mRNA_M-pyrifera_M_contig126452.5327.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126452.5327.1
Unique NamemRNA_M-pyrifera_M_contig126452.5327.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: B7GA09_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA09_PHATC)

HSP 1 Score: 100 bits (250), Expect = 3.780e-25
Identity = 50/78 (64.10%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            SYSR+VG+ITKL+ +L +LPADN FR+ +TD++L KL  MG+I +TKSL K E VTVSA+ RRRLPV+MVRLKMA+++
Sbjct:   45 SYSRIVGMITKLSAKLKTLPADNSFRIAMTDQLLAKLNDMGVITTTKSLQKAEEVTVSAICRRRLPVIMVRLKMAESI 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: K0R286_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R286_THAOC)

HSP 1 Score: 95.1 bits (235), Expect = 6.890e-23
Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
            SY+++ G +TKLA +L +LPAD+ FR+ +TD++LEKLY++G++ +TKSL K E +T SAL RRRLP+VMVR+KMA  
Sbjct:   45 SYTQICGQVTKLANKLKTLPADDSFRIAMTDQLLEKLYNLGILTTTKSLKKAEEITASALCRRRLPIVMVRMKMAQT 121          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S1VV42_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV42_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.400e-21
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
            SY+R+ G++TKLA +L +L  D+ FR+ +TD++L+KL+ MGLI + KSL+K E +T SAL RRR+PVVMVR+KMA+ 
Sbjct:   45 SYNRICGMVTKLAAKLKTLKQDDPFRIAMTDQLLQKLFDMGLITTKKSLLKAEELTASALCRRRIPVVMVRMKMAET 121          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S2NY68_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY68_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.780e-21
Identity = 41/78 (52.56%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            SY R+ G++T+L  +L +LP D+ FR+ +T+++LEKLY+MG+I+   SL+K E +TVSA+ RRRLPV+MVRL+MA+ +
Sbjct:   45 SYDRIRGMVTRLCAKLKTLPNDDSFRIAMTEQLLEKLYNMGVINEKSSLLKAENITVSAICRRRLPVLMVRLRMAETI 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.420e-21
Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            Y+++VGLITKL  RL +L A ++FR+++T+++LEKL++MG+I++ KSL K E  +VS+  RRRLPVVMVRLKM++ L
Sbjct:   46 YNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETL 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A067CYP3_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYP3_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-20
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            Y+++VG I +L  RL   PA++ FR++ T+ +LEKLY MGLI+ TKSL+K E + VSA+ RRRLPVVMVRLKM++N+
Sbjct:   46 YNKVVGEIGRLVSRLKKRPANDPFRIKTTEALLEKLYQMGLINGTKSLLKAEELNVSAMCRRRLPVVMVRLKMSENI 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A024TJP5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJP5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.670e-20
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            Y++LVG I ++  RL   PA++ FR++ T+++LEKLY MG+I+STKSL+K E + VS+  RRRLPVVMVRLKM++N+
Sbjct:   46 YNKLVGDIGRVVARLKKRPANDPFRIKTTEKLLEKLYHMGIINSTKSLLKAEELNVSSFCRRRLPVVMVRLKMSENI 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S0ARR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ARR3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.880e-20
Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
            +YS++ G +TKL+ +L +L AD+ FR+ +T+++L+KL+ MG++ + KSL K E +T SAL RRRLPVVMVR+KMA+ 
Sbjct:   37 AYSKICGQVTKLSAKLKTLKADDSFRIAMTEQLLDKLFDMGIVTTKKSLQKAEEITASALCRRRLPVVMVRMKMAET 113          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A6U3VKU4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VKU4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.990e-20
Identity = 40/78 (51.28%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
            +Y+++ GL+TKL  +L +LP D+ FR+ +T+++L KL+ MG++ +TKSL K E +T +AL RRRLPVVMVR+KM++ L
Sbjct:   45 AYNKICGLVTKLTAKLKNLPPDDPFRIHMTEQLLTKLHDMGILTTTKSLQKAETITATALCRRRLPVVMVRMKMSETL 122          
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S1U2R4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2R4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-19
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
            Y+RL GLITKL  +L  LP  + FR++ +D++L KLY +G+ID+ KSL K ER++ +A  RRRLPVVMVRLKMA+ 
Sbjct:   46 YNRLAGLITKLVAQLKKLPPSDPFRIKKSDKLLGKLYELGVIDTKKSLEKAERISAAAFCRRRLPVVMVRLKMAET 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7GA09_PHATC3.780e-2564.10Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0R286_THAOC6.890e-2357.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1VV42_9STRA4.400e-2155.84Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2NY68_9STRA8.780e-2152.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7FQ94_ECTSI9.420e-2155.84Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A067CYP3_SAPPC1.300e-2057.14Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
A0A024TJP5_9STRA3.670e-2055.84Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A7S0ARR3_9STRA3.880e-2051.95Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A6U3VKU4_9STRA6.990e-2051.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1U2R4_9STRA1.030e-1956.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126452contigM-pyrifera_M_contig126452:3..236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2850.Phatr15757
Preferred nameIMP3
KEGG koko:K14560
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Ribosomal protein S4/S9 N-terminal domain
EggNOG OGs2XBJZ@2836,COG0522@1,KOG4655@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.7646172-CDS-M-pyrifera_M_contig126452:2..2361622815778.7646172-CDS-M-pyrifera_M_contig126452:2..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126452 3..236 -
1692277565.2468553-CDS-M-pyrifera_M_contig126452:2..2361692277565.2468553-CDS-M-pyrifera_M_contig126452:2..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126452 3..236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126452.5327.1prot_M-pyrifera_M_contig126452.5327.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126452 3..236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126452.5327.1

>prot_M-pyrifera_M_contig126452.5327.1 ID=prot_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLV
KLERVTVSALARRRLPVVMVRLKMADNL
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mRNA from alignment at M-pyrifera_M_contig126452:3..236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126452.5327.1 ID=mRNA_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig126452:3..236- (Macrocystis pyrifera P11B4 male)
AGCTATAGTCGTTTGGTCGGGTTGATCACCAAGTTGGCCCGCCGTCTGTC CTCTCTGCCTGCGGACAACAAGTTCCGGGTGCGTGTGACGGACGAGGTGC TGGAGAAGTTGTACTCGATGGGTCTGATCGACTCGACAAAGTCTTTGGTG AAGCTGGAGCGAGTGACAGTGTCGGCGCTGGCACGAAGGCGGCTGCCCGT GGTGATGGTGCGGCTCAAGATGGCCGACAACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126452:3..236-

>mRNA_M-pyrifera_M_contig126452.5327.1 ID=mRNA_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig126452:3..236- (Macrocystis pyrifera P11B4 male)
AGCTATAGTCGTTTGGTCGGGTTGATCACCAAGTTGGCCCGCCGTCTGTC
CTCTCTGCCTGCGGACAACAAGTTCCGGGTGCGTGTGACGGACGAGGTGC
TGGAGAAGTTGTACTCGATGGGTCTGATCGACTCGACAAAGTCTTTGGTG
AAGCTGGAGCGAGTGACAGTGTCGGCGCTGGCACGAAGGCGGCTGCCCGT
GGTGATGGTGCGGCTCAAGATGGCCGACAACCTCAGCTATAGTCGTTTGG
TCGGGTTGATCACCAAGTTGGCCCGCCGTCTGTCCTCTCTGCCTGCGGAC
AACAAGTTCCGGGTGCGTGTGACGGACGAGGTGCTGGAGAAGTTGTACTC
GATGGGTCTGATCGACTCGACAAAGTCTTTGGTGAAGCTGGAGCGAGTGA
CAGTGTCGGCGCTGGCACGAAGGCGGCTGCCCGTGGTGATGGTGCGGCTC
AAGATGGCCGACAACCTC
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