mRNA_M-pyrifera_M_contig1265.5346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1265.5346.1
Unique NamemRNA_M-pyrifera_M_contig1265.5346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1265.5346.1 vs. uniprot
Match: D7G2I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.390e-21
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  571 KAKRPPTFRERAVRTWWRGLSCGVCFAAGAWTRDGHGLVGLALALAAVCGELVFHE 738
            K+ R P+ RERA+RTWWRGLSCG+CFAAGAW R+GHG  G  LALAAVCGE+VFHE
Sbjct:  250 KSVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHE 305
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BLAST of mRNA_M-pyrifera_M_contig1265.5346.1 vs. uniprot
Match: A0A6H5L086_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L086_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.950e-21
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:  571 KAKRPPTFRERAVRTWWRGLSCGVCFAAGAWTRDGHGLVGLALALAAVCGELVFHE 738
            K  R P+ RERA+RTWWRGLSCG+CFAAGAW R+GHG  G  LALAAVCGE+VFHE
Sbjct:  256 KRVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHE 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1265.5346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I5_ECTSI1.390e-2175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L086_9PHAE2.950e-2175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1265contigM-pyrifera_M_contig1265:17425..18171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001650.1
Exons1
Model size747
Cds size747
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.5175474-CDS-M-pyrifera_M_contig1265:17424..181711622815779.5175474-CDS-M-pyrifera_M_contig1265:17424..18171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1265 17425..18171 +
1692277565.5572066-CDS-M-pyrifera_M_contig1265:17424..181711692277565.5572066-CDS-M-pyrifera_M_contig1265:17424..18171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1265 17425..18171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1265.5346.1prot_M-pyrifera_M_contig1265.5346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1265 17425..18171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1265.5346.1

>prot_M-pyrifera_M_contig1265.5346.1 ID=prot_M-pyrifera_M_contig1265.5346.1|Name=mRNA_M-pyrifera_M_contig1265.5346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
DQHLDRLGSILRSLRAPPERALGSSLKPGRAHQPRQQHQHQKHQHQKHQK
HQKQLQQQQQQTVDGFLHHSGPSPRSLTKPKRSQTEALESRRTQSAKTDR
RYEYSHHRDRARSGRPATSALPPPTSEEDNPAIRSMSHAREQKRSPSPQR
HTPPPTAAAPSLSTEAVSTAPSSTVAAAAAAGAVLCTVNGKAKRPPTFRE
RAVRTWWRGLSCGVCFAAGAWTRDGHGLVGLALALAAVCGELVFHEWS*
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mRNA from alignment at M-pyrifera_M_contig1265:17425..18171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1265.5346.1 ID=mRNA_M-pyrifera_M_contig1265.5346.1|Name=mRNA_M-pyrifera_M_contig1265.5346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig1265:17425..18171+ (Macrocystis pyrifera P11B4 male)
GATCAGCATCTGGACAGGCTCGGAAGCATCCTGCGCAGCCTCAGAGCGCC
GCCCGAGCGAGCGCTGGGTTCATCACTCAAGCCGGGCCGCGCACACCAGC
CGCGCCAGCAGCACCAGCACCAGAAACACCAGCACCAGAAGCACCAGAAG
CACCAGAAGCAGCTGCAGCAGCAGCAGCAGCAGACGGTCGACGGGTTCCT
CCATCATTCTGGACCATCGCCGCGGTCTCTCACGAAACCGAAACGTTCGC
AAACCGAAGCCCTCGAAAGTCGACGCACACAATCGGCGAAGACGGACCGA
CGCTATGAATACAGTCACCATCGCGATCGCGCGAGAAGCGGCAGGCCTGC
AACTTCCGCGCTCCCTCCCCCCACGTCGGAAGAGGACAACCCGGCTATAA
GGAGCATGAGCCACGCGAGAGAGCAGAAACGTTCGCCCTCCCCGCAGCGC
CACACTCCCCCCCCCACCGCTGCCGCCCCGAGTCTGAGCACGGAGGCTGT
TTCGACCGCTCCCAGCAGCACTGTAGCAGCAGCAGCAGCAGCGGGAGCTG
TTTTATGCACGGTCAATGGCAAGGCAAAGCGGCCGCCAACTTTTAGAGAG
CGCGCGGTTCGGACGTGGTGGAGAGGTTTGTCGTGCGGCGTTTGTTTCGC
GGCCGGCGCGTGGACGCGCGACGGACACGGGCTGGTCGGGCTGGCGCTGG
CCCTGGCCGCTGTCTGTGGCGAGCTTGTGTTCCATGAGTGGAGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1265:17425..18171+

>mRNA_M-pyrifera_M_contig1265.5346.1 ID=mRNA_M-pyrifera_M_contig1265.5346.1|Name=mRNA_M-pyrifera_M_contig1265.5346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig1265:17425..18171+ (Macrocystis pyrifera P11B4 male)
GATCAGCATCTGGACAGGCTCGGAAGCATCCTGCGCAGCCTCAGAGCGCC
GCCCGAGCGAGCGCTGGGTTCATCACTCAAGCCGGGCCGCGCACACCAGC
CGCGCCAGCAGCACCAGCACCAGAAACACCAGCACCAGAAGCACCAGAAG
CACCAGAAGCAGCTGCAGCAGCAGCAGCAGCAGACGGTCGACGGGTTCCT
CCATCATTCTGGACCATCGCCGCGGTCTCTCACGAAACCGAAACGTTCGC
AAACCGAAGCCCTCGAAAGTCGACGCACACAATCGGCGAAGACGGACCGA
CGCTATGAATACAGTCACCATCGCGATCGCGCGAGAAGCGGCAGGCCTGC
AACTTCCGCGCTCCCTCCCCCCACGTCGGAAGAGGACAACCCGGCTATAA
GGAGCATGAGCCACGCGAGAGAGCAGAAACGTTCGCCCTCCCCGCAGCGC
CACACTCCCCCCCCCACCGCTGCCGCCCCGAGTCTGAGCACGGAGGCTGT
TTCGACCGCTCCCAGCAGCACTGTAGCAGCAGCAGCAGCAGCGGGAGCTG
TTTTATGCACGGTCAATGGCAAGGCAAAGCGGCCGCCAACTTTTAGAGAG
CGCGCGGTTCGGACGTGGTGGAGAGGTTTGTCGTGCGGCGTTTGTTTCGC
GGCCGGCGCGTGGACGCGCGACGGACACGGGCTGGTCGGGCTGGCGCTGG
CCCTGGCCGCTGTCTGTGGCGAGCTTGTGTTCCATGAGTGGAGCTAGGAT
CAGCATCTGGACAGGCTCGGAAGCATCCTGCGCAGCCTCAGAGCGCCGCC
CGAGCGAGCGCTGGGTTCATCACTCAAGCCGGGCCGCGCACACCAGCCGC
GCCAGCAGCACCAGCACCAGAAACACCAGCACCAGAAGCACCAGAAGCAC
CAGAAGCAGCTGCAGCAGCAGCAGCAGCAGACGGTCGACGGGTTCCTCCA
TCATTCTGGACCATCGCCGCGGTCTCTCACGAAACCGAAACGTTCGCAAA
CCGAAGCCCTCGAAAGTCGACGCACACAATCGGCGAAGACGGACCGACGC
TATGAATACAGTCACCATCGCGATCGCGCGAGAAGCGGCAGGCCTGCAAC
TTCCGCGCTCCCTCCCCCCACGTCGGAAGAGGACAACCCGGCTATAAGGA
GCATGAGCCACGCGAGAGAGCAGAAACGTTCGCCCTCCCCGCAGCGCCAC
ACTCCCCCCCCCACCGCTGCCGCCCCGAGTCTGAGCACGGAGGCTGTTTC
GACCGCTCCCAGCAGCACTGTAGCAGCAGCAGCAGCAGCGGGAGCTGTTT
TATGCACGGTCAATGGCAAGGCAAAGCGGCCGCCAACTTTTAGAGAGCGC
GCGGTTCGGACGTGGTGGAGAGGTTTGTCGTGCGGCGTTTGTTTCGCGGC
CGGCGCGTGGACGCGCGACGGACACGGGCTGGTCGGGCTGGCGCTGGCCC
TGGCCGCTGTCTGTGGCGAGCTTGTGTTCCATGAGTGGAGCTAG
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