mRNA_M-pyrifera_M_contig12634.5313.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12634.5313.1
Unique NamemRNA_M-pyrifera_M_contig12634.5313.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.310e-47
Identity = 149/245 (60.82%), Postives = 167/245 (68.16%), Query Frame = 1
Query:  460 WVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQ----------------GFGGMGQPFHRRYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDAGSAAAEAELEAAAAAGGEDGMMLDGASDVKAEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------EDEENAGNPPLATPSPSQKALLFSLLNALNISSHNQ 1077
            WVE VFSLV AVV VQHGAAAMT+CGLIPALLNVVQLNMDGQ                GFGGMG+PF RRYVV+QAVQ+METAV+NNAA L+ F++LGAAEVLASAFSTE+GRLRDAG+AAA  +  +    GG  GM++D     KAEG XXXXXXXXXXXXXXXXXXXXXX        XXXX                        +D  +A   PLA PSPSQKALLFSLLNAL+I+  NQ
Sbjct:   11 WVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQVGLRLCSDCVHMVKGTGFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAAAAGDNRSG---GGCSGMVVDDPKG-KAEGXXXXXXXXXXXXXXXXXXXXXXXDGKVKGTTXXXXXXXXXXXXXXATGGDPDGVQGGAEDDASSAAGGPLADPSPSQKALLFSLLNALSITFQNQ 251          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: D7G2U3_ECTSI (DUF913 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.220e-44
Identity = 88/105 (83.81%), Postives = 99/105 (94.29%), Query Frame = 1
Query:  457 KWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFGGMGQPFHRRYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDAGSA 771
            +WVE VFSLV AVV VQHGAAAMT+CGLIPALLNVVQLNMDGQGFGGMG+PF RRYVV+QAVQ+METAV+NNAA L+ F++LGAAEVLASAFSTE+GRLRDAG+A
Sbjct:    5 RWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQGFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAA 109          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: K0TQT1_THAOC (DUF913 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQT1_THAOC)

HSP 1 Score: 95.5 bits (236), Expect = 8.040e-18
Identity = 81/276 (29.35%), Postives = 121/276 (43.84%), Query Frame = 1
Query:    1 RDGDSNLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL--FIM---PE--QDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFGGMGQPFHR---RYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDAGSAAAEAELEAA 798
            RD    L L+AR  +V  ELG+ +GQY GLLP L+R+ +ASL  F++   PE   D                    G +  K+ E            + D  L LG+AF+ A   ++  R                                       ++V+++ +L +AV+ V  G A++TDCGLIPAL++ V L+     FGG G  +     RYV AQAV ++E A++ +   L+ F EL   +VL      EM R+R +     E +  AA
Sbjct:  162 RDPSGTLSLLARQNNVLAELGVGKGQYLGLLPALIRYSLASLNSFLLSGGPEGNDDNGEADAGRLKSEEGTDGNDDGGLALKSGEEEKKEET-----KRDVGLELGLAFLRATRPRSPPRGEAEEL-------------------------------ALEFVDSILTLTSAVISVPTGTASLTDCGLIPALVSTVALSGRPDPFGGTGSSYVGGLLRYVAAQAVTILEGAMVTHGNALSAFHELSGVDVLVKRIDVEMKRMRPSPPTGGETDAGAA 401          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A7S2VVZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVZ5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-13
Identity = 70/250 (28.00%), Postives = 116/250 (46.40%), Query Frame = 1
Query:    4 DGDSNLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEA----AGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFG----GMGQPFHRR---YVVAQAVQVMETAVLNNAAGLTTFKELGAAEVL 720
            +G   +  +ARH +V  ELG+ +GQY GLLP L+R  V +L                        K    +++K +   D           D  LSLG+AFV A    +GA TN+                 +     S  P +    ++  E  ++++AVF+L++ VV +   AAAMTDCGL+PALL +++ +    G          P HR    Y+ +Q +Q++E  ++N++  +T F +L  +++L
Sbjct:  295 EGGQGIPSLARHVNVMGELGVGKGQYMGLLPSLLRDCVTNL-----------------------SKEHTNIDTKKTTTSDIGIK-------DEDLSLGLAFVSATSSPSGAMTNS----------------SSSILDPSIPPRSKGVTSSPLEQLEFIDAVFTLISEVVSIPQTAAAMTDCGLVPALLTILESSPVLLGSPPASLSSSNPMHRTFMTYITSQTIQILEAVIVNHSNAMTAFNDLKGSDLL 498          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A448ZD07_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.880e-11
Identity = 66/257 (25.68%), Postives = 113/257 (43.97%), Query Frame = 1
Query:    7 GDSNLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDA-ALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFGGMGQPFHR----------RYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEM 744
            G+ +L   ARH+++  ELG+ +GQY GLLP L+R+ +ASL  +    +                     +ES  +    A S+     + DA A+ +G+AF+EA    T  R                                    +   ++++V +L +A+V    G +++T+CGL+PALLN V ++ +      M                R++ AQAVQ++E A++ ++  L+ F  L   EVL +  S E+
Sbjct:  480 GNGSLTGFARHSNILTELGVGKGQYLGLLPTLIRYSLASLGSLVSTPSCRD------------------IESNETM---ASSIEKS--KVDATAMDIGLAFIEATSTPTVPRFEQLE-------------------------------KALLFMDSVLTLTSAIVSTPSGTSSLTECGLVPALLNTVSIDAEVASMKIMPDSSSESEIFRIQSLLRFITAQAVQILEGAIVTHSNALSAFHNLKGVEVLTARLSKEV 682          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A7S2L793_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L793_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.080e-10
Identity = 65/264 (24.62%), Postives = 113/264 (42.80%), Query Frame = 1
Query:   16 NLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL--FIMPEQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNM-------DGQGFGGMGQPFHR---RYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDAGSA 771
            +  + AR  +V  ELG+ +GQY GLLP L+R  +A+L  F++ E                          ++ +E  D  +V       D  L LG+AF+ A       R+                   RQ                 ++++AV +L + V+ V  G +A+TDCG+IPAL++ + L+        +        + +     +++ AQA+Q++E A++ +   L+ F EL   +VL    S+E+  +R   SA
Sbjct:  261 SFNIAARQANVLSELGVGKGQYLGLLPTLIRFSLAALNSFLLQED------------------------VNRGTEGQDDTNVDNNGDGDDTGLELGLAFIRATKPPPLPRKI------------------RQE-------------RALEFIDAVLTLTSTVISVPSGTSALTDCGIIPALVSTIALDSQMTKNSNNSSSMEANEESYSNSLLKFITAQAIQILEGAIVTHTNALSAFHELKGVDVLVQRLSSEVENIRKNSSA 469          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A7S4VU13_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VU13_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.180e-9
Identity = 68/241 (28.22%), Postives = 104/241 (43.15%), Query Frame = 1
Query:    1 RDGDSNLGL--VARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLN----MDGQGFGGMGQPFHR--------------RYVVAQAVQVMETAV 663
            +DG +N GL  VAR  +V  ELG+ +GQY GLLP L+R+ +ASL     Q                  +GG   + K +   D  ++A         L +G+AF++A       R+                                      ++++AV +L +AVV V  G AA+TDCGLIPAL++ V L+       +G G  G PF                +++ AQA+Q++E A+
Sbjct:  311 KDG-ANGGLTNVARQANVLGELGVGKGQYLGLLPTLIRYSLASLNSFLSQGKG------------DHGRGGTGKDQKITMADDVMAIADDDDDM-LGLGVGLAFLQATKPPALPRKEQEE-------------------------------RALEFIDAVLTLTSAVVSVPSGTAALTDCGLIPALVSTVALDSHAAQKAEG-GRQGSPFAPPIANEEESYSDCLLKFISAQAIQILEGAI 505          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A7S2K3K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3K2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.490e-8
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  448 EVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFGGMGQPFH--------RRYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDA---GSAAAEAELEA 795
            +   ++E + SL  AVV V  G AAMTDCGLIPAL++V   +          QPF+        R+Y+ +QAVQ+++ A++ + +  T+F EL   + L      E+  ++ A   G  A E E +A
Sbjct:   43 QALDFIETMLSLTLAVVNVPSGTAAMTDCGLIPALVSVFSAS----------QPFYKNGHLDCQRKYIASQAVQILDAAIVAHTSAFTSFHELNGVDSLVKCLQDELEEIKQASGVGENAMEVEYQA 159          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 64.3 bits (155), Expect = 2.020e-7
Identity = 72/261 (27.59%), Postives = 103/261 (39.46%), Query Frame = 1
Query:    1 RDGDSN-LGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDG-------QGFGGMGQPFHR-----RYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEM 744
            RDG +  L   AR + V  ELGI +G Y GLLP L+R+ +ASL   P  ++ +                              P + P        L +GMAFVEA       R                                       ++V+ + +L + +V    G AA+TDCGLIPALL  V  ++D               Q   R     R+V+AQAVQ++E A++ +   LT F +L   EVL+   S E+
Sbjct:  450 RDGSTGALSGSARLSTVLAELGIGKGYYLGLLPTLLRYSLASLD-SPGHESIL------------------------------PEIEPEDLDDATMLDVGMAFVEATMEPLPPRIVQVE-------------------------------RTLEFVDNLLTLTSTIVSTPTGTAALTDCGLIPALLATVAHDLDRTIQRLLPDSSNCSTQEILRVYSLLRFVLAQAVQILEGAIVTHGNALTAFHDLRGVEVLSGRLSGEI 648          
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Match: A0A7S4IYT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYT2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.450e-7
Identity = 86/275 (31.27%), Postives = 130/275 (47.27%), Query Frame = 1
Query:   13 SNLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL--FIMP----EQDAAVXXXXXXXXXXXXXXKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGMAFVEAAGAQTNARRXXXXXXXXXXXXXXDTDAARQSGTPAAVSAAAAGGEVFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQ-----------GFGGMGQPFHRRY-------VVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGRLRDAG 765
            S++    + +    ELG+ +GQ+ GLLP LVR+ +ASL  F++     EQ ++ XXXXXX         G             A             +SLG+AFV+AA        XXXXXXXXXXX     +   ++                ++V+ V +L +AVV V  G +A+T+CGLIPAL+  V L+ + +           G GG  Q     Y       V AQAVQ++E A++ +   L+ F++LG  ++L     +E+  +R  G
Sbjct:  208 SSMYPALKQSATLAELGVGKGQFLGLLPALVRYSLASLNAFLLGRGSGEQGSSXXXXXXXTDAPMEEADGXXXXXXXXXXXXXA-----------LGMSLGLAFVDAALRPPXXXXXXXXXXXXXXXARTRAEEEERA---------------LEFVDVVLTLTSAVVSVPSGTSALTECGLIPALVGTVALDSNRRARLREESRSFTGEGGEAQWGRESYADVLLNFVTAQAVQILEGAIVTHGNALSAFRDLGGVDLLVRRLVSEIEDVRREG 456          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12634.5313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5LD86_9PHAE3.310e-4760.82DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G2U3_ECTSI1.220e-4483.81DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
K0TQT1_THAOC8.040e-1829.35DUF913 domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S2VVZ5_9STRA1.700e-1328.00Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A448ZD07_9STRA8.880e-1125.68HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-... [more]
A0A7S2L793_9STRA1.080e-1024.62Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4VU13_9STRA5.180e-928.22Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2K3K2_9STRA4.490e-833.86Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B7G082_PHATC2.020e-727.59HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S4IYT2_9STRA2.450e-731.27Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12634contigM-pyrifera_M_contig12634:327..7852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue9e-41
Seed eggNOG ortholog2880.D7G2U3
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
Exons7
Model size1077
Cds size1077
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.991707-CDS-M-pyrifera_M_contig12634:326..5451622815777.991707-CDS-M-pyrifera_M_contig12634:326..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 327..545 -
1692277564.8640492-CDS-M-pyrifera_M_contig12634:326..5451692277564.8640492-CDS-M-pyrifera_M_contig12634:326..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 327..545 -
1622815778.0072796-CDS-M-pyrifera_M_contig12634:2989..31331622815778.0072796-CDS-M-pyrifera_M_contig12634:2989..3133Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 2990..3133 -
1692277564.8832629-CDS-M-pyrifera_M_contig12634:2989..31331692277564.8832629-CDS-M-pyrifera_M_contig12634:2989..3133Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 2990..3133 -
1622815778.018839-CDS-M-pyrifera_M_contig12634:3776..39051622815778.018839-CDS-M-pyrifera_M_contig12634:3776..3905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 3777..3905 -
1692277564.8924677-CDS-M-pyrifera_M_contig12634:3776..39051692277564.8924677-CDS-M-pyrifera_M_contig12634:3776..3905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 3777..3905 -
1622815778.0339627-CDS-M-pyrifera_M_contig12634:4671..47981622815778.0339627-CDS-M-pyrifera_M_contig12634:4671..4798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 4672..4798 -
1692277564.9014049-CDS-M-pyrifera_M_contig12634:4671..47981692277564.9014049-CDS-M-pyrifera_M_contig12634:4671..4798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 4672..4798 -
1622815778.0474117-CDS-M-pyrifera_M_contig12634:6087..63261622815778.0474117-CDS-M-pyrifera_M_contig12634:6087..6326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 6088..6326 -
1692277564.9103243-CDS-M-pyrifera_M_contig12634:6087..63261692277564.9103243-CDS-M-pyrifera_M_contig12634:6087..6326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 6088..6326 -
1622815778.0651484-CDS-M-pyrifera_M_contig12634:7597..76451622815778.0651484-CDS-M-pyrifera_M_contig12634:7597..7645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 7598..7645 -
1692277564.925513-CDS-M-pyrifera_M_contig12634:7597..76451692277564.925513-CDS-M-pyrifera_M_contig12634:7597..7645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 7598..7645 -
1622815778.077796-CDS-M-pyrifera_M_contig12634:7681..78521622815778.077796-CDS-M-pyrifera_M_contig12634:7681..7852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 7682..7852 -
1692277564.9406323-CDS-M-pyrifera_M_contig12634:7681..78521692277564.9406323-CDS-M-pyrifera_M_contig12634:7681..7852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12634 7682..7852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12634.5313.1prot_M-pyrifera_M_contig12634.5313.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12634 327..7852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12634.5313.1

>prot_M-pyrifera_M_contig12634.5313.1 ID=prot_M-pyrifera_M_contig12634.5313.1|Name=mRNA_M-pyrifera_M_contig12634.5313.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=359bp
RDGDSNLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDA
AVAAAAAAGGEGGGPDKGGGWVESKASEPGDAPSVAPPPPRPDAALSLGM
AFVEAAGAQTNARRGGGGGGSSGAGASGDTDAARQSGTPAAVSAAAAGGE
VFKWVEAVFSLVAAVVGVQHGAAAMTDCGLIPALLNVVQLNMDGQGFGGM
GQPFHRRYVVAQAVQVMETAVLNNAAGLTTFKELGAAEVLASAFSTEMGR
LRDAGSAAAEAELEAAAAAGGEDGMMLDGASDVKAEGKGKGKKPSAKTKG
KGKGRDKRADSAASKSSASGDGGEDEENAGNPPLATPSPSQKALLFSLLN
ALNISSHNQ
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mRNA from alignment at M-pyrifera_M_contig12634:327..7852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12634.5313.1 ID=mRNA_M-pyrifera_M_contig12634.5313.1|Name=mRNA_M-pyrifera_M_contig12634.5313.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7526bp|location=Sequence derived from alignment at M-pyrifera_M_contig12634:327..7852- (Macrocystis pyrifera P11B4 male)
AGGGACGGAGACTCGAACCTGGGCCTGGTGGCTCGACACACGCATGTCTT TCAGGAGCTAGGCATCACTCGTGGCCAGTACACAGGGCTTCTCCCCCTTC TCGTGCGGCATGGGGTGGCCTCCCTGTTTATCATGCCGGAGCAAGATGCC GCTGTCGCCGCCGCTGCTGCTGTTGCTGCTGCCGCCGCTGTCGCATCGGA GGCAGAGGCGGGCGGCGAGGGAGGGGGACCGGACAAAGGCGGTGGTTGGG TAGAGGTGAGTCTATCGACTTTCTTGTGTGTTGGGTAGCTTTTACAACTC CTGAGTTTTTCGGGTCTCATTCCGAGCGTTTTTGTGCCCAAGCCGGGAGA GCGGTGGCAAGAGGGTTAGTTGTCCCTTTTCGGCTGCAGTCCCGCTTTGG GGACTAAACGCTCACATTCTAAGTAGTTTGTCCGTAAAACGGGAGTGCAG TCCTAAAACGATAAAACAACTTGTATTGCTGCACACATTTTCGGCACCAT TTCCGAGTACTTCCCCAAAAGCGTCGGTGCAGTTCTGGAAGGGTGGCAAA GATGCGTTTTTAACCGTTGTTTCTGCCCAAGGATAGTAGTATTACGGGGG TCTATAGTTGATGGGACCAAATTTTGTTAGTAAAAAGAGGAAAATATATT GTGTTTTATGTATTCCATAGGTCCTATTAACTATGGACCCCGGTAATAGT GCACCCAACGTCCGTCCTGATTCTTCATCCTCTTGGTAGAGAAGAGATGC GACAAAATTCTGTGGTCACAGACGTTTTGAGACAATAGACAAGGCGAGAT AATTGCAAATTGATCGGGGTGAGCAAACGAAATGAACGCCAACGTACAAG GGTACGAAAACACCACGACACGAGAGCCAATACAAGGAAGTAGGAATTCC CTAAAAAAAACGAATCTGAACCTAATGGTATGCTGTATTGAAAAAGAATG CGAATGACGCAAGAAAATCAACATAATCGCCATGCAAGGATCGCCTAGGG AAACCAGGACCGCGAGAGAGAGGGATCTCCACCGACATCGCTCGCGTGCT CAACTCTTTCCAACTAAACCGTCCCGTGTTTGTCGGGTTTTTTTCCCCCA TGTCCGTGTTCCTGTATTTGTCACGTGCTTGTCCCGTGTTGGTTCTTCGT TTGCCCCGCGGTTGTCGCTTTTTCGTCCTGTGTCGTGTTTCTGTCCCCCT GGGTGTCATATTATCCGTTCCCCTTTTTCCCGGTGTTCGTCGTCCGTTCG TTCCGTGTGCGTCGTGTAATTGATCCTTGTTGCCACCGTTTGCTTGTTCC GTGTTTTGTCCCATGGTTGTCCCGTGTCTATCTTCCATATTTATACCGTA TTCATCCCGTGTTTGTCCCGTGGTCGACCCGTCCCGTGTTTCGTATTTTT TTCCGTGTTTGTCGCTGGTCGTCCCGCGTTTGTCCTGTGCTTAACTTGTC CTGTATTTATCTCTGTCTATTTGTCCCCTATGTGTCCGGGTGCGGCGTCG GCGTCGGTCCTCTCTTGGTGACTTAGTCGAAGGCGTCAGAACCCGGGGAT GCCCCTTCTGTAGCCCCGCCCCCGCCTCGCCCGGACGCCGCTCTGTCTCT CGGGATGGCCTTTGTTGAGGCCGCCGGAGCCCAGACGAATGCGCGACGGG GCGGAGGTGGCGGTGGGAGCAGCGGTGCTGGTGCTAGCGGTGACACTGAC GCCGCGCGGCAGTCTGGAACTCCCGCGGCGGTGTCGGCGGCGGCCGCTGG GGGCGAGGTTTTCAAGTCGGAAGCGCCGTCAGCGGGGGCGCGGGGGGGGG TCGAGCACGGGATCCTATCGGAAATGGATCAGATTAGGTGAGCGAAAAAG AACGGCTTCTAAAGTAAGGCCTTCTGCGTGCCGCCTGCCACGTGGTGTTG GCTCTGGTATTGATTCGTGTGGTGGCCGGCACGGTGGGTGGATGGCTGGG TGGGTGAGCGGGTCGATTGCCAGATTTCTTTGCCACGTTTGCGGGCTCGC TCCTTTGTACGGCGCGTGTGCCCTTTCTTTGGGTGTTTACTGTTCGTTGG TGCGTGTGGCTGCCGCTCGCCGTGACTGCTGCGCGCTGGCTGCTGCGCGT TAGCTGCTGCGCGTTAGCTGTTTTGAGGTTCGTACGGTACGCGCTGCATG CTAGCTGGGTGTGAGCTAGCTGTCGTGTGCTGGCTATTGCGCGATGCCGT GCGCTTGTGCTGGCTGCTGTTGCGAGCTGGTTTCTGTGCTCTTTTTTATC ATTCCCCACTCACGCAGTGGCCGATGCTGTAATCCGTCACATTGTATCGT AATTTTTTATTTCTAAAGTCCCCAGAGGGATTAATCTGAGTGATGGCGGG GGTTGTAGGGATTGGCTTAGGGTTAACCTTTTTTGGAACTGCAGTCCCGG TTTGGGGACGAACCACTTGAACTCTTAAGCAGTTTGTCTCCTAAACGGGA CTGCATGCAGTCCTAGAAGAGGTAAGGTTGGGTCGGTGCCTTCTCTCGTA GTTTGTAAAACAACAAAATCCCAATCATAAACACAAAACCCCCTCACAAA TCAAATCACTCATAGTTTTAGGTGTTTTTTTTCTGGCATGTTACTTGTGT CGCGACTGATAAAAGCGACCAACACTTACCTCCGATATAACTCGGAGCGA TTCTGATCCCCTTTCTTGCACTCGTATGATGCCGGTACTTGGAGGGGGGA GGGGGTCAGGTGCGGATGGCATCGCATCGAGCGGGGGAACGTAAAAGCGA TATGTCTAAAATCGGTTGGCACGTTGGATGGATCAGGATCGAGATCATCT AGATCGTCTGAATCCTAAGCTGTCGTTGTGAGATGTTGTGCAAGATATGT GCAAGTACAGATCCAACCCTGAACATATGTCCTAGATGATGCAGAGCATA CGACTCCCACCCTAAAACAACACGCGCTGTAGGTCATGCACGTCAGGAAC CTACCTGCTCCGAAAAATCTACTGTAGATCATGAAGCGTGGGTGTCCCGT CAGATGATCTACCTGAGGTGTGGAAGATTGAGACCGTCATTGCTTGCCGC GCAGGTGGGTGGAGGCGGTATTCAGCCTGGTGGCGGCGGTGGTGGGTGTG CAGCACGGTGCGGCGGCCATGACCGATTGCGGCCTTATCCCGGCGCTCCT GAATGTGGTGCAGCTCAACATGGATGGTCAGGTAGGAGGCGACCGAGAGA ACAAGGGCACCATATATAAGGCTGACGCTCTCTTTCTCTTTTCGAGAATC GGATTGGTGTGGATTGTAATGGTTTGGTGTGGTTTTGGTGTGGATTGTGG AGGGTTGGTTGGCTGTGGTTCGGTGTTGGTGTTGGTGTTGGTTGACTTTT TCCGCCATGGTTTGCGGCGGTGTGGATTTGTGTGGATCGGATTGGTCAGC TGTGGTTTCGTTTGGTTTTTGTCTCCTGGATTGGATTGGTCCGCTCTGGT TGCGTTTGGTTTTTTTTTGCTATGGTTCGCTGTGGAGTCGTGCGGATTGG TTAGCTGTGGTTGAGTTTGATTTGCTTTGTTTTTATCTGCCATGGTTTGC GTTGGTTTGCTGTGGTTTCTTGTGATTTTCGGATTAGTTAGCTGTGGTTT GCAGTGATTCACTGTGCTTGGCTATGGTTCTGTGTGATTCGCCCTGGTGT GATGTGTTTTTCTTTGCTTAGCTTTGCCCTGCCCTGCCTTGCGTGTAGGA CGTTGGTTTCTGCGTATGTAGTAATGTTCTTTCAGTGCCTTGTATGTTGA CGTTCTTGCATATTGCTGCTCATGCTCAACTTTTTTTTGACTATGGCAAA ATTTATCCCACCCCGATTCCAAGTAGTTTGTCCCGTAAAACGCTGGTGCA TGCAGCAACTCTAAAAAGGTTTATCGCGTTTTCGTGCTCCTCCTTTTTTC TTGCTCGTATTCCCCTGCTCGCTTTTTTTTTTGCCGGCGTTGCGCAGGGA TTCGGAGGCATGGGCCAGCCGTTTCACCGTCGGTATGTGGTGGCCCAGGC GGTGCAAGTGATGGAAACCGCCGTGCTCAACAACGCTGCCGGGCTCACGA CATTCAAGGAGCTTGGCGCGGCTGAGGTGGGGAGTTGCTGCTGGTGTTGT TGCTCTGTTGTGCATGAGCAGCAAGCAGCGCCTCGAGTTTGGGGTTTGAG TGCGGGGTTGGTCATGGTTGTTCTATCGGTTTATTTTGTGGTGGTTTTGT GTAGTGTGGTAACGAGTTGTTTGTATTTCGTCAATGTTTGTGTTTTGTGT TTGTACGTTCGTTTGTGTGTGCTTTGTGTGTTTACGTTAGTCGTTGTGCG CTTTGTCTGCGTTTGTGTGTGTGTTCGTTTGTATGCTCAGTCTGTTTTGT GTCTTTGTGTGCTCGTTGTGTGTATCTGCGCTTGTGTGTGCGTGTTTGTT AGTTTTGTGCTGTTGCGTGCGTTTGTGTGCGTTTCGTGTTATTATGTTCC TTTTAGTGTGCTTTACCGCTGCATCGTTCTGCGTGTACCGTACTGTGTTA CCGTACCGTATCGTAGAGACTGCACTGCACCGCGCTCTTTCTTACTGTAC TGCTGTAGACTGTTAATACTTGTTGTACACCTGTTGTACACTTACTGTTG TCTATTTTTCTGTATGCATCGGACCTGTATGCATCGGATCTGTATTAGCG TTGTCAAGATGTCTGTACTGTGGGTATGTTGCCGGTGGTTGGCCCTGCCT CTGTCTCGTGCGTCCAAAGGTGCTCGCGTCCGCGTTTTCTACTGAGATGG GGAGGCTTCGCGATGCGGGCTCCGCAGCGGCGGAGGCGGAACTGGAGGCG GCTGCGGCAGCAGGCGGCGAGGATGGCATGATGTTGGACGGTGCCTCAGA CGTAAAGGCGGAGGTGAGAGTGTGTTTTCGCCCGCGTGCGGCTGTGTCCA GACGCGTCGTATTGGTGTTGGTGGTGGTGCTTCGTGGCGGTGAAGGTTGC GTTTTCGTGTGGGTTATGGCGTTACTGGCGGTGGTGGTCTCGTGGTGCTG GCGGCTGTGTTTCCACGTGACGGGTGGTGTTGGTGGCAATGGTGTACAAA AGTTGGCGGCAATGGTGCGTGGTGGTGGTGGTGGAGGTTGTGTTTTCATG TGGGGGCTGGTCTTCGTATTGGTGGTTTGGGGTGGAACAGGCTGTGTTCT CAGTGTTGGGGGGTGGTGTCGGTGTTGGTGTTTGGCGTTGGTGGGTGTTT TATGGTGGCGGAGGCGGTACATTCATGTGGGGAGTCGTGTTGGGTGGTGT TGGTGGTTTTGGGGTGGTGGAAGCTGTGTTTTTCAGGCGAGGGGTGGTGT TGGTGTTGTTGTCGGTTTGCGGTGGTGTTTGTATGTGGTATTTTATTGTA AGAGGTACTGTAGTGCTGGTGGTGGGTTGTGGTGATGGGGTTGTGTTTTC GTGTGACGGGGGTGGTGTTGGTGTCGTTGGTAGTTTTGTAGTGGTGGCGG CTGTGTTTCCACGTGAGGGGTAGTGTTGGTGGTGGTTTGTTGCCCAAAGG TGCTTGAATAAAGGAGACCATTCTCTTTGAGCGCCACAAGACCTCGTTTG GTCTTATTATGCTGTTTGAAGTGTACGGGGGCGGTCAGTGAAGGGGTCAA ACCGCGGTCTCTTATGTACCACTCTGACCGAATATATAAGCACCGTTTGA TGTTGACACCAGAGTCCAGACGGTGTGTTTTTTTCCGTCCAGAATGGATA CAGCGTCTCTGGTTGTGGTTGCGGTTGTTGTGTCGTTTTTGTTGTTGATG TGCAGTGTGTTTTTCGCACCCCTTTGCGGTGAAGCAAAGAGACTTTGCCG TTTCGTTCCATCGAAAGCGCACAAATTGACATTGTCTGCATGTACGTAAG TTTTTAGTCTTTCATGTGCTGGTGTGTTCTATGTGCGCCTGTGTGCCTGC GTGTTTGTAGATGGTGGTTTGTTGGTACTATTATTTTGCCGTTTTTTTAT TATTGTCGAACAAGTATTTGATACTGCTGTACGAATTCCATACGATATCG GCGAAACTACGACGCGGGCAGTCATGCTTTTTTTTTTATTATCCTCCGGC GGATTAGTAAAAATATACCTTAAGCAATTGTAGGGTAACAACAGCCTGTT CTAATGTTGCAACGGGAGCTATGGGCTAAATTGACACGACACGAAATTGG AACGTGGAAGTGTGGCGAGCTTAAGCTTTATTTTTATCAATCCGCCGGAG GATAAAAAAACAAACAAACAAACGCTCCAGGACATGTGCTCTCGAATAAG CGTGGTTTCACTCCAAATGACCCAAGACAGCGCGTAAGACGTACGTGCAC AGATTGAGTAGTGTATTAAAAAAAAGGTGGAAAATCATACCGGGTACAAT TTTTCGAATTCAGCCCCGTTTTCAAAAATGCAACTTTCATGAAACACCCG ACAACGAGGGCAAAATTGCACAAATAACCCGAAGAATTGCGATCAACGAT GTGCTGCTCGAGCTACGCCTGCTTGAAGAGAGGCACCTCGGTTGACTGCC GCCTACTTCACCTGCAGACGTGTCGCACACCGGCTGAACGGCACGGCTCA CATTTTGTTCGTTTGGGTTCTTGTTTGTTCGAATAGGGCACGAACTGGGT GTTGGGTGGACCGCCTTTTGTAGCGAGTCGAAAAGCGAAACAATCCTTCG TTTTTACGTACATTTTTTTTTGTTTTTCTAACAATCAGGTTTATAACACT CCTTTTTGCTGCTGTTGTTTTGGTCCAACTCGGGGCGGAAACATACATTT AGTGTTACCACTTGAAAGTGTCTTATCCATACCCTTCATTCAAGCTATCC AAAATCGCCAAGTTCGCAAAGCTGCGTGGTTTATGCCCGACTACTATTAA TTAAAACGGATCACCCTCCGTAGCTTGTCTAGACGATGTGCGTATATACC CGGTGCGACTGTTTTGTAGTTATTTATTTACGTGTGTTGTGTCTGTGTGA TGGTCTTAGATCAGCTCATTTACCTGAAGTATAGCCCCCGTAGTCACAAA AACTGGCCGAACGAAAAAGCGCCTCCGTGGAGGAAAACTAACAAGTACCA AGGACCAGGTGTACAGTAGCTGTATCAGTCTGTGTAGGCCTGCGGGTTTC TGTTTTGTCTGCATGGCTGCGTGTGCATGTATACAGCGAGGCCGTGTATA TACCCTGGCGCCCACCCCCGCTTGGTCGGTGAAAACCGGACGTGCTCCGT CCTGGCAATTGTAGGGATGCGAGGATCTATGGTCATACACGACTCCGGCC ATGCATGACGTGATACACCCCCCCCCCTCCCACTCTAACGCCTCCGAATC GGAGCAGGGCAAAGGAAAAGGCAAGAAGCCTTCCGCTAAGACGAAGGGTA AAGGCAAGGGACGAGACAAGAGGGCCGACAGCGCGGCCAGCAAATCCTCT GCTTCCGGTGATGGCGGAGAAGACGAGGAGAATGCGGGCAACCCGCCCTT GGCCACCCCGTCGCCATCCCAGAAGGCCCTTTTGTTTTCTCTTCTGAACG CGCTTAATATATCCTCCCATAATCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12634:327..7852-

>mRNA_M-pyrifera_M_contig12634.5313.1 ID=mRNA_M-pyrifera_M_contig12634.5313.1|Name=mRNA_M-pyrifera_M_contig12634.5313.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2154bp|location=Sequence derived from alignment at M-pyrifera_M_contig12634:327..7852- (Macrocystis pyrifera P11B4 male)
AGGGACGGAGACTCGAACCTGGGCCTGGTGGCTCGACACACGCATGTCTT
TCAGGAGCTAGGCATCACTCGTGGCCAGTACACAGGGCTTCTCCCCCTTC
TCGTGCGGCATGGGGTGGCCTCCCTGTTTATCATGCCGGAGCAAGATGCC
GCTGTCGCCGCCGCTGCTGCTAGGGACGGAGACTCGAACCTGGGCCTGGT
GGCTCGACACACGCATGTCTTTCAGGAGCTAGGCATCACTCGTGGCCAGT
ACACAGGGCTTCTCCCCCTTCTCGTGCGGCATGGGGTGGCCTCCCTGTTT
ATCATGCCGGAGCAAGATGCCGCTGTCGCCGCCGCTGCTGCTGCGGGCGG
CGAGGGAGGGGGACCGGACAAAGGCGGTGGTTGGGTAGAGGCGGGCGGCG
AGGGAGGGGGACCGGACAAAGGCGGTGGTTGGGTAGAGTCGAAGGCGTCA
GAACCCGGGGATGCCCCTTCTGTAGCCCCGCCCCCGCCTCGCCCGGACGC
CGCTCTGTCTCTCGGGATGGCCTTTGTTGAGGCCGCCGGAGCCCAGACGA
ATGCGCGACGGGGCGGAGGTGGCGGTGGGAGCAGCGGTGCTGGTGCTAGC
GGTGACACTGACGCCGCGCGGCAGTCTGGAACTCCCGCGGCGGTGTCGGC
GGCGGCCGCTGGGGGCGAGGTTTTCAATCGAAGGCGTCAGAACCCGGGGA
TGCCCCTTCTGTAGCCCCGCCCCCGCCTCGCCCGGACGCCGCTCTGTCTC
TCGGGATGGCCTTTGTTGAGGCCGCCGGAGCCCAGACGAATGCGCGACGG
GGCGGAGGTGGCGGTGGGAGCAGCGGTGCTGGTGCTAGCGGTGACACTGA
CGCCGCGCGGCAGTCTGGAACTCCCGCGGCGGTGTCGGCGGCGGCCGCTG
GGGGCGAGGTTTTCAAGTGGGTGGAGGCGGTATTCAGCCTGGTGGCGGCG
GTGGTGGGTGTGCAGCACGGTGCGGCGGCCATGACCGATTGCGGCCTTAT
CCCGGCGCTCCTGAATGTGGTGCAGCTCAACATGGATGGTCAGGTGGGTG
GAGGCGGTATTCAGCCTGGTGGCGGCGGTGGTGGGTGTGCAGCACGGTGC
GGCGGCCATGACCGATTGCGGCCTTATCCCGGCGCTCCTGAATGTGGTGC
AGCTCAACATGGATGGTCAGGGATTCGGAGGCATGGGCCAGCCGTTTCAC
CGTCGGTATGTGGTGGCCCAGGCGGTGCAAGTGATGGAAACCGCCGTGCT
CAACAACGCTGCCGGGCTCACGACATTCAAGGAGCTTGGCGCGGCTGAGG
GATTCGGAGGCATGGGCCAGCCGTTTCACCGTCGGTATGTGGTGGCCCAG
GCGGTGCAAGTGATGGAAACCGCCGTGCTCAACAACGCTGCCGGGCTCAC
GACATTCAAGGAGCTTGGCGCGGCTGAGGTGCTCGCGTCCGCGTTTTCTA
CTGAGATGGGGAGGCTTCGCGATGCGGGCTCCGCAGCGGCGGAGGCGGAA
CTGGAGGCGGCTGCGGCAGCAGGCGGCGAGGATGGCATGATGTTGGACGG
TGCCTCAGACGTAAAGGCGGAGGTGCTCGCGTCCGCGTTTTCTACTGAGA
TGGGGAGGCTTCGCGATGCGGGCTCCGCAGCGGCGGAGGCGGAACTGGAG
GCGGCTGCGGCAGCAGGCGGCGAGGATGGCATGATGTTGGACGGTGCCTC
AGACGTAAAGGCGGAGGGCAAAGGAAAAGGCAAGAAGCCTTCCGCTAAGA
CGAAGGGTAAAGGCAAGGGACGAGACAAGAGGGCCGACAGCGCGGCCAGC
AAATCCTCTGCTTCCGGTGATGGCGGAGAAGACGAGGAGAATGCGGGCAA
CCCGCCCTTGGCCACCCCGTCGCCATCCCAGAAGGCCCTTTTGTTTTCTC
TTCTGAACGCGCTTAATATATCCTCCCATAATCAGGGCAAAGGAAAAGGC
AAGAAGCCTTCCGCTAAGACGAAGGGTAAAGGCAAGGGACGAGACAAGAG
GGCCGACAGCGCGGCCAGCAAATCCTCTGCTTCCGGTGATGGCGGAGAAG
ACGAGGAGAATGCGGGCAACCCGCCCTTGGCCACCCCGTCGCCATCCCAG
AAGGCCCTTTTGTTTTCTCTTCTGAACGCGCTTAATATATCCTCCCATAA
TCAG
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