mRNA_M-pyrifera_M_contig126460.5332.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126460.5332.1
Unique NamemRNA_M-pyrifera_M_contig126460.5332.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A2D9CJ92_9BACT (RCK N-terminal domain-containing protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CJ92_9BACT)

HSP 1 Score: 146 bits (368), Expect = 3.250e-42
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 MLAPTASSRTHRMLGLGASPAAALDMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVHFFS 387
            MLAP  S+  HR++GLGA      +     D  + +VIIGFGPAG AIG AA KLP+RVDVVDM+P  +R+AR +G   H ADASHADVLEHLGI+H  IA+VTIPDPLAA A+IKQIR  AP  H  +
Sbjct:    1 MLAPRLSASIHRIIGLGAFSVDHDEADTEGDTRKHVVIIGFGPAGRAIGQAAGKLPLRVDVVDMNPGIVRSARDLGLLGHVADASHADVLEHLGINHAHIAIVTIPDPLAARAIIKQIRVCAPDTHIIA 129          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A7Y2I0J0_9BACT (Sodium:proton exchanger n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y2I0J0_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 2.530e-21
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   55 SPAAALDMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVHFFS 387
            +PA+     +     + LVIIGFGPAG A+G    +L  RV V+D++P  IR A+ +    H  DA HADVLEH GI     AVVTIPDP AA A+++ IR+ AP VH  +
Sbjct:  392 APASMQGAADVCPPKRPLVIIGFGPAGQAVGQTLERLADRVTVIDLNPNMIRKAQQLELSGHIGDAMHADVLEHAGITSAAAAVVTIPDPTAARAIVELIRSIAPEVHIIA 502          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A2A5DF07_9BACT (Sodium:proton exchanger n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5DF07_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 4.080e-17
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   97 PQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVHFFS 387
            P   VIIGFGPAG A+G     +  RV VVD++P  I   + +G   H  DA   DVLEH GI      VVT+PDP+AA A++  IR+ AP +H  +
Sbjct:  411 PPEFVIIGFGPAGEAVGQTLQGISNRVAVVDLNPGLIDEVQQLGLVGHIGDAMQTDVLEHAGILSASAVVVTVPDPVAAQAIVALIRSMAPEIHIIA 507          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A2S8K7Z6_9DELT (Sodium:proton exchanger n=1 Tax=Desulfobacteraceae bacterium SEEP-SAG9 TaxID=2100161 RepID=A0A2S8K7Z6_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 1.160e-12
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   34 RMLGLGASPAAALDMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAV 375
            R L  G+ P+        ++   R++++G GPAG  +    +   +   ++D++P +   A   G H H  DASH ++L H G+  V +AVVTIPDP AA+ +++ IR   P V
Sbjct:  390 RSLAAGSFPSG------EAEPANRVLVVGLGPAGRQVVQTLVAKHLEPVLIDVNPKSREYAHQQGLHLHLGDASHEEILMHAGLAGVCMAVVTIPDPHAAVRIVEMIRRLRPHV 497          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A497E8E6_9BACT (Sodium:proton exchanger n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A497E8E6_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.930e-12
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   28 THRMLGLGAS---PAAALDMGES---SDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAV 375
            T  ++ LGA     AA +  GE+   +    RLV++GFGPAG A    A +      V++++P  I  AR  GF  H  DA+H +VL H G+       VT+PD  AA  +I+ +R  AP V
Sbjct:  381 TPLLIALGARISLRAAGVVSGETRQGASIANRLVVVGFGPAGAAAATEAQRSGRETVVIELNPRLIAQARKEGFEVHLGDATHPEVLRHAGVGEAAAVAVTVPDHHAAARIIQLVRFLAPGV 502          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: UPI0019938D3E (NAD-binding protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019938D3E)

HSP 1 Score: 69.7 bits (169), Expect = 9.650e-12
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    4 LAPTASSRTHRMLGLGASPAAALDMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVH 378
            LAP A +   R     A PAA     ES      ++IIGFGPAG AIG A +    +V V+D++P     A ++G      D +  +VLEH  +    + V+T+P   AA+ V++ ++  AP  H
Sbjct:   77 LAPAAGNWLERRRKTPAQPAA---QSESEHLHPDVLIIGFGPAGQAIGRALVGKQHKVIVLDVNPQGKLLAESLGLVGQIGDGTQFEVLEHAHVSSAKLVVITLPARSAALTVLQTVKQLAPQAH 198          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A496ZJK0_9DELT (Sodium:proton exchanger n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A496ZJK0_9DELT)

HSP 1 Score: 66.6 bits (161), Expect = 3.060e-10
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   16 ASSRTHRMLGLGA--SPAAALDMGESSDHP---QRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAP 369
            A + T R+L L +   P AA D+  SS  P    +++++G GPAG  +    +   +   ++D++P +   AR  G   H  DA H ++L H G+  V +AVVTIPDP AA+ V+  IR   P
Sbjct:  375 ADTFTERLLALISHRKPLAA-DL-SSSIQPVPANQVLVVGLGPAGRQVVKTLVAHRLEPVLIDVNPKSRDYARQQGLRLHLGDAGHEEILMHAGLADVCMAVVTIPDPHAAVQVVAMIRRLRP 495          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: A0A518D554_9BACT (Glutathione-regulated potassium-efflux system protein KefC n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D554_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 5.000e-9
Identity = 32/102 (31.37%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   73 DMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVH 378
            D+ E       + I+GFGPAG  +G    +      V+D+ P+ +  AR++G  A   DA+  + L H GI H    V+ +PD  AA  ++  +R  AP++ 
Sbjct:  411 DVVEPGHGAAEVFIVGFGPAGQEVGRELHENGRETLVLDLGPSNVDLARSIGLRAAVGDATSTETLIHHGIEHARALVIALPDHAAAQQIVAAVRTLAPSIQ 512          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: Q314W8_OLEA2 (Sodium/hydrogen exchanger n=2 Tax=Oleidesulfovibrio alaskensis TaxID=58180 RepID=Q314W8_OLEA2)

HSP 1 Score: 60.1 bits (144), Expect = 6.080e-8
Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:   88 SDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAVHFFS 387
            SDH   LVIIG+GP G  +  AA    I   V+D +P T+R  R  G      DA+   +LEH G+       V + DP+AA  V   +R  +P V   +
Sbjct:  403 SDH---LVIIGYGPGGRHLAQAARLWNIDYVVIDSNPDTVRDERARGVPIMFGDAASETMLEHAGVERARAVAVVVSDPVAARTVTALVRELSPDVQIIT 499          
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Match: S7VJC4_9DELT (Sodium/hydrogen exchanger n=1 Tax=Desulfovibrio sp. X2 TaxID=941449 RepID=S7VJC4_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 8.300e-8
Identity = 39/117 (33.33%), Postives = 55/117 (47.01%), Query Frame = 1
Query:   25 RTHRMLGLGASPAAALDMGESSDHPQRLVIIGFGPAGMAIGNAAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDIAVVTIPDPLAAIAVIKQIRNSAPAV 375
            R  R+ GL A    A     +      L+I+GFGP G  +  AA    +   VV+ +P T+RA R  G      DA+   +LEH G+       VTI DP A   ++  +R+ AP V
Sbjct:  389 RRTRLPGLLAGHGLATPPEGTERLQGHLIIVGFGPGGRQMAQAAELWRLPYVVVEGNPDTVRAEREAGRPIFFGDATSEHILEHAGVTRARAVAVTISDPAACRGIVFAVRDLAPEV 505          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126460.5332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CJ92_9BACT3.250e-4259.69RCK N-terminal domain-containing protein n=2 Tax=P... [more]
A0A7Y2I0J0_9BACT2.530e-2146.85Sodium:proton exchanger n=1 Tax=Phycisphaerales ba... [more]
A0A2A5DF07_9BACT4.080e-1745.36Sodium:proton exchanger n=1 Tax=Planctomycetes bac... [more]
A0A2S8K7Z6_9DELT1.160e-1233.33Sodium:proton exchanger n=1 Tax=Desulfobacteraceae... [more]
A0A497E8E6_9BACT2.930e-1236.89Sodium:proton exchanger n=1 Tax=Acidobacteria bact... [more]
UPI0019938D3E9.650e-1234.40NAD-binding protein n=1 Tax=Planctomycetaceae bact... [more]
A0A496ZJK0_9DELT3.060e-1035.77Sodium:proton exchanger n=2 Tax=Deltaproteobacteri... [more]
A0A518D554_9BACT5.000e-931.37Glutathione-regulated potassium-efflux system prot... [more]
Q314W8_OLEA26.080e-836.00Sodium/hydrogen exchanger n=2 Tax=Oleidesulfovibri... [more]
S7VJC4_9DELT8.300e-833.33Sodium/hydrogen exchanger n=1 Tax=Desulfovibrio sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126460contigM-pyrifera_M_contig126460:107..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.1
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog756272.Plabr_0286
KEGG koko:K03455
KEGG TC2.A.37
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
EggNOG OGs2IY3H@203682,COG0475@1,COG0475@2,COG1226@1,COG1226@2
COG Functional cat.P
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.9663908-CDS-M-pyrifera_M_contig126460:106..4961622815778.9663908-CDS-M-pyrifera_M_contig126460:106..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126460 107..496 +
1692277565.3141086-CDS-M-pyrifera_M_contig126460:106..4961692277565.3141086-CDS-M-pyrifera_M_contig126460:106..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126460 107..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126460.5332.1prot_M-pyrifera_M_contig126460.5332.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126460 107..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126460.5332.1

>prot_M-pyrifera_M_contig126460.5332.1 ID=prot_M-pyrifera_M_contig126460.5332.1|Name=mRNA_M-pyrifera_M_contig126460.5332.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MLAPTASSRTHRMLGLGASPAAALDMGESSDHPQRLVIIGFGPAGMAIGN
AAIKLPIRVDVVDMSPTTIRAARTMGFHAHTADASHADVLEHLGIHHVDI
AVVTIPDPLAAIAVIKQIRNSAPAVHFFS*
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mRNA from alignment at M-pyrifera_M_contig126460:107..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126460.5332.1 ID=mRNA_M-pyrifera_M_contig126460.5332.1|Name=mRNA_M-pyrifera_M_contig126460.5332.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig126460:107..496+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCACCGACTGCATCGAGCCGGACTCATCGGATGCTGGGTCTTGG GGCATCGCCTGCTGCTGCACTGGACATGGGGGAATCATCCGATCATCCTC AGCGTCTCGTAATCATCGGATTCGGTCCCGCAGGTATGGCAATCGGCAAT GCGGCGATCAAGCTACCGATCCGCGTAGATGTAGTGGACATGAGCCCAAC GACGATCCGCGCAGCACGCACGATGGGGTTTCATGCGCACACAGCAGACG CATCGCACGCAGATGTTCTCGAGCACTTAGGGATTCATCATGTCGATATC GCTGTCGTGACGATCCCCGACCCACTCGCGGCGATTGCAGTCATCAAGCA GATCCGTAACAGCGCACCTGCTGTCCATTTTTTTTCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126460:107..496+

>mRNA_M-pyrifera_M_contig126460.5332.1 ID=mRNA_M-pyrifera_M_contig126460.5332.1|Name=mRNA_M-pyrifera_M_contig126460.5332.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig126460:107..496+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCACCGACTGCATCGAGCCGGACTCATCGGATGCTGGGTCTTGG
GGCATCGCCTGCTGCTGCACTGGACATGGGGGAATCATCCGATCATCCTC
AGCGTCTCGTAATCATCGGATTCGGTCCCGCAGGTATGGCAATCGGCAAT
GCGGCGATCAAGCTACCGATCCGCGTAGATGTAGTGGACATGAGCCCAAC
GACGATCCGCGCAGCACGCACGATGGGGTTTCATGCGCACACAGCAGACG
CATCGCACGCAGATGTTCTCGAGCACTTAGGGATTCATCATGTCGATATC
GCTGTCGTGACGATCCCCGACCCACTCGCGGCGATTGCAGTCATCAAGCA
GATCCGTAACAGCGCACCTGCTGTCCATTTTTTTTCTTGAATGCTCGCAC
CGACTGCATCGAGCCGGACTCATCGGATGCTGGGTCTTGGGGCATCGCCT
GCTGCTGCACTGGACATGGGGGAATCATCCGATCATCCTCAGCGTCTCGT
AATCATCGGATTCGGTCCCGCAGGTATGGCAATCGGCAATGCGGCGATCA
AGCTACCGATCCGCGTAGATGTAGTGGACATGAGCCCAACGACGATCCGC
GCAGCACGCACGATGGGGTTTCATGCGCACACAGCAGACGCATCGCACGC
AGATGTTCTCGAGCACTTAGGGATTCATCATGTCGATATCGCTGTCGTGA
CGATCCCCGACCCACTCGCGGCGATTGCAGTCATCAAGCAGATCCGTAAC
AGCGCACCTGCTGTCCATTTTTTTTCTTGA
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