GCAGTGAGTTTTTTTGAGGGGTTGTTGGGCAAGGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126504:3..341+

>mRNA_M-pyrifera_M_contig126504.5348.1 ID=mRNA_M-pyrifera_M_contig126504.5348.1|Name=mRNA_M-pyrifera_M_contig126504.5348.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig126504:3..341+ (Macrocystis pyrifera P11B4 male)
GAAGAGGAGCGCGGAGAGGGCGCCGGGCTGGGCTATAACATCAACCTACC
GATGCCCCATGGCTCAGAAGAGTCAGTGTTTTTTGACCGCCTGGAGCAAG
CCTGCCAAGCCATTCGGCTGTTCGAGCCGGACGCCATTGTGCTGGCGCTG
GGGTTTGATATTTACGAACTCGACCCACAAGCCAAGGTCGCCGTTTCAAC
CGCGGGGTTTGGTGAGCTTGGCCGCAGGGTGGCGGGTTTGAATGTGCCTA
CGCTAGTGGTACAGGAAGGCGGTTACTACCTGGAAGGGTTGGAAGCTAAT
GCAGTGAGTTTTTTTGAGGGGTTGTTGGGCAAGGCGTAAGAAGAGGAGCG
CGGAGAGGGCGCCGGGCTGGGCTATAACATCAACCTACCGATGCCCCATG
GCTCAGAAGAGTCAGTGTTTTTTGACCGCCTGGAGCAAGCCTGCCAAGCC
ATTCGGCTGTTCGAGCCGGACGCCATTGTGCTGGCGCTGGGGTTTGATAT
TTACGAACTCGACCCACAAGCCAAGGTCGCCGTTTCAACCGCGGGGTTTG
GTGAGCTTGGCCGCAGGGTGGCGGGTTTGAATGTGCCTACGCTAGTGGTA
CAGGAAGGCGGTTACTACCTGGAAGGGTTGGAAGCTAATGCAGTGAGTTT
TTTTGAGGGGTTGTTGGGCAAGGCGTAA
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