mRNA_M-pyrifera_M_contig126263.5296.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126263.5296.1
Unique NamemRNA_M-pyrifera_M_contig126263.5296.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A538S4W8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A538S4W8_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 8.310e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            EG  GPVYAV+F P+GK +ASAGFDG VRLNDA TG
Sbjct:  419 EGERGPVYAVAFRPDGKQIASAGFDGLVRLNDAQTG 454          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A517XTN9_9BACT (Translocation protein TolB n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517XTN9_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 CEGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            CEG SGP YAV++HP+GK +ASAGFDG V L+D ATG
Sbjct:  436 CEGVSGPAYAVAWHPDGKSIASAGFDGTVWLHDPATG 472          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A1W5DB26_9LECA (Nacht and wd40 domain protein n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5DB26_9LECA)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATGA 114
            EGHSGPV+AV F P+G+L+ASA FD  VRL D A+GA
Sbjct:    3 EGHSGPVFAVVFSPDGQLLASASFDNTVRLWDPASGA 39          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A5C1ACV8_9BACT (NB-ARC domain protein n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1ACV8_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 CEGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            CE  +G VYAV++ P+GK +ASAGFDGKV L+DA TG
Sbjct:  437 CERVTGAVYAVAWEPDGKAIASAGFDGKVWLHDATTG 473          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A6A6DVE8_9PEZI (Putative WD-repeat protein n=1 Tax=Zopfia rhizophila CBS 207.26 TaxID=1314779 RepID=A0A6A6DVE8_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATGA 114
            EGHS  V+AV F P+GKLVASA FDG V+L D ATGA
Sbjct:  605 EGHSESVFAVVFSPDGKLVASASFDGTVKLWDVATGA 641          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A831X6F0_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A831X6F0_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            EG  GP+YAV FH  GK+VA  GF+G VRL+DAATG
Sbjct:  556 EGDLGPIYAVDFHMNGKVVAVGGFNGVVRLHDAATG 591          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A2G2JKY6_9BACT (Cytochrome c domain-containing protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JKY6_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            EGH  PVY+V+F P GK +AS GFDG V +ND  TG
Sbjct:  414 EGHQEPVYSVTFSPNGKQIASVGFDGLVHINDTTTG 449          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A2Z3HK77_9BACT (Uncharacterized protein n=2 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3HK77_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 5.950e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 CEGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            CE  +GPVY V++ P+GK +ASAGFDG V L+D ATG
Sbjct:  431 CEKVTGPVYTVAWQPDGKRIASAGFDGTVWLHDPATG 467          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A8H6NK73_9PEZI (Vegetative incompatibility protein het-e-1 n=1 Tax=Colletotrichum plurivorum TaxID=2175906 RepID=A0A8H6NK73_9PEZI)

HSP 1 Score: 49.7 bits (117), Expect = 6.890e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATG 111
            EGH+ PVYAV+F P+G++VASA  D  VRL DAATG
Sbjct:   53 EGHTSPVYAVAFSPDGQVVASASEDNTVRLWDAATG 88          
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Match: A0A1W5D8I0_9LECA (WD40/YVTN repeat-like-containing domain n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5D8I0_9LECA)

HSP 1 Score: 49.7 bits (117), Expect = 8.090e-6
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    4 EGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATGA 114
            EGHSGPVYAV+F P GK +AS   D  VR+ DAATGA
Sbjct:  858 EGHSGPVYAVAFSPNGKQLASGSDDKTVRIWDAATGA 894          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126263.5296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A538S4W8_9BACT8.310e-975.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517XTN9_9BACT1.550e-870.27Translocation protein TolB n=1 Tax=Urbifossiella l... [more]
A0A1W5DB26_9LECA1.690e-667.57Nacht and wd40 domain protein n=1 Tax=Lasallia pus... [more]
A0A5C1ACV8_9BACT1.700e-664.86NB-ARC domain protein n=1 Tax=Limnoglobus roseus T... [more]
A0A6A6DVE8_9PEZI2.310e-670.27Putative WD-repeat protein n=1 Tax=Zopfia rhizophi... [more]
A0A831X6F0_9BACT2.320e-666.67Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A2G2JKY6_9BACT3.180e-661.11Cytochrome c domain-containing protein n=1 Tax=Bla... [more]
A0A2Z3HK77_9BACT5.950e-662.16Uncharacterized protein n=2 Tax=Gemmata obscuriglo... [more]
A0A8H6NK73_9PEZI6.890e-666.67Vegetative incompatibility protein het-e-1 n=1 Tax... [more]
A0A1W5D8I0_9LECA8.090e-667.57WD40/YVTN repeat-like-containing domain n=1 Tax=La... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126263contigM-pyrifera_M_contig126263:81..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.2732782-CDS-M-pyrifera_M_contig126263:80..1941622815777.2732782-CDS-M-pyrifera_M_contig126263:80..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126263 81..194 -
1692277564.563732-CDS-M-pyrifera_M_contig126263:80..1941692277564.563732-CDS-M-pyrifera_M_contig126263:80..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126263 81..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126263.5296.1prot_M-pyrifera_M_contig126263.5296.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126263 81..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126263.5296.1

>prot_M-pyrifera_M_contig126263.5296.1 ID=prot_M-pyrifera_M_contig126263.5296.1|Name=mRNA_M-pyrifera_M_contig126263.5296.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
CEGHSGPVYAVSFHPEGKLVASAGFDGKVRLNDAATGA
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mRNA from alignment at M-pyrifera_M_contig126263:81..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126263.5296.1 ID=mRNA_M-pyrifera_M_contig126263.5296.1|Name=mRNA_M-pyrifera_M_contig126263.5296.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig126263:81..194- (Macrocystis pyrifera P11B4 male)
TGCGAAGGTCATAGTGGCCCCGTTTATGCTGTGAGTTTTCATCCCGAGGG CAAGCTGGTTGCCTCGGCGGGCTTCGACGGTAAGGTTCGGCTGAACGATG CTGCCACAGGGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126263:81..194-

>mRNA_M-pyrifera_M_contig126263.5296.1 ID=mRNA_M-pyrifera_M_contig126263.5296.1|Name=mRNA_M-pyrifera_M_contig126263.5296.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig126263:81..194- (Macrocystis pyrifera P11B4 male)
TGCGAAGGTCATAGTGGCCCCGTTTATGCTGTGAGTTTTCATCCCGAGGG
CAAGCTGGTTGCCTCGGCGGGCTTCGACGGTAAGGTTCGGCTGAACGATG
CTGCCACAGGGGCATGCGAAGGTCATAGTGGCCCCGTTTATGCTGTGAGT
TTTCATCCCGAGGGCAAGCTGGTTGCCTCGGCGGGCTTCGACGGTAAGGT
TCGGCTGAACGATGCTGCCACAGGGGCA
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