mRNA_M-pyrifera_M_contig12635.5314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12635.5314.1
Unique NamemRNA_M-pyrifera_M_contig12635.5314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A6H5L0S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 4.330e-73
Identity = 128/171 (74.85%), Postives = 148/171 (86.55%), Query Frame = 1 
Query:  277 SRRSAKKSKARGGPPVIPEAKKVS--EPQQVSKAVVAEVLGTQAKKDGVGTSDETAARKAIENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            SR+++KK+KARGG     E KK +  +PQ+VSK+VVAEVLG QA K+G  T+D+ +ARKAIE ME +ERERI +RQ RID+VM AK A+E DP+AGSIPEIVSNRMLSRMVPFFLLPA GGVGVFVAVYVLSH YDYTIPAY+VAYATQAPFF+ALAGITYAIMSASWDE+
Sbjct:   90 SRKASKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGSTADQVSARKAIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDED 260
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: D8LCB7_ECTSI (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 3.570e-70
Identity = 124/167 (74.25%), Postives = 142/167 (85.03%), Query Frame = 1 
Query:  289 AKKSKARGGPPVIPEAKKVS--EPQQVSKAVVAEVLGTQAKKDGVGTSDETAARKAIENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            AKK+KARGG     E KK +  +PQ+VSK+VVAEVLG QA K+G  T+D+ +ARK IE ME +ERERI +RQ RID+VM AK A+E DP+AGSIPEIVSNRMLSRMVPFF+LPA GGVGVFV VYVLSH YDYTIPAY+VAYATQAPFF+ALAGITYAIMSASWDE+
Sbjct:   94 AKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDED 260
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A835Z7Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.960e-28
Identity = 57/116 (49.14%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:  436 AARKAIENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            AA++ +  M+++   R++ ++ R+ ++ AA+  ++D+P+AG IP++V+NRML+RM+PFF+LP   GVGVFV  +VL+  YD +    +VA+ATQAPF I+L GITYAI+SASWD E
Sbjct:   94 AAKEDLARMKEERERRVQAQKQRMADIKAAQAITKDNPDAGVIPDLVANRMLARMIPFFVLPVLAGVGVFVYFFVLAKRYDTSFQPGMVAFATQAPFAISLVGITYAILSASWDPE 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A7S2STX2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.060e-20
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 1 
Query:  394 TQAKKDGVGTSD----ETAAR--KAIENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEEV 786
            TQ + + +G  D    ET +R   A+E +  +   +  E Q R++++   +    ++P+AG IPE+V+ RML RM+P   +P FGG+ +FV  Y+ +  +D  I   +VAYAT AP+ + LAG+TY I+SASWD EV
Sbjct:   58 TQPRAEAIGDEDLGSAETPSRGADALEELRLQSERKGMEVQRRLEDMKEVEKVLRENPDAGVIPEVVAQRMLGRMLPLAAVPIFGGIALFVGFYIAATKWDLEIQPTVVAYATTAPWLLGLAGLTYGILSASWDPEV 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: R1FQ09_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQ09_EMIHU)

HSP 1 Score: 92.4 bits (228), Expect = 1.220e-18
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  523 AKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            A+  S  DP+AG +PE+VSNRMLSR+VPF  LP FG   VFV  Y  +   D  +P  ++AYATQA F ++ AGIT+ ++S SWDEE
Sbjct:  106 AEEMSPVDPSAGVMPEVVSNRMLSRVVPFAGLPVFGSFLVFVGAYYANTQLDLDVPPQVIAYATQACFALSFAGITWGVLSTSWDEE 192
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A7S2NSH2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NSH2_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 4.650e-18
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:  544 DPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            DP+AG +PE+VS RML+R+VPF  LP FGG  VFV  Y  +   +  +P  +VAYATQ    ++ AGITY +MS SWDEE
Sbjct:  139 DPSAGVMPEVVSQRMLNRVVPFAALPVFGGALVFVGFYYANTQLELDVPPMIVAYATQVLLLLSFAGITYGVMSTSWDEE 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A6U0UN43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UN43_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.780e-18
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 1 
Query:  352 PQQVSKAVVAEV-LGTQAKKDGVGTSDETAARKAIENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            PQ+++     EV L   + +D +     TA ++ ++ + +    +  ER A++D  +  +     +P AG IP+ VS RML RMVP F LP   G+  FVA Y         +   +VAY+TQAPFF+ L G++Y ++SASWDE+
Sbjct:   68 PQEINVGAAEEVNLAQSSARDNL-----TAGQQELQQLRQARASKDAERAAKVDMYVEERAEIRKNPRAGVIPDAVSKRMLGRMVPLFSLPFVLGIAAFVAFYFYGQKTGNQMQPTVVAYSTQAPFFLGLVGLSYGVLSASWDED 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A7S3U2G1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U2G1_9SPIT)

HSP 1 Score: 86.3 bits (212), Expect = 3.140e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  544 DPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEE 783
            DP AG +PE VSNRM++R++PF  LP FG   +F   Y L+   DY IP   +A ATQA F ++ AGIT+ +MS SWDE+
Sbjct:  136 DPTAGVMPERVSNRMIARVIPFAGLPVFGAFALFGGAYYLNTQLDYGIPPQAIALATQAMFALSFAGITWGVMSTSWDED 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: A0A7S2BKL3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKL3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.060e-16
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  481 RIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEEV 786
            + +ER A +  V  A    +++P AG IPE V+NRML RM+     P FGG+G+FV  Y+ +  +D  +   +VA AT  P+ + LAG+TY ++SASWD EV
Sbjct:   94 KADERYAELSEVQEA---LKENPAAGVIPEAVANRMLKRMLTLAAPPIFGGIGLFVVFYISATQWDTDVAPPIVAAATTVPWLLGLAGLTYGVLSASWDPEV 192
[Close]
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Match: W7TZB0_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.070e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:  541 DDPNAGSIPEIVSNRMLSRMVPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGITYAIMSASWDEEV 786
            D+   G +PE +SNRML R++PF L P  GG+G+F     L+ N +  +P   VA++TQ PF  AL GITY+IMS SW+ EV
Sbjct:  166 DEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEV 247
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12635.5314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0S3_9PHAE4.330e-7374.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB7_ECTSI3.570e-7074.25All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835Z7Y5_9STRA3.960e-2849.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2STX2_9STRA1.060e-2039.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
R1FQ09_EMIHU1.220e-1852.87Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2NSH2_9EUKA4.650e-1853.75Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A6U0UN43_9STRA5.780e-1835.86Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3U2G1_9SPIT3.140e-1651.25Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S2BKL3_9STRA7.060e-1643.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TZB0_9STRA8.070e-1648.78Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12635contigM-pyrifera_M_contig12635:2691..7525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.6
Seed ortholog evalue2.1e-58
Seed eggNOG ortholog2880.D8LCB7
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Protein of unknown function (DUF3464)
EggNOG OGs2AEZ6@1,2RXKE@2759
Ec32 ortholog descriptionProtein of unknown function DUF3464
Ec32 orthologEc-14_005350.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size792
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12635.5314.1prot_M-pyrifera_M_contig12635.5314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12635 2691..7525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.1133144-CDS-M-pyrifera_M_contig12635:2690..28921622815778.1133144-CDS-M-pyrifera_M_contig12635:2690..2892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 2691..2892 +
1692277564.953169-CDS-M-pyrifera_M_contig12635:2690..28921692277564.953169-CDS-M-pyrifera_M_contig12635:2690..2892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 2691..2892 +
1622815778.1238122-CDS-M-pyrifera_M_contig12635:2937..31781622815778.1238122-CDS-M-pyrifera_M_contig12635:2937..3178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 2938..3178 +
1692277564.9660766-CDS-M-pyrifera_M_contig12635:2937..31781692277564.9660766-CDS-M-pyrifera_M_contig12635:2937..3178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 2938..3178 +
1622815778.1354818-CDS-M-pyrifera_M_contig12635:4537..46161622815778.1354818-CDS-M-pyrifera_M_contig12635:4537..4616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 4538..4616 +
1692277564.9744222-CDS-M-pyrifera_M_contig12635:4537..46161692277564.9744222-CDS-M-pyrifera_M_contig12635:4537..4616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 4538..4616 +
1622815778.1456635-CDS-M-pyrifera_M_contig12635:5183..52611622815778.1456635-CDS-M-pyrifera_M_contig12635:5183..5261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 5184..5261 +
1692277564.9839945-CDS-M-pyrifera_M_contig12635:5183..52611692277564.9839945-CDS-M-pyrifera_M_contig12635:5183..5261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 5184..5261 +
1622815778.158362-CDS-M-pyrifera_M_contig12635:6650..67281622815778.158362-CDS-M-pyrifera_M_contig12635:6650..6728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 6651..6728 +
1692277564.9946077-CDS-M-pyrifera_M_contig12635:6650..67281692277564.9946077-CDS-M-pyrifera_M_contig12635:6650..6728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 6651..6728 +
1622815778.171727-CDS-M-pyrifera_M_contig12635:7411..75251622815778.171727-CDS-M-pyrifera_M_contig12635:7411..7525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 7412..7525 +
1692277565.0057638-CDS-M-pyrifera_M_contig12635:7411..75251692277565.0057638-CDS-M-pyrifera_M_contig12635:7411..7525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12635 7412..7525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12635.5314.1

>prot_M-pyrifera_M_contig12635.5314.1 ID=prot_M-pyrifera_M_contig12635.5314.1|Name=mRNA_M-pyrifera_M_contig12635.5314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=264bp
MGRSYAAAVAVFAAVILHNTVGFYIPGPATSTRSLQQPPLPASARAQQRP
QQEQQPQRKQGQLLGKQRPLAAETDNGGDGGGEGFSSGPDKVSRRSAKKS
KARGGPPVIPEAKKVSEPQQVSKAVVAEVLGTQAKKDGVGTSDETAARKA
IENMEKKERERIEERQARIDNVMAAKTASEDDPNAGSIPEIVSNRMLSRM
VPFFLLPAFGGVGVFVAVYVLSHNYDYTIPAYLVAYATQAPFFIALAGIT
YAIMSASWDEEVG*
back to top

mRNA from alignment at M-pyrifera_M_contig12635:2691..7525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12635.5314.1 ID=mRNA_M-pyrifera_M_contig12635.5314.1|Name=mRNA_M-pyrifera_M_contig12635.5314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4835bp|location=Sequence derived from alignment at M-pyrifera_M_contig12635:2691..7525+ (Macrocystis pyrifera P11B4 male)
ATGGGTAGAAGCTATGCAGCGGCTGTTGCTGTTTTTGCGGCCGTGATATT
GCATAACACCGTCGGTTTCTACATCCCAGGCCCGGCTACTTCCACGCGAT
CGCTTCAACAACCCCCTCTTCCCGCCTCTGCGCGAGCGCAACAGCGACCA
CAGCAAGAGCAACAACCCCAGCGGAAGCAGGGCCAACTCCTAGGAAAGCA
GCGTTCTCTCTACGACAATGCGCTAAAGCCTTCACGATGGAGCACAGGAC
CGTTAGCAGCGGAGACGGACAACGGCGGTGATGGCGGCGGCGAGGGGTTC
AGCTCTGGTCCTGACAAGGTTTCGCGCAGGTCTGCGAAGAAGTCGAAGGC
CAGGGGCGGGCCGCCTGTGATACCAGAGGCCAAGAAGGTCTCAGAGCCTC
AGCAGGTCAGCAAGGCAGTGGTGGCGGAAGTGCTGGGCACTCAGGCCAAG
AAGGACGGAGTGGGTACCTCCGACGAAACAGCGGCCAGGTTAGCCCATCA
AATCCCAGTGGCCGCCACCGCGTACTGCTATTGATATATCATTGACATAC
CGAGTAGCTGCTACGTATGATACACTACTATTAATACTATGATCAGCTGC
AGCTCCTATGTTACTACCTAGTACTGCTGTGCATCGTACTGGTTTGGTCT
GCGCACACTTTACTGGAAGTGTCGTGAGCCTATCGTTTTGTTGGCAAGCA
GCCCATGGCCGTTGCGCGTGGGTCCAGCATACAGCGCAGCAATCCCTGTG
TTGTAGCATTGCATTATAGCAGCAGGACACTTCGAGACTTGTTTTGCCGG
TGCAACAGGTGCAAAGCACTTCACCGCTGACCTTGTCGAAGTAAGGACTC
AGCCGTGTGTGCAATACCTACTATTGTACGAGTACCACTACGCTGTCGTA
TCGGGCAGCAGCAGGGTTTATAGTTCATACCAGGTACACACAAAAGTCGA
AAATGCAGGGTATAGTTCATGTGCAGCAACTATTTTGTACAGCACGTATA
GAGCCCAAAGCTACAGCGATAGCAGCAGCTGACGAAAGCCAAGCAAGAAA
AAAGTATACCTTCTGACTTCTGACTGCCTTATACGTACCAGGTACAGCAG
TATGATGCCCCGGAGCAGCAGTACGAGTATGTTGACTCTCTTGTGCAACA
TCATGTCACTCAGTTCTCGGTTGCTCTGCTCTTGTGTTTGTTGTCGCCGC
TCGCGTGCGGTGCTTTTATAGCCGTGACAGCAGTGGCACGGCGGCTCGCT
AAAATGCAGATCAGCACCGCGTACTTGCAGCATGATTCGTTTATACGTAC
ATTCAGTTTCCCGTATAATATTGCGGTTCTTCCGTCGAACGCTGGACACT
TGCAAACTTTCCACGCCTCGGACAGATACATGATCTACAGATAGATCATG
TACATACATATAGATATTATATATCCTAACCTTCGTTTGTGATGTGGTGC
GCTTGATCTGTATCGTACAGATCCAACCAAAAAAACTTGGGCTAAGGTCA
TGCCGACGGTACGGCTCCCACCCGGCAGCATGAGATCGTACAGAGCAGGA
ATAGATGATCTATCTGCCCTGAAATATCTAGATCGTGATGTGGGAATGAT
CTGTAGATGATCTGCAGACGATCTGTCTGAGGTGTGAAACTTTCATGACA
ACAACCACCGCCGTTTTTTTTTTGTCTTCATAGTCGTACTTACCAAGTAA
TATTTATATCGCCATCCGCTGTACGGGTACACCTCTGGTTTCCACAATCT
GTGTATGTGCCCATCATCTGCGCCCTCGCTTTTTTGTTTTTGCCGTCGTC
GTCGTCGTCGCCGCCGCTGTGGTCATTTGGGCGAAACTTGTCTACAGGAA
GGCAATCGAAAACATGGAAAAAAAGGAGCGGGAGCGCATCGAGGAGCGCC
AGGCGCGCATCGACAACGTTATGGCGGTGAGTCATGGAAGGAGGGAGGGA
GGCGAGAGAGGGAGTTGCAACGGCATGTACTGTACGGCTTGGGGTTTAGG
GTATGGAGTGTAGGTGATTCGGGGTTTTTTGTTTATGTGTTGTCGCTGCT
GCTTCCGCGGCATCCTGTTTTATAGCGCCAACGGTGGGGTTGCAGCAGCA
GAAGCAGGCCTTCTACTGCAAACTGGTCCCTCTCAAAAGGAAGCGAGGGT
GTGGGCGGGAGAGATAGAACAAGAGGGACGGTAGAGAGAGAATGAGAGAC
AGATAGACACGCAAACAGACACGGAGAAAGAAACGGAGAGAGGGGGAGAA
GGAGGGAGTGAAGGAGAGAGCGAACGAGAGAGAGATGTATTACATCCCGC
CCGTAGTGTCAAAGGGCGCGAGCGTTGGTGCGGCGGCTATAAACCCCGTT
GCATGCCGGCTATAAAAACCCTCCGTTTATTTCTCTCGGTCACCGTTCAC
AACAGTTGTCCCCCTTGCCCCCCGCGCGCCCCCTCCGCTGTCCCCCCCAC
CCTTCCCCCCTTCCCCCCGCTAAATTTTGTTGTTGGTGTTCAGGCGAAAA
CGGCGTCGGAGGACGACCCGAACGCCGGTAGCATCCCGGAAATCGTGTCC
AACCGCATGCTCAGTAGGATGGTGAGTGACATGTCAAAAACAAAAAACAC
GCACAAAAAAAAATAAACGTCTTTGCAAGAGTCGCAGCCGCCGCATTTGG
TGTTAAGCCGATTGATGATTATTGGTTGTCACCATCTTCCTCTCCTCCAC
ACCTCTCCGCGGTGTCGTCGTCCTCGTTCCAAGTAGCAGCATTCCCCCGT
CCCCCGTCGGCGACAGTGTGCCGAACGTCCCCACATGATTATGCGATTTC
GGCGAATGTATGTATGTACATGCAAGCGAGAAGCCTGCACGCATCGGACA
AATCGCGGTCTGCAGTAGGGATGCTAGATTCCAATCACGAAAGAATATAG
TAATCAGGACCAAATATACTTAGTAAAAATACTGGAATATATAGTTTTTT
TGTGTACATGATGGGTCTTTATTTCTACGGCCCCCCGCAATAAACTTTTT
TTATAGTGTATATTCCGTTTTGAGATGTTGTGCAAGATCCATACCTATAC
CATGCAGCTCCCACCCAGAAAAAACTTGATCTGCGGTACGTACATTAGGA
TCTACCGAAAGTAGATGGTGCAGATCCTCCTATGAATCAGGGATCTATCT
GATCCAGATCATGTAAAGGAGGGGGATCTGATCCGTCCGATATATACGGA
AAGCCTCACGTCGGCGGCGGGACTGGCTAGCAGGGTTGTCGGCCGGCCGG
CTCCGCCTTCTTCTTGTCCTTGTTTTGTTTTTTAATGAAACTCTTCGAAT
TGTCATAGTTGTGCACCCCCCCCCCCCGCCAGTGTTGTGTATCTATAGGT
TGGGTTGGCGTCGGTTGGCGACGACGCTGTAAAACACGCCTCTTTCTTAG
TGAGCTGGTCAATCAGGGTACCGTTTGTTTTTTTCTGGCGGTCGCCACGG
CTGGCGGTCGAGTTAGATCATCTTGTGCGGGGTGGAGAACCTTGACTCCG
CACAAGGGGGATGTCCGTATTACGTAGTAGGTATATGGTAAGGCACCGAC
GAGGTAGTTGCATGGTATTCTATACCCGTTACTGTCTCTGAAGATGGCCG
CACCAGAAAATACATCAATCCATTGACGCTGTCATCAATACGCAAGAAAA
TTCGCGTGACAAGCGGTTCTTAGTAGGATGCAGCTCGTCCTTCATGCGAC
CCGCCCAACACCTCACTGCGCTTCGCGACTGGTGCAGGCAATGTCTGCCT
GTGTAAACCCGAAGCGCTCCGTCCCGGCATTACAGGGGTGCGAGGGGCTA
TGGTCATACGACTACTGCTGTACGGCCATGCATGATATGAGTACACCCCC
TCCCTCGGCTGTCGCTGCCTAACCACCACCTCCGCCCTCACGCCCTCTTC
CCATCCCGTTCCCTTTCACCTCTGTCCGCCCCCACCCACCCCCTTTATCC
GTTCGTGCAGGTTCCGTTCTTCTTGCTGCCGGCGTTCGGTGGCGTCGGAG
TGTTCGTCGCTGTGTACGTGCTCTCCCACAACTACGATGTGAGAGCCCTG
CCCCCTCCCCCCTCCCTTTCTCTCATTCCGTCTCCCACCTATCTTGTGTG
CCGGCCTGCCTGCGTCAGGCGAGGCACTCAGCGCTGTGCAACAGCAGCAG
ACTAGGCCAACACGCAGTTTCTTATTTTCAGCTGTTGGCGATCGTCAATC
TTTTTTTGCACGCCTGTATATTGTGTGCTACACGGCACACAGCGCGCCCA
GACCTCGACGGTAATTTATCACCGCCGACCTGTCCCTACATAAAAATCTG
GAGTTTTGGCGAGCCGTGCCGTGTGCGGAGAGATAATGGCAAAAACACCA
GTCATTCTCAAAATACCTAGTTTTACATTTACGTATCTGGTATACCGTTG
TGACACGCCTTGCACGGCGAGATGTATATTGCGGCGTGGACGACATTTGC
CGCCACCCACCACTCCTGTCCTCTTCCCTCCCGTCCCTTCCCCTCCCCCC
GCCCCCCCTCCCCCCCTCCCTCCCCGCTCTCCTCGAACAAACGAAGTCGG
AAGTAATATAGTTTACCTTATACAGTACATAAAAAGGCAAACGCAAGAGT
GACAAGCACCAGCGCAGTACCCCACCACTCTAAAACCTTGCCCTGCCCTG
CTCTTCTCTCGTCTTTCCTGACGGCGATGCCCGATGATGCCCCATGATGC
CCTGCCGTCTCCTCGCACCAGTACACCATCCCGGCGTACCTCGTGGCGTA
CGCTACCCAGGCGCCGTTCTTCATCGCCCTCGCGGGGATCACGTACGCGA
TCATGTCCGCCAGCTGGGACGAGGAGGTGGGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12635:2691..7525+

>mRNA_M-pyrifera_M_contig12635.5314.1 ID=mRNA_M-pyrifera_M_contig12635.5314.1|Name=mRNA_M-pyrifera_M_contig12635.5314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1584bp|location=Sequence derived from alignment at M-pyrifera_M_contig12635:2691..7525+ (Macrocystis pyrifera P11B4 male)
ATGGGTAGAAGCTATGCAGCGGCTGTTGCTGTTTTTGCGGCCGTGATATT
GCATAACACCGTCGGTTTCTACATCCCAGGCCCGGCTACTTCCACGCGAT
CGCTTCAACAACCCCCTCTTCCCGCCTCTGCGCGAGCGCAACAGCGACCA
CAGCAAGAGCAACAACCCCAGCGGAAGCAGGGCCAACTCCTAGGAAAGCA
GCATGGGTAGAAGCTATGCAGCGGCTGTTGCTGTTTTTGCGGCCGTGATA
TTGCATAACACCGTCGGTTTCTACATCCCAGGCCCGGCTACTTCCACGCG
ATCGCTTCAACAACCCCCTCTTCCCGCCTCTGCGCGAGCGCAACAGCGAC
CACAGCAAGAGCAACAACCCCAGCGGAAGCAGGGCCAACTCCTAGGAAAG
CAGCGACCGTTAGCAGCGGAGACGGACAACGGCGGTGATGGCGGCGGCGA
GGGGTTCAGCTCTGGTCCTGACAAGGTTTCGCGCAGGTCTGCGAAGAAGT
CGAAGGCCAGGGGCGGGCCGCCTGTGATACCAGAGGCCAAGAAGGTCTCA
GAGCCTCAGCAGGTCAGCAAGGCAGTGGTGGCGGAAGTGCTGGGCACTCA
GGCCAAGAAGGACGGAGTGGGTACCTCCGACGAAACAGCGGCCAGGACCG
TTAGCAGCGGAGACGGACAACGGCGGTGATGGCGGCGGCGAGGGGTTCAG
CTCTGGTCCTGACAAGGTTTCGCGCAGGTCTGCGAAGAAGTCGAAGGCCA
GGGGCGGGCCGCCTGTGATACCAGAGGCCAAGAAGGTCTCAGAGCCTCAG
CAGGTCAGCAAGGCAGTGGTGGCGGAAGTGCTGGGCACTCAGGCCAAGAA
GGACGGAGTGGGTACCTCCGACGAAACAGCGGCCAGGAAGGCAATCGAAA
ACATGGAAAAAAAGGAGCGGGAGCGCATCGAGGAGCGCCAGGCGCGCATC
GACAACGTTATGGCGGAAGGCAATCGAAAACATGGAAAAAAAGGAGCGGG
AGCGCATCGAGGAGCGCCAGGCGCGCATCGACAACGTTATGGCGGCGAAA
ACGGCGTCGGAGGACGACCCGAACGCCGGTAGCATCCCGGAAATCGTGTC
CAACCGCATGCTCAGTAGGATGGCGAAAACGGCGTCGGAGGACGACCCGA
ACGCCGGTAGCATCCCGGAAATCGTGTCCAACCGCATGCTCAGTAGGATG
GTTCCGTTCTTCTTGCTGCCGGCGTTCGGTGGCGTCGGAGTGTTCGTCGC
TGTGTACGTGCTCTCCCACAACTACGATGTTCCGTTCTTCTTGCTGCCGG
CGTTCGGTGGCGTCGGAGTGTTCGTCGCTGTGTACGTGCTCTCCCACAAC
TACGATTACACCATCCCGGCGTACCTCGTGGCGTACGCTACCCAGGCGCC
GTTCTTCATCGCCCTCGCGGGGATCACGTACGCGATCATGTCCGCCAGCT
GGGACGAGGAGGTGGGCTGATACACCATCCCGGCGTACCTCGTGGCGTAC
GCTACCCAGGCGCCGTTCTTCATCGCCCTCGCGGGGATCACGTACGCGAT
CATGTCCGCCAGCTGGGACGAGGAGGTGGGCTGA
back to top