mRNA_M-pyrifera_M_contig1263.5310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1263.5310.1
Unique NamemRNA_M-pyrifera_M_contig1263.5310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 8.120e-44
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            ADDGKLGTKLYHAVN+V+L GVPA +ATSPSALTMPLD+VLG+A+PLHAHIGMNYVISDYVPK  RG ARGAMLAAS++A LGLLK+
Sbjct:   42 ADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKL 128
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.620e-23
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD G +GTK YH  N  +L   P  +  SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP+  R  AR  +L A+ V  LGLLK+
Sbjct:   56 ADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKL 142
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-19
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPF----RGQARGAMLAASIVAALGL 252
            AD+G + TKLYH +N+ +L   P      PS +T PLD+ LG+ +PLH HIGMNYVI+DYVPK F    RG AR  ML  + V   GL
Sbjct:   35 ADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGL 122
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-18
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD GKLGT ++H +N  +L  +P V+  +P+ +  P++++L +A PLHAH+ MNYVISDYVP+  +  AR AML  + VA+LGL+K+
Sbjct:   40 ADVGKLGTSMFHYLNYGLLAALP-VLLVAPTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKL 125
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A3M6VF14_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF14_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-18
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD+  L TKL H  N+ ++  VP     SPS L +P+D+ +G+ LP+HAHIGMN VISDYVPK  R  AR   L A+ +  LGLL+V
Sbjct:   55 ADNHVLSTKLMHLTNVSLMIAVPLAFVLSPSPLVLPVDLAVGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRV 141
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A662YC78_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YC78_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.970e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD+    TKL H  ++ ++  VP     SPS L MP+D+ LG  LP+HAHIGMN VISDYVPK  R  AR + L  + V  LGLL+V
Sbjct:   65 ADNATFSTKLQHLSSMGLMALVPVAFVLSPSPLAMPVDLALGAILPIHAHIGMNNVISDYVPKRMRTLARVSWLGVTAVMFLGLLRV 151
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BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.420e-18
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD      KL+H  NL ++   P  I   PS L+MP+DV L +  PLHAH+GMN + +DYVP    G AR A+LA S+++ +GLLK+
Sbjct:   42 ADQTLSQAKLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKL 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: A0A225WU41_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WU41_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.110e-18
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD+ KL  KL H  ++ ++  VP     SPS L +P+D+ +G+ LP+HAHIGMN VISDYVPK  R   R   L A+ +  LGLL+V
Sbjct:   46 ADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRV 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: D0NIT5_PHYIT (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=11 Tax=Phytophthora TaxID=4783 RepID=D0NIT5_PHYIT)

HSP 1 Score: 82.4 bits (202), Expect = 5.880e-18
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV 261
            AD+  L  KL H  ++ ++  VP     SPS L +P+D+ LGL LP+HAHIGMN VISDYVPK  R  AR   L A+ +  LGLL+V
Sbjct:   51 ADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRV 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.890e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAHIGMNYVISDYVPKPFRGQARGAMLAASIVAALGLL 255
            AD+ K  +K+ H  +  +L  VPA +  SPSAL +P+D +L + +P+H+HIG+N V+SDYVPK F+  AR  +L ASIV  LGL+
Sbjct:   44 ADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLI 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1263.5310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI8.120e-4482.76Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA6.620e-2352.87Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S2WU59_9STRA2.200e-1951.14Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA1.160e-1848.28Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A3M6VF14_9STRA1.620e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A662YC78_9STRA3.970e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA4.420e-1845.98Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A225WU41_9STRA5.110e-1848.28Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
D0NIT5_PHYIT5.880e-1850.57Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W4GD77_9STRA6.890e-1848.24Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1263contigM-pyrifera_M_contig1263:15642..16789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D7FTY7
KEGG rclassRC00045
KEGG koko:K00237
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.CybS, succinate dehydrogenase cytochrome B small subunit
EggNOG OGs2E21K@1,2S9AK@2759
Ec32 ortholog descriptionSDH4, succinate dehydrogenase subunit 4
Ec32 orthologEc-07_002870.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.8190525-CDS-M-pyrifera_M_contig1263:15641..157361622815777.8190525-CDS-M-pyrifera_M_contig1263:15641..15736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1263 15642..15736 -
1692277564.7665315-CDS-M-pyrifera_M_contig1263:15641..157361692277564.7665315-CDS-M-pyrifera_M_contig1263:15641..15736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1263 15642..15736 -
1622815777.8290002-CDS-M-pyrifera_M_contig1263:16623..167891622815777.8290002-CDS-M-pyrifera_M_contig1263:16623..16789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1263 16624..16789 -
1692277564.782153-CDS-M-pyrifera_M_contig1263:16623..167891692277564.782153-CDS-M-pyrifera_M_contig1263:16623..16789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1263 16624..16789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1263.5310.1prot_M-pyrifera_M_contig1263.5310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1263 15642..16789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1263.5310.1

>prot_M-pyrifera_M_contig1263.5310.1 ID=prot_M-pyrifera_M_contig1263.5310.1|Name=mRNA_M-pyrifera_M_contig1263.5310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
ADDGKLGTKLYHAVNLVILTGVPAVIATSPSALTMPLDVVLGLALPLHAH
IGMNYVISDYVPKPFRGQARGAMLAASIVAALGLLKV
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mRNA from alignment at M-pyrifera_M_contig1263:15642..16789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1263.5310.1 ID=mRNA_M-pyrifera_M_contig1263.5310.1|Name=mRNA_M-pyrifera_M_contig1263.5310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1148bp|location=Sequence derived from alignment at M-pyrifera_M_contig1263:15642..16789- (Macrocystis pyrifera P11B4 male)
GCGGATGATGGCAAACTCGGCACGAAGCTGTACCATGCCGTAAACCTGGT
AATTTTAACGGGCGTACCTGCAGTGATCGCGACCAGCCCATCCGCCCTGA
CCATGCCTCTCGACGTCGTCCTGGGACTCGCGCTGCCACTCCACGCACAC
ATCGGGATGAACTACGGTAAGATACAGCTGGATTACTATCATGGTGTGAT
TTCTGTCTGATACACAGGTATACCCCAGGTAAGTCATACAGGAAAATCGC
TTCAACCTGTGCTCTTGCCGTATTCTCTGCTGGTATGGTGCTGTTGCAGC
AGTGTTGTTGTGTTGTGGTGGTGCATTGTCGTCCTTTTCTTTTATTGTGG
GCCCTACCCTTATCCTTCCCTTATTCCCTTGACACCATGTTTGAAACGAC
CCACTGTCCCATTGCTGTCATATCGTGATGTTGTGACCTGTTGTGTTTTA
CTCGATTTTGCATTCACCCACTACTAATTCGAAGTGTATCTTGAGTATAG
CGCGATAGCAAATGTCTCGTTGCTGTCGAAGCCAGTAAAGTAGGCAAACG
GTAGGCACAAAAACTGAGGTTGGTCTAGACTGCATTGGACTGTTTGGACT
GATAATATAGTATACATGCAACGCACAAGACGTTTTTTTCGTTGGCGTCT
GCCCTTTCAACAGCGTTATCACTACTATACAGTACTGTACTGTACATCAG
TACCAATCTTGTCCGCTTGTAGTTTGATTGCCTGTGCCCGATCAAGAGAA
CGATTCCGGTCCTGTTGATATGTTCAAATTAATATATTCACAGATACCAA
TCGAACTGACGCAGCGTTGTACGTACTCTATTAGTGTATCTTCTGTGTAG
TAGAGGTAATAAGTACATGCAAACGGTGGTATCGCGCTTGTTGGTCCTTC
GCTGCTGTCCGTTCCACCAAGATCCATGATCCGTGTCTATGCTATTAATA
GTGCAAGCCAGTTCCAGTAAAATGTACTGATATCAACAATGGTGCCACGA
AAGGAATGACACATGAGACACTTGCCTCTTTCCCTCCATGCGCGAACTAC
CAGTAATCAGCGACTACGTACCGAAGCCGTTTCGGGGGCAAGCGAGAGGC
GCCATGCTTGCAGCGTCTATAGTGGCGGCCCTTGGACTTCTCAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1263:15642..16789-

>mRNA_M-pyrifera_M_contig1263.5310.1 ID=mRNA_M-pyrifera_M_contig1263.5310.1|Name=mRNA_M-pyrifera_M_contig1263.5310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig1263:15642..16789- (Macrocystis pyrifera P11B4 male)
GCGGATGATGGCAAACTCGGCACGAAGCTGTACCATGCCGTAAACCTGGT
AATTTTAACGGGCGTACCTGCAGTGATCGCGACCAGCCCATCCGCCCTGA
CCATGCCTCTCGACGTCGTCCTGGGACTCGCGCTGCCACTCCACGCACAC
ATCGGGATGAACTACGGCGGATGATGGCAAACTCGGCACGAAGCTGTACC
ATGCCGTAAACCTGGTAATTTTAACGGGCGTACCTGCAGTGATCGCGACC
AGCCCATCCGCCCTGACCATGCCTCTCGACGTCGTCCTGGGACTCGCGCT
GCCACTCCACGCACACATCGGGATGAACTACGTAATCAGCGACTACGTAC
CGAAGCCGTTTCGGGGGCAAGCGAGAGGCGCCATGCTTGCAGCGTCTATA
GTGGCGGCCCTTGGACTTCTCAAGGTGTAATCAGCGACTACGTACCGAAG
CCGTTTCGGGGGCAAGCGAGAGGCGCCATGCTTGCAGCGTCTATAGTGGC
GGCCCTTGGACTTCTCAAGGTG
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