mRNA_M-pyrifera_M_contig126407.5322.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126407.5322.1
Unique NamemRNA_M-pyrifera_M_contig126407.5322.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126407.5322.1 vs. uniprot
Match: A0A220WB10_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220WB10_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-13
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  100 SHEATKPQSDYSPSPVREKDTKPCRRSLGEGG 195
            SHEATKPQSDYSPSPVREKDTKPCRRSLGEGG
Sbjct:   44 SHEATKPQSDYSPSPVREKDTKPCRRSLGEGG 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126407.5322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A220WB10_9SPHN1.100e-13100.00Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126407contigM-pyrifera_M_contig126407:279..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.5490084-CDS-M-pyrifera_M_contig126407:278..4731622815778.5490084-CDS-M-pyrifera_M_contig126407:278..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126407 279..473 +
1692277565.1672695-CDS-M-pyrifera_M_contig126407:278..4731692277565.1672695-CDS-M-pyrifera_M_contig126407:278..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126407 279..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126407.5322.1prot_M-pyrifera_M_contig126407.5322.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126407 279..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126407.5322.1

>prot_M-pyrifera_M_contig126407.5322.1 ID=prot_M-pyrifera_M_contig126407.5322.1|Name=mRNA_M-pyrifera_M_contig126407.5322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MRLFLVVRKKGKGLPDVDGTAPHQRNTLIQLRLAAFAKASAARLRILLPH
GRRGIIALRLRGFV*
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mRNA from alignment at M-pyrifera_M_contig126407:279..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126407.5322.1 ID=mRNA_M-pyrifera_M_contig126407.5322.1|Name=mRNA_M-pyrifera_M_contig126407.5322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig126407:279..473+ (Macrocystis pyrifera P11B4 male)
ATGCGCCTTTTCCTGGTCGTTCGAAAGAAGGGTAAAGGGCTGCCGGACGT
CGATGGCACAGCGCCCCATCAGCGGAACACCCTCATCCAACTGCGCTTAG
CCGCCTTCGCCAAGGCTTCGGCGGCAAGGCTTCGTATCCTTCTCCCTCAC
GGGAGAAGGGGAATAATCGCTTTGCGGCTTCGTGGCTTCGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126407:279..473+

>mRNA_M-pyrifera_M_contig126407.5322.1 ID=mRNA_M-pyrifera_M_contig126407.5322.1|Name=mRNA_M-pyrifera_M_contig126407.5322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig126407:279..473+ (Macrocystis pyrifera P11B4 male)
ATGCGCCTTTTCCTGGTCGTTCGAAAGAAGGGTAAAGGGCTGCCGGACGT
CGATGGCACAGCGCCCCATCAGCGGAACACCCTCATCCAACTGCGCTTAG
CCGCCTTCGCCAAGGCTTCGGCGGCAAGGCTTCGTATCCTTCTCCCTCAC
GGGAGAAGGGGAATAATCGCTTTGCGGCTTCGTGGCTTCGTGTGAATGCG
CCTTTTCCTGGTCGTTCGAAAGAAGGGTAAAGGGCTGCCGGACGTCGATG
GCACAGCGCCCCATCAGCGGAACACCCTCATCCAACTGCGCTTAGCCGCC
TTCGCCAAGGCTTCGGCGGCAAGGCTTCGTATCCTTCTCCCTCACGGGAG
AAGGGGAATAATCGCTTTGCGGCTTCGTGGCTTCGTGTGA
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