mRNA_M-pyrifera_M_contig126478.5339.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126478.5339.1
Unique NamemRNA_M-pyrifera_M_contig126478.5339.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517PZL8_9PLAN (ECF RNA polymerase sigma factor SigL n=17 Tax=Planctomycetaceae TaxID=126 RepID=A0A517PZL8_9PLAN)

HSP 1 Score: 293 bits (749), Expect = 1.650e-99
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
            TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEE+VEENDQA VIR+ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV
Sbjct:   35 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEVVEENDQALVIRRALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 189          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A518I4V0_9PLAN (ECF RNA polymerase sigma factor SigL n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518I4V0_9PLAN)

HSP 1 Score: 278 bits (710), Expect = 6.810e-94
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
            T+ RL+RYAVTVT+N+PDAEDAIQATMVR+AM+PKILATAQQPWAYLLRV RNEALRILQKRKPLQIFAQCRQLWSRD E+VEENDQAQVIR ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMA EDI++
Sbjct:   11 TATRLVRYAVTVTKNSPDAEDAIQATMVRMAMKPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFAQCRQLWSRDSEVVEENDQAQVIRNALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAHEDIDI 165          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517R832_9PLAN (ECF RNA polymerase sigma factor SigL n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R832_9PLAN)

HSP 1 Score: 279 bits (714), Expect = 3.220e-93
Identity = 142/155 (91.61%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
            T+ RL+RYAVTVT+NTPDAEDAIQATMVR+AM+PKILATAQQPWAYLLRV RNEALRILQKRKPLQIFAQCRQLWSRD E+VEENDQAQVIR ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMA EDI++
Sbjct:   98 TATRLVRYAVTVTKNTPDAEDAIQATMVRMAMKPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFAQCRQLWSRDSEVVEENDQAQVIRNALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAHEDIDI 252          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517X3N0_9PLAN (ECF RNA polymerase sigma factor SigL n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3N0_9PLAN)

HSP 1 Score: 271 bits (694), Expect = 4.100e-91
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
            T+ RL+RYAVTVT+NT DAEDAIQATMVRIAMRPKILATAQQPWAYLLRV RNEALRILQKRKPLQIF+QC+QLWSRD   VEEND+AQVIR+ALKRLPTNQSEVVVLKIWEDMTFAEIA+VLDESPNTVASRYRYALQKLDNYLRP  REDINV
Sbjct:   36 TAHRLIRYAVTVTKNTADAEDAIQATMVRIAMRPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFSQCKQLWSRDSATVEENDEAQVIRRALKRLPTNQSEVVVLKIWEDMTFAEIANVLDESPNTVASRYRYALQKLDNYLRPTTREDINV 190          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517ZGU2_9PLAN (ECF RNA polymerase sigma factor SigL n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZGU2_9PLAN)

HSP 1 Score: 155 bits (391), Expect = 4.590e-45
Identity = 84/151 (55.63%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
            T+ RLLRYA T+TRN  DAEDA+QA MVR+ +RPK LA A  PW Y L+V RNEAL+IL+K++     A    +   +   +++ +    IR A++ LP  Q EVVVLKIWE MTF EIA VL ESPNT ASRYRYAL+KL + L+PMA E
Sbjct:   35 TASRLLRYAETLTRNREDAEDALQAAMVRMTLRPKALAGADHPWPYFLKVVRNEALKILRKKRAACSLATVAPIGVTESCQLDQQEANAQIRAAIRELPPAQGEVVVLKIWEGMTFLEIAEVLGESPNTAASRYRYALEKLTHILQPMANE 185          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A5C6DDK0_9BACT (ECF RNA polymerase sigma factor SigL n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DDK0_9BACT)

HSP 1 Score: 154 bits (389), Expect = 8.950e-45
Identity = 81/155 (52.26%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSR-DEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDIN 462
            T++RL+RYA T+T N  DAEDA+ A +VR+A  P++L  A++PWAYLLR+ RNE+L IL+K+K   +      L +R   + +E  DQ + +  AL+ LPT QSEVVVLKIWEDMTFA+I+ VL+ SP+T ASRYRYA++KL   LR    E I+
Sbjct:   33 TAQRLVRYATTITANQHDAEDAVSAALVRVAREPRLLCRAERPWAYLLRMVRNESLLILRKKKRWSLLGDLSDLLTRRSSDPIEIEDQQRAVWSALRSLPTEQSEVVVLKIWEDMTFAQISEVLEVSPSTAASRYRYAIEKLSGKLRSSDAEVIH 187          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A3N5S6B1_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5S6B1_9PLAN)

HSP 1 Score: 152 bits (384), Expect = 3.460e-44
Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
            T+ R LR+A T+TRN  DAEDA+QA MVR+A+ P  LA A  PWAYLLR+ RNEAL+I  KR+  Q+     +    DE  ++  D  + +++A+++LP  QSEVVVLK+WE +TFAEIA VL ESPNT ASRYRYALQKL   L+P+  E
Sbjct:   23 TASRSLRFAATLTRNQHDAEDAVQAAMVRVALHPGKLARADHPWAYLLRIVRNEALKINLKRRNDQVLTLMNE--QGDEPALDLADARRFVQKAVEQLPAAQSEVVVLKVWEGLTFAEIAEVLGESPNTAASRYRYALQKLTLTLQPLVEE 171          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: UPI001421D957 (RNA polymerase sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001421D957)

HSP 1 Score: 150 bits (379), Expect = 2.590e-43
Identity = 84/154 (54.55%), Postives = 108/154 (70.13%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQV---IRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
            T+ RL+RYA  +TR+  DAED  QA  VR+A RP  L  A  PWAYLLR+ RNEA R+L +RKP+ + +    +     E+  E DQ ++   I+ AL++LP  QSEVVVLK+WE+MTFAEIA+V+DESPNT+ASRYRYALQKL   L  +A E
Sbjct:   30 TASRLVRYAYALTRHRDDAEDVFQAAFVRVARRPHGLVRADYPWAYLLRIVRNEAFRLLSRRKPVPLPSI---VLESHVEVGIELDQEELRRHIQVALEKLPITQSEVVVLKVWEEMTFAEIAAVMDESPNTIASRYRYALQKLQPMLESLANE 180          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A7C4QPF3_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QPF3_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.280e-42
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
            T+ RLLRYA T+TR+  DAEDA+QA +VRIA  P+ LA AQ+PWAYLL+V RNE LR++ +R+P     + +      E  +   +Q   ++ AL+RLP  Q+EVVV KIWE++TF EIA++  ESPNTVASRYRYAL KL   LR +A E
Sbjct:   24 TAPRLLRYAQTLTRSRDDAEDAVQAAIVRIAQHPQSLAAAQRPWAYLLKVVRNETLRLMARRQPGLALTEDQAARHPAESPLCLREQQAEVQAALRRLPVEQAEVVVFKIWEELTFQEIAAITGESPNTVASRYRYALAKLGTSLRRLAVE 174          
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A7D8YAZ6_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8YAZ6_9PLAN)

HSP 1 Score: 146 bits (368), Expect = 1.660e-41
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQ-KRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPM 444
            T+ RL+RY+VT+TRN  DAEDA+QAT+VR+A  P+ L  A+QPWAYLLR+ RNE+L IL+ KR+   + +    L  R  + VE  +  + I  AL+ LPT QSEVVVLKIWE MTFA+IA VLD +P T ASRYRYAL KL   L P+
Sbjct:   33 TAVRLVRYSVTITRNQHDAEDAVQATLVRVADSPRTLDRAEQPWAYLLRMVRNESLVILRRKRRWTSLLSLSDLLTRRGVDEVEHEETYREIWTALRTLPTEQSEVVVLKIWEAMTFAQIADVLDVAPATAASRYRYALDKLARKLGPL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PZL8_9PLAN1.650e-9998.06ECF RNA polymerase sigma factor SigL n=17 Tax=Plan... [more]
A0A518I4V0_9PLAN6.810e-9490.97ECF RNA polymerase sigma factor SigL n=3 Tax=Gimes... [more]
A0A517R832_9PLAN3.220e-9391.61ECF RNA polymerase sigma factor SigL n=1 Tax=Gimes... [more]
A0A517X3N0_9PLAN4.100e-9189.68ECF RNA polymerase sigma factor SigL n=2 Tax=Gimes... [more]
A0A517ZGU2_9PLAN4.590e-4555.63ECF RNA polymerase sigma factor SigL n=2 Tax=Symma... [more]
A0A5C6DDK0_9BACT8.950e-4552.26ECF RNA polymerase sigma factor SigL n=1 Tax=Novip... [more]
A0A3N5S6B1_9PLAN3.460e-4454.97Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
UPI001421D9572.590e-4354.55RNA polymerase sigma factor n=1 Tax=Rubinisphaera ... [more]
A0A7C4QPF3_9PLAN1.280e-4253.64Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7D8YAZ6_9PLAN1.660e-4156.38Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126478contigM-pyrifera_M_contig126478:3..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score280.0
Seed ortholog evalue6.6e-73
Seed eggNOG ortholog344747.PM8797T_08899
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the sigma-70 factor family. ECF subfamily
EggNOG OGs2J3M4@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.274157-CDS-M-pyrifera_M_contig126478:2..4701622815779.274157-CDS-M-pyrifera_M_contig126478:2..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126478 3..470 +
1692277565.465138-CDS-M-pyrifera_M_contig126478:2..4701692277565.465138-CDS-M-pyrifera_M_contig126478:2..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126478 3..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126478.5339.1prot_M-pyrifera_M_contig126478.5339.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126478 3..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126478.5339.1

>prot_M-pyrifera_M_contig126478.5339.1 ID=prot_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRV
ARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPT
NQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAR
EDINV*
back to top

mRNA from alignment at M-pyrifera_M_contig126478:3..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126478.5339.1 ID=mRNA_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig126478:3..470+ (Macrocystis pyrifera P11B4 male)
ACATCGGAGCGATTGCTGCGCTATGCGGTGACAGTGACCCGCAACACTCC CGATGCGGAGGATGCGATTCAGGCGACCATGGTGCGGATTGCCATGCGAC CCAAAATTCTGGCGACCGCTCAGCAGCCGTGGGCCTACCTGTTACGGGTG GCCCGGAACGAAGCGCTGCGGATTCTGCAGAAGCGGAAGCCGCTGCAGAT CTTCGCCCAGTGCAGACAGCTCTGGTCGCGAGATGAAGAAATCGTGGAAG AGAATGATCAGGCCCAGGTGATTCGGCAGGCATTAAAGCGGCTGCCGACG AACCAGTCTGAAGTGGTGGTGCTGAAGATCTGGGAGGATATGACGTTTGC GGAAATTGCCAGTGTACTGGATGAATCGCCGAACACCGTGGCCAGTCGTT ACCGTTATGCACTCCAGAAATTAGATAATTACCTGCGTCCCATGGCGCGT GAGGATATCAATGTTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126478:3..470+

>mRNA_M-pyrifera_M_contig126478.5339.1 ID=mRNA_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig126478:3..470+ (Macrocystis pyrifera P11B4 male)
ACATCGGAGCGATTGCTGCGCTATGCGGTGACAGTGACCCGCAACACTCC
CGATGCGGAGGATGCGATTCAGGCGACCATGGTGCGGATTGCCATGCGAC
CCAAAATTCTGGCGACCGCTCAGCAGCCGTGGGCCTACCTGTTACGGGTG
GCCCGGAACGAAGCGCTGCGGATTCTGCAGAAGCGGAAGCCGCTGCAGAT
CTTCGCCCAGTGCAGACAGCTCTGGTCGCGAGATGAAGAAATCGTGGAAG
AGAATGATCAGGCCCAGGTGATTCGGCAGGCATTAAAGCGGCTGCCGACG
AACCAGTCTGAAGTGGTGGTGCTGAAGATCTGGGAGGATATGACGTTTGC
GGAAATTGCCAGTGTACTGGATGAATCGCCGAACACCGTGGCCAGTCGTT
ACCGTTATGCACTCCAGAAATTAGATAATTACCTGCGTCCCATGGCGCGT
GAGGATATCAATGTTTGAACATCGGAGCGATTGCTGCGCTATGCGGTGAC
AGTGACCCGCAACACTCCCGATGCGGAGGATGCGATTCAGGCGACCATGG
TGCGGATTGCCATGCGACCCAAAATTCTGGCGACCGCTCAGCAGCCGTGG
GCCTACCTGTTACGGGTGGCCCGGAACGAAGCGCTGCGGATTCTGCAGAA
GCGGAAGCCGCTGCAGATCTTCGCCCAGTGCAGACAGCTCTGGTCGCGAG
ATGAAGAAATCGTGGAAGAGAATGATCAGGCCCAGGTGATTCGGCAGGCA
TTAAAGCGGCTGCCGACGAACCAGTCTGAAGTGGTGGTGCTGAAGATCTG
GGAGGATATGACGTTTGCGGAAATTGCCAGTGTACTGGATGAATCGCCGA
ACACCGTGGCCAGTCGTTACCGTTATGCACTCCAGAAATTAGATAATTAC
CTGCGTCCCATGGCGCGTGAGGATATCAATGTTTGA
back to top