mRNA_M-pyrifera_M_contig126266.5298.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126266.5298.1
Unique NamemRNA_M-pyrifera_M_contig126266.5298.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3B9CYK3_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9CYK3_9PLAN)

HSP 1 Score: 119 bits (297), Expect = 4.270e-33
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P  G +SV+T VSVPDGGT+LLGGIKRLREGR+  GVPILNKIPYVSRLF+N+ +GRET+S+MLMVTPRIIIQ+
Sbjct:   29 QPVIGVVSVSTTVSVPDGGTVLLGGIKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRETESVMLMVTPRIIIQE 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3D4PKM8_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D4PKM8_9PLAN)

HSP 1 Score: 118 bits (296), Expect = 4.520e-33
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P Q  + V+TVVSVPDGGT+LLGG+KRLREGR+  GVPILNKIPYVSRLF+N+ +GRET+SLMLMVTPRIIIQ+
Sbjct:   21 QPIQEQVFVSTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRETESLMLMVTPRIIIQE 95
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BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: UPI001EE8E66B (type II and III secretion system protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE8E66B)

HSP 1 Score: 117 bits (294), Expect = 4.790e-33
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   10 QGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            Q  + V+TVVSVPDGGT+LLGG+KRLREGR+  GVPILNKIPYVSRLF+NT +GRET+SLMLMVTPRIIIQ+
Sbjct:    2 QEQVFVSTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVTPRIIIQE 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3E0PUH7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PUH7_9BACT)

HSP 1 Score: 116 bits (290), Expect = 5.920e-32
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P    ISV TVVSVPDGGT+LLGG+K+LREGR+  GVPILNK+PYVSRLF+NT +GRET SL+LMVTPRIIIQ+
Sbjct:   37 QPVVDVISVTTVVSVPDGGTVLLGGVKQLREGRNMAGVPILNKLPYVSRLFKNTGVGRETDSLLLMVTPRIIIQE 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3B1E7C0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1E7C0_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 7.260e-32
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P    ++V T VSVPDGGT+LLGG+KRLREGR+  GVPILNKIPY+SRLF+NT +GRET+SLMLMVTPRIIIQ+
Sbjct:   30 QPVFEVVNVTTTVSVPDGGTVLLGGVKRLREGRNFAGVPILNKIPYISRLFKNTGVGRETESLMLMVTPRIIIQE 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A2S6U157_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin1 TaxID=2013074 RepID=A0A2S6U157_9PROT)

HSP 1 Score: 115 bits (288), Expect = 7.690e-32
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P Q  ++V T VSVPDGGT+LLGG+KRLREGR   GVPILNKIPY+SRLF+N+ +GRET+S+MLMVTPRIIIQ+
Sbjct:   22 QPIQQILNVTTTVSVPDGGTVLLGGVKRLREGRKMSGVPILNKIPYISRLFKNSGVGRETESIMLMVTPRIIIQE 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3D1DQ60_9PLAN (Uncharacterized protein (Fragment) n=5 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D1DQ60_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 1.800e-31
Identity = 52/75 (69.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P Q  ++V T VSVPDGGT+LLGG+KRL+EGR+  GVPILNKIPY+SRLF+N+ +GR+T+S+MLMVTPRIIIQ+
Sbjct:   28 QPVQAVLNVTTTVSVPDGGTVLLGGVKRLKEGRNMAGVPILNKIPYISRLFKNSGVGRDTESVMLMVTPRIIIQE 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3D3W1L1_9PLAN (General secretion pathway protein GspD (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D3W1L1_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 2.020e-31
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P    ++V T VSVPDGGTILLGGIKRL+EGR+  GVPILNKIPYVSRLF+NT +GRET+SLMLM+TPRIIIQ+
Sbjct:   30 QPVVEQVTVLTTVSVPDGGTILLGGIKRLKEGRNMSGVPILNKIPYVSRLFKNTGVGRETESLMLMITPRIIIQE 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: UPI0015D17B46 (hypothetical protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=UPI0015D17B46)

HSP 1 Score: 112 bits (279), Expect = 1.010e-30
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:   19 ISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQ 222
            I++ T VSVPDGGT+LLGGIKRLREGR+  GVPILNKIPYVSRLF+N+ +GRET+S+M+MVTPRIIIQ
Sbjct:    5 ITIATTVSVPDGGTVLLGGIKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRETESIMMMVTPRIIIQ 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Match: A0A3M1S5I5_9BACT (General secretion pathway protein GspD (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1S5I5_9BACT)

HSP 1 Score: 113 bits (282), Expect = 1.070e-30
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRLFRNTDIGRETQSLMLMVTPRIIIQD 225
            +P   +++VNT VSVPDGGT+LLGGIKRL EGR E GVPIL+KIPYV+RLF+N  +GRETQSLM+ VTPRIIIQ+
Sbjct:   41 QPTFASMTVNTTVSVPDGGTVLLGGIKRLSEGRSEAGVPILDKIPYVNRLFKNVGVGRETQSLMMTVTPRIIIQE 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126266.5298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9CYK3_9PLAN4.270e-3376.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A3D4PKM8_9PLAN4.520e-3376.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
UPI001EE8E66B4.790e-3379.17type II and III secretion system protein n=1 Tax=R... [more]
A0A3E0PUH7_9BACT5.920e-3274.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3B1E7C0_9ZZZZ7.260e-3273.33Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A2S6U157_9PROT7.690e-3272.00Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A3D1DQ60_9PLAN1.800e-3169.33Uncharacterized protein (Fragment) n=5 Tax=Plancto... [more]
A0A3D3W1L1_9PLAN2.020e-3174.67General secretion pathway protein GspD (Fragment) ... [more]
UPI0015D17B461.010e-3077.94hypothetical protein n=1 Tax=Fuerstiella marisgerm... [more]
A0A3M1S5I5_9BACT1.070e-3072.00General secretion pathway protein GspD (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126266contigM-pyrifera_M_contig126266:123..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog756272.Plabr_0833
KEGG koko:K02057,ko:K02453,ko:K03316,ko:K03442,ko:K10932
KEGG TC1.A.23.2,2.A.36,3.A.1.2,3.A.15
KEGG Pathwayko03070,ko05110,ko05111,map03070,map05110,map05111
KEGG ModuleM00221,M00331
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the GSP D family
EggNOG OGs2IY62@203682,COG1340@1,COG1340@2,COG1450@1,COG1450@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko02044
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.3561716-CDS-M-pyrifera_M_contig126266:122..3501622815777.3561716-CDS-M-pyrifera_M_contig126266:122..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126266 123..350 -
1692277564.6028502-CDS-M-pyrifera_M_contig126266:122..3501692277564.6028502-CDS-M-pyrifera_M_contig126266:122..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126266 123..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126266.5298.1prot_M-pyrifera_M_contig126266.5298.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126266 123..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126266.5298.1

>prot_M-pyrifera_M_contig126266.5298.1 ID=prot_M-pyrifera_M_contig126266.5298.1|Name=mRNA_M-pyrifera_M_contig126266.5298.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
EPDQGTISVNTVVSVPDGGTILLGGIKRLREGRHERGVPILNKIPYVSRL
FRNTDIGRETQSLMLMVTPRIIIQD*
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mRNA from alignment at M-pyrifera_M_contig126266:123..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126266.5298.1 ID=mRNA_M-pyrifera_M_contig126266.5298.1|Name=mRNA_M-pyrifera_M_contig126266.5298.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig126266:123..350- (Macrocystis pyrifera P11B4 male)
GAGCCTGATCAGGGAACCATTAGCGTCAACACAGTGGTCAGCGTCCCGGA
CGGCGGCACCATTCTGCTGGGCGGGATCAAACGCCTGCGAGAAGGCCGCC
ACGAAAGAGGCGTGCCGATCCTCAACAAGATCCCCTACGTCAGCCGCCTG
TTCCGGAACACGGACATCGGGAGAGAGACACAAAGCTTGATGCTAATGGT
CACCCCCCGAATCATCATCCAGGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126266:123..350-

>mRNA_M-pyrifera_M_contig126266.5298.1 ID=mRNA_M-pyrifera_M_contig126266.5298.1|Name=mRNA_M-pyrifera_M_contig126266.5298.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig126266:123..350- (Macrocystis pyrifera P11B4 male)
GAGCCTGATCAGGGAACCATTAGCGTCAACACAGTGGTCAGCGTCCCGGA
CGGCGGCACCATTCTGCTGGGCGGGATCAAACGCCTGCGAGAAGGCCGCC
ACGAAAGAGGCGTGCCGATCCTCAACAAGATCCCCTACGTCAGCCGCCTG
TTCCGGAACACGGACATCGGGAGAGAGACACAAAGCTTGATGCTAATGGT
CACCCCCCGAATCATCATCCAGGATTAAGAGCCTGATCAGGGAACCATTA
GCGTCAACACAGTGGTCAGCGTCCCGGACGGCGGCACCATTCTGCTGGGC
GGGATCAAACGCCTGCGAGAAGGCCGCCACGAAAGAGGCGTGCCGATCCT
CAACAAGATCCCCTACGTCAGCCGCCTGTTCCGGAACACGGACATCGGGA
GAGAGACACAAAGCTTGATGCTAATGGTCACCCCCCGAATCATCATCCAG
GATTAA
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