mRNA_M-pyrifera_M_contig126284.5306.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126284.5306.1
Unique NamemRNA_M-pyrifera_M_contig126284.5306.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126284.5306.1 vs. uniprot
Match: A0A3M1IBW6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3M1IBW6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 9.890e-9
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    4 GTITLREGGAFASTMEYSNASGRSMNRTFAGTYTTDGEEYILTWQGAGRTKATIEDSTFTMNNEGMFFVYKK 219
            GT+ L+  G    T  +   +G  + R   G YT  G  + + WQ AG T ATI+  TFT++NEG+ F Y+K
Sbjct:   43 GTLNLQPDGTCRVTTVFVPPNGAEIVREVQGEYTLQGHTFTIRWQNAGTTSATIKGRTFTLDNEGLLFTYRK 114
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BLAST of mRNA_M-pyrifera_M_contig126284.5306.1 vs. uniprot
Match: A0A2E6D9Z1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D9Z1_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-8
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    4 GTITLREGGAFASTMEYSNASGRSMNRTFAGTYTTDGEEYILTWQGAGRTKATIEDSTFTMNNEGMFFVYK 216
            G  T+   GA +S + +   SG+ + R    TYT +G    + W+GAG+T  +I+  TFTM+NEG+ FVY+
Sbjct:    4 GAFTIDADGACSSKVIFVVPSGQEVTREVNATYTREGSVLRMQWEGAGKTVGSIDRGTFTMDNEGLTFVYE 74
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BLAST of mRNA_M-pyrifera_M_contig126284.5306.1 vs. uniprot
Match: A0A847G8T0_9BACT (DUF1579 domain-containing protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847G8T0_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-7
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    4 GTITLREGGAFASTMEYSNAS---GRSMNRTFAGTYTTDGEEYILTWQGAGRTKATIEDSTFTMNNEGMFFVYKK 219
            G++T+   G F+  ++++N +     + N+T  GTYT +G+   +   GAG T+ATI   TFTM+NEG+ FVY+K
Sbjct:  397 GSMTINSDGTFSGGIQFTNPNIVVPGAANKT-PGTYTREGDTLTMKHPGAGYTRATISGDTFTMDNEGLLFVYQK 470
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126284.5306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3M1IBW6_9BACT9.890e-938.89Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A2E6D9Z1_9BACT1.320e-839.44Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A847G8T0_9BACT2.510e-740.00DUF1579 domain-containing protein n=1 Tax=Candidat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126284contigM-pyrifera_M_contig126284:226..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.6746273-CDS-M-pyrifera_M_contig126284:225..4471622815777.6746273-CDS-M-pyrifera_M_contig126284:225..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126284 226..447 -
1692277564.7143896-CDS-M-pyrifera_M_contig126284:225..4471692277564.7143896-CDS-M-pyrifera_M_contig126284:225..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126284 226..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126284.5306.1prot_M-pyrifera_M_contig126284.5306.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126284 226..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126284.5306.1

>prot_M-pyrifera_M_contig126284.5306.1 ID=prot_M-pyrifera_M_contig126284.5306.1|Name=mRNA_M-pyrifera_M_contig126284.5306.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
AGTITLREGGAFASTMEYSNASGRSMNRTFAGTYTTDGEEYILTWQGAGR
TKATIEDSTFTMNNEGMFFVYKK*
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mRNA from alignment at M-pyrifera_M_contig126284:226..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126284.5306.1 ID=mRNA_M-pyrifera_M_contig126284.5306.1|Name=mRNA_M-pyrifera_M_contig126284.5306.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig126284:226..447- (Macrocystis pyrifera P11B4 male)
GCTGGAACCATTACGCTGCGCGAAGGTGGAGCATTTGCATCGACAATGGA
GTACTCGAACGCGTCGGGGCGGTCGATGAATCGTACTTTCGCGGGCACGT
ACACCACAGATGGGGAAGAATACATACTGACGTGGCAGGGTGCGGGGCGC
ACTAAAGCCACGATTGAGGACAGTACCTTTACCATGAACAACGAAGGCAT
GTTCTTCGTGTACAAAAAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126284:226..447-

>mRNA_M-pyrifera_M_contig126284.5306.1 ID=mRNA_M-pyrifera_M_contig126284.5306.1|Name=mRNA_M-pyrifera_M_contig126284.5306.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig126284:226..447- (Macrocystis pyrifera P11B4 male)
GCTGGAACCATTACGCTGCGCGAAGGTGGAGCATTTGCATCGACAATGGA
GTACTCGAACGCGTCGGGGCGGTCGATGAATCGTACTTTCGCGGGCACGT
ACACCACAGATGGGGAAGAATACATACTGACGTGGCAGGGTGCGGGGCGC
ACTAAAGCCACGATTGAGGACAGTACCTTTACCATGAACAACGAAGGCAT
GTTCTTCGTGTACAAAAAATAGGCTGGAACCATTACGCTGCGCGAAGGTG
GAGCATTTGCATCGACAATGGAGTACTCGAACGCGTCGGGGCGGTCGATG
AATCGTACTTTCGCGGGCACGTACACCACAGATGGGGAAGAATACATACT
GACGTGGCAGGGTGCGGGGCGCACTAAAGCCACGATTGAGGACAGTACCT
TTACCATGAACAACGAAGGCATGTTCTTCGTGTACAAAAAATAG
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