mRNA_M-pyrifera_M_contig126374.5316.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126374.5316.1
Unique NamemRNA_M-pyrifera_M_contig126374.5316.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A5A8DCF2_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DCF2_CAFRO)

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-22
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 AASELYSR-LGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQIADAL 249
            AA  +YS    F RSVAG WS  SL FY+EQ   GREL  S GQDVNQLAGD+++   GR+LLAYYS+ NTDRP+V ++  A+
Sbjct:   29 AAGTVYSESFRFRRSVAGVWSSASLGFYAEQKAAGRELESSHGQDVNQLAGDMVVGSDGRMLLAYYSKDNTDRPSVDELLAAV 111          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A5A8E9H0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9H0_CAFRO)

HSP 1 Score: 95.1 bits (235), Expect = 4.560e-21
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 AASELYSR-LGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQIADAL 249
            AA  +YS    F RSVAG WS  SL FY+EQ   GREL  S GQDVNQLAGD+++   GR+LLAYYS+ NTDRP+V ++  A+
Sbjct:  284 AAGTVYSESFRFRRSVAGVWSSASLGFYAEQKAAGRELESSHGQDVNQLAGDMVVGSDGRMLLAYYSKDNTDRPSVDELLAAV 366          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A812MWE4_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MWE4_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 5.660e-20
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   16 LYSRL----GFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQ 234
            LY R+    GF +S AG WSP+SL FYS+Q L GRELHPS GQD +++ GD+LLD  G+++LA+YS++  DRP+V++
Sbjct:  230 LYVRVKQSWGFRKSYAGVWSPESLQFYSDQKLQGRELHPSNGQDPHRMGGDILLDGRGQVVLAHYSKSTRDRPSVEE 306          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A813D3K2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D3K2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 6.920e-20
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   16 LYSRL----GFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQ 234
            LY R+    GF +S AG WSP+SL FYS+Q L GRELHPS GQD +++ GD+LLD  G+++LA+YS++  DRP+V++
Sbjct:  230 LYVRVKQSWGFRKSYAGVWSPESLQFYSDQKLQGRELHPSNGQDPHRMGGDILLDGRGQVVLAHYSKSTRDRPSVEE 306          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A1Q9CJV1_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CJV1_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 6.920e-20
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   16 LYSRL----GFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQ 234
            LY R+    GF +S AG WSP+SL FYS+Q L GRELHPS GQD +++ GD+LLD  G+++LA+YS++  DRP+V++
Sbjct:  230 LYVRVKQSWGFRKSYAGVWSPESLQFYSDQKLQGRELHPSNGQDPHRMGGDILLDGRGQVVLAHYSKSTRDRPSVEE 306          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A812ZUV3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZUV3_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 2.900e-18
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 AASELYSRLGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQIA 240
            A ++ Y+  GF RS+AG W   SL +Y++Q+  GREL  S GQDV+QLAGD+++   G ++L YY   NTDRP V  +A
Sbjct:   49 APADAYAAFGFKRSLAGVWGAQSLGWYAQQAAAGRELQSSRGQDVHQLAGDVVVSAEGTVVLPYYGLDNTDRPGVTTLA 127          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A7C4Q3G6_9CHLR (Redoxin domain-containing protein n=1 Tax=Bellilinea caldifistulae TaxID=360411 RepID=A0A7C4Q3G6_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 4.940e-13
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 DAASELYSRLGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLAGDLLLDEHGRLLLAYYSRTNTDRP 222
            D    LY   G  RS+  TW+  +L FY+++ L G +L  + G D++QL GD +LD+HG+++LAYYS   TDRP
Sbjct:   51 DPQKNLYQAFGLQRSIRRTWNLPTLWFYAQKLLRGEKLIAT-GGDLHQLGGDFILDQHGQIVLAYYSHDPTDRP 123          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A6P8J0V5_ACTTE (uncharacterized protein LOC116305662 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J0V5_ACTTE)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-12
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   13 ELYSRLGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQD-VNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQIADAL 249
            +LY  LG  RSVA TW   +L +Y+EQ   GR+L     +D  +Q+ GD ++D HG + L Y S+ +TDRPTV+ +  AL
Sbjct:  240 KLYQALGLHRSVAKTWCTIALVYYAEQKRKGRKLFGLFEEDDPSQMGGDFIIDCHGNMKLVYQSKVSTDRPTVEDLVQAL 319          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A817NP41_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NP41_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 5.500e-11
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 DAASELYSRLGF-ARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQ--DVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQIADAL 249
            D+   LY   GF A++ A  W+  +L +Y EQ L GR+L   + +  D NQ+ G+ ++D +GR++  Y S+T TDRP V+Q+   L
Sbjct:  160 DSDRRLYRHFGFPAKAYARVWNVQTLDYYVEQKLSGRQLPTKLDKNDDPNQMGGNAIIDRNGRVIWVYKSKTPTDRPNVKQLQSIL 245          
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Match: A0A818EMF4_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818EMF4_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 8.870e-10
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   16 LYSRLGF-ARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQ--DVNQLAGDLLLDEHGRLLLAYYSRTNTDRPTVQQI 237
            LY   GF  ++ A  W+  +L +Y EQ L G++L  ++ +  D NQ+ G++++D+ GR++  Y S++ TDRP+V+Q+
Sbjct:   49 LYHYFGFPGKAYARVWNVQTLDYYVEQKLNGKKLPTALDKNDDPNQMGGNVIIDQSGRVIWVYKSKSPTDRPSVRQL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126374.5316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DCF2_CAFRO2.700e-2257.83Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A5A8E9H0_CAFRO4.560e-2157.83Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812MWE4_SYMMI5.660e-2054.55Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A813D3K2_9DINO6.920e-2054.55Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A1Q9CJV1_SYMMI6.920e-2054.55Uncharacterized protein n=2 Tax=Symbiodinium micro... [more]
A0A812ZUV3_9DINO2.900e-1848.10Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7C4Q3G6_9CHLR4.940e-1344.59Redoxin domain-containing protein n=1 Tax=Bellilin... [more]
A0A6P8J0V5_ACTTE1.730e-1243.75uncharacterized protein LOC116305662 n=1 Tax=Actin... [more]
A0A817NP41_9BILA5.500e-1138.37Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A818EMF4_9BILA8.870e-1036.36Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126374contigM-pyrifera_M_contig126374:260..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.2941647-CDS-M-pyrifera_M_contig126374:259..5081622815778.2941647-CDS-M-pyrifera_M_contig126374:259..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126374 260..508 -
1692277565.072807-CDS-M-pyrifera_M_contig126374:259..5081692277565.072807-CDS-M-pyrifera_M_contig126374:259..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126374 260..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126374.5316.1prot_M-pyrifera_M_contig126374.5316.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126374 260..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126374.5316.1

>prot_M-pyrifera_M_contig126374.5316.1 ID=prot_M-pyrifera_M_contig126374.5316.1|Name=mRNA_M-pyrifera_M_contig126374.5316.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
DAASELYSRLGFARSVAGTWSPDSLSFYSEQSLGGRELHPSMGQDVNQLA
GDLLLDEHGRLLLAYYSRTNTDRPTVQQIADAL
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mRNA from alignment at M-pyrifera_M_contig126374:260..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126374.5316.1 ID=mRNA_M-pyrifera_M_contig126374.5316.1|Name=mRNA_M-pyrifera_M_contig126374.5316.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig126374:260..508- (Macrocystis pyrifera P11B4 male)
GACGCTGCGTCGGAGCTGTACAGCCGTCTCGGCTTCGCCCGAAGCGTCGC TGGGACGTGGAGCCCCGACTCTTTGTCCTTCTACTCGGAGCAGAGTCTGG GAGGGCGCGAGTTGCACCCCAGCATGGGTCAGGATGTGAACCAGCTGGCG GGTGACCTGCTGCTGGATGAGCACGGTCGCCTGCTGCTAGCCTATTACTC CCGCACCAACACCGACAGGCCCACCGTGCAGCAGATCGCAGACGCCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126374:260..508-

>mRNA_M-pyrifera_M_contig126374.5316.1 ID=mRNA_M-pyrifera_M_contig126374.5316.1|Name=mRNA_M-pyrifera_M_contig126374.5316.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig126374:260..508- (Macrocystis pyrifera P11B4 male)
GACGCTGCGTCGGAGCTGTACAGCCGTCTCGGCTTCGCCCGAAGCGTCGC
TGGGACGTGGAGCCCCGACTCTTTGTCCTTCTACTCGGAGCAGAGTCTGG
GAGGGCGCGAGTTGCACCCCAGCATGGGTCAGGATGTGAACCAGCTGGCG
GGTGACCTGCTGCTGGATGAGCACGGTCGCCTGCTGCTAGCCTATTACTC
CCGCACCAACACCGACAGGCCCACCGTGCAGCAGATCGCAGACGCCCTTG
ACGCTGCGTCGGAGCTGTACAGCCGTCTCGGCTTCGCCCGAAGCGTCGCT
GGGACGTGGAGCCCCGACTCTTTGTCCTTCTACTCGGAGCAGAGTCTGGG
AGGGCGCGAGTTGCACCCCAGCATGGGTCAGGATGTGAACCAGCTGGCGG
GTGACCTGCTGCTGGATGAGCACGGTCGCCTGCTGCTAGCCTATTACTCC
CGCACCAACACCGACAGGCCCACCGTGCAGCAGATCGCAGACGCCCTT
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