mRNA_M-pyrifera_M_contig126376.5317.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126376.5317.1
Unique NamemRNA_M-pyrifera_M_contig126376.5317.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126376.5317.1 vs. uniprot
Match: UPI000D699D6B (GNAT family N-acetyltransferase n=1 Tax=Nocardioides speluncae TaxID=2670337 RepID=UPI000D699D6B)

HSP 1 Score: 54.7 bits (130), Expect = 9.570e-8
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   34 VIRAATQADFDSISRLYRQLQPSDPALAETTHGAAFDEILRRPGM 168
            +IR A+  DFD+I RLYRQL P DP L +    AAF+EIL+ PG+
Sbjct:    1 MIREASSEDFDAIVRLYRQLHPQDPILEDGADRAAFEEILKTPGL 45
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BLAST of mRNA_M-pyrifera_M_contig126376.5317.1 vs. uniprot
Match: A0A6B2TY38_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Streptomyces sp. SID13031 TaxID=2706046 RepID=A0A6B2TY38_9ACTN)

HSP 1 Score: 46.6 bits (109), Expect = 9.150e-5
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   34 VIRAATQADFDSISRLYRQLQPSDPALAETTHGAAFDEILRRPGM 168
            + R A   DF+S+ RLY+QL P DP LA+    AAF++IL   G+
Sbjct:    1 MFREARTGDFESVQRLYQQLHPGDPVLADKVLKAAFEQILDSRGL 45
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126376.5317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000D699D6B9.570e-855.56GNAT family N-acetyltransferase n=1 Tax=Nocardioid... [more]
A0A6B2TY38_9ACTN9.150e-546.67GNAT family N-acetyltransferase n=1 Tax=Streptomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126376contigM-pyrifera_M_contig126376:338..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.33671-CDS-M-pyrifera_M_contig126376:337..5051622815778.33671-CDS-M-pyrifera_M_contig126376:337..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126376 338..505 +
1692277565.0820642-CDS-M-pyrifera_M_contig126376:337..5051692277565.0820642-CDS-M-pyrifera_M_contig126376:337..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126376 338..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126376.5317.1prot_M-pyrifera_M_contig126376.5317.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126376 338..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126376.5317.1

>prot_M-pyrifera_M_contig126376.5317.1 ID=prot_M-pyrifera_M_contig126376.5317.1|Name=mRNA_M-pyrifera_M_contig126376.5317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
RRSGRGGILAEVIRAATQADFDSISRLYRQLQPSDPALAETTHGAAFDEI
LRRPGM
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mRNA from alignment at M-pyrifera_M_contig126376:338..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126376.5317.1 ID=mRNA_M-pyrifera_M_contig126376.5317.1|Name=mRNA_M-pyrifera_M_contig126376.5317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig126376:338..505+ (Macrocystis pyrifera P11B4 male)
CGTCGCAGCGGGCGTGGTGGGATACTCGCCGAGGTGATCCGTGCCGCGAC
CCAAGCTGACTTCGACTCAATCAGCCGTCTCTACCGTCAGCTTCAGCCTT
CAGACCCTGCACTCGCAGAGACCACGCACGGCGCGGCCTTCGACGAGATC
CTTCGACGACCTGGCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126376:338..505+

>mRNA_M-pyrifera_M_contig126376.5317.1 ID=mRNA_M-pyrifera_M_contig126376.5317.1|Name=mRNA_M-pyrifera_M_contig126376.5317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig126376:338..505+ (Macrocystis pyrifera P11B4 male)
CGTCGCAGCGGGCGTGGTGGGATACTCGCCGAGGTGATCCGTGCCGCGAC
CCAAGCTGACTTCGACTCAATCAGCCGTCTCTACCGTCAGCTTCAGCCTT
CAGACCCTGCACTCGCAGAGACCACGCACGGCGCGGCCTTCGACGAGATC
CTTCGACGACCTGGCATGCGTCGCAGCGGGCGTGGTGGGATACTCGCCGA
GGTGATCCGTGCCGCGACCCAAGCTGACTTCGACTCAATCAGCCGTCTCT
ACCGTCAGCTTCAGCCTTCAGACCCTGCACTCGCAGAGACCACGCACGGC
GCGGCCTTCGACGAGATCCTTCGACGACCTGGCATG
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