mRNA_M-pyrifera_M_contig126241.5291.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A7X6ANM8_9ACTN (AI-2E family transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ANM8_9ACTN) HSP 1 Score: 251 bits (641), Expect = 2.790e-80 Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
G GVW+VY+ ALAGFSAAIGTALATQI+ FI++AP + D EEWL++++DEDIDL +LQ EFVE G DL FADD++NLGTTLLNI+FQAFT+ALF FYLVAEGPKLRRTVCSFLEPERQ VLDVWDLAI KTGGYIYSR ILALLSA AHW+AFEIIDVPF
Sbjct: 77 GFGVWLVYLAGLAALAGFSAAIGTALATQIDSFIEEAPGYVEDLEEWLRDNVDEDIDLQELQDEFVEGGGVNDLLGRFADDLLNLGTTLLNILFQAFTVALFLFYLVAEGPKLRRTVCSFLEPERQRTVLDVWDLAIEKTGGYIYSRTILALLSALAHWIAFEIIDVPF 245
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A2D8LVW0_9ACTN (AI-2E family transporter n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LVW0_9ACTN) HSP 1 Score: 247 bits (631), Expect = 1.860e-78 Identity = 117/170 (68.82%), Postives = 146/170 (85.88%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPFS 510
G+GVWI+Y+L+F + GFSAAIGT LATQIN FID+APR + DAE WL++++DEDIDL ++ +EFV+ G AADLA FADD+VNLGTT++N++FQ FT+ LF FY+VAEGPKLRRTVCSFL P RQ VL VWDLAI KTGGYI+SRG+LA+LSA AHW+AFE+++VPFS
Sbjct: 100 GLGVWIMYLLIFVGIVGFSAAIGTTLATQINNFIDEAPRYVEDAESWLRDNVDEDIDLSRVTEEFVDGGGAADLANRFADDVVNLGTTVVNVLFQTFTVLLFAFYIVAEGPKLRRTVCSFLPPARQRTVLSVWDLAIEKTGGYIFSRGVLAVLSAIAHWIAFEMLNVPFS 269
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6B1B592_9ACTN (AI-2E family transporter n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B592_9ACTN) HSP 1 Score: 233 bits (594), Expect = 6.460e-73 Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
GVGVWIVY++ A+AGFSAAIGTALA QI+ ID+AP + D E WLQ++ID+DIDL ++Q EFVE G +DLA FADD+VNLGTTLLNIVFQAFT+ LFTFYLVAEGPKLR T+ S L P+RQEM++++WDLAI KTGGY+YSR ILA+LSA AH + FEI+DVPF
Sbjct: 112 GVGVWIVYLVSLLAMAGFSAAIGTALADQIDSLIDEAPTYLDDLEGWLQDNIDDDIDLQRIQDEFVEGGGISDLAERFADDLVNLGTTLLNIVFQAFTVLLFTFYLVAEGPKLRLTIGSLLAPKRQEMLMNIWDLAIEKTGGYVYSRTILAVLSALAHGIVFEILDVPF 280
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A3M2GL67_ACTSX (AI-2E family transporter (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GL67_ACTSX) HSP 1 Score: 203 bits (516), Expect = 1.060e-61 Identity = 98/169 (57.99%), Postives = 127/169 (75.15%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
G+G IV++ + GFS +G ALATQ+ +F D P + D E WL++ ++ D+DL +++ FV +G A DL T FADDIVN+GTT++N+VFQ FT+ALFTFYLVAEGP+LRR VCS L P+RQ VL VWDLAI KTGGYIYSR +LA+LS AHW+AF ++DVPF
Sbjct: 90 GIGTGIVFVAILVGAGGFSFLVGQALATQLQDFADRVPAYVDDLERWLEDVLNTDVDLTEVRDRFVNEGGAQDLLTNFADDIVNIGTTVVNLVFQLFTVALFTFYLVAEGPQLRRAVCSVLAPDRQRQVLAVWDLAIEKTGGYIYSRLVLAVLSGIAHWIAFTLLDVPF 258
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6B1BUN9_9ACTN (AI-2E family transporter n=5 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BUN9_9ACTN) HSP 1 Score: 182 bits (463), Expect = 2.450e-53 Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
GVG I+++ + A+ F AIGT LA QI +F DDAP I+D E+WL++ D ++D L EF E G A+LAT AD+++NLG T+L ++FQ TIALFTFYLVAEGPKLRR +CS L ERQ VL +W+LAI KTGGYIYSR ILA++S AHWL F ++ PF
Sbjct: 74 GVGTGIMFLALLAAVGLFLWAIGTVLADQIGDFADDAPGYINDIEDWLEDTFDIEVDAQGLLDEFQEGGAVANLATRLADNLINLGATVLQVLFQILTIALFTFYLVAEGPKLRRNICSLLPAERQRQVLSIWNLAIDKTGGYIYSRLILAVISFLAHWLVFWLVGAPF 242
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6J7QAY4_9ZZZZ (Unannotated protein n=2 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7QAY4_9ZZZZ) HSP 1 Score: 181 bits (458), Expect = 1.940e-52 Identity = 91/169 (53.85%), Postives = 120/169 (71.01%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
G+G V++ + +L GF A+G+ LA Q+N F++DAP LI D E W Q +I EDI+ +++QEFV+ G A+ A A + V+ T +L+I+FQ TIALFTFYLVA+GP+LRR +CS L P RQ VL VWDLAI KTGG+I SR ILALLSA AHW+ F++I V F
Sbjct: 61 GIGTGAVFLTIVLSLGGFGVAMGSVLADQLNTFVNDAPGLIDDLERWSQRNISEDIEFTEIRQEFVDGGSASRWAQDLAQNAVDFSTAVLSILFQVLTIALFTFYLVADGPRLRRNICSLLPPARQREVLHVWDLAIEKTGGFIASRAILALLSATAHWIVFQVIGVDF 229
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A520XPI3_9ACTN (AI-2E family transporter n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XPI3_9ACTN) HSP 1 Score: 176 bits (447), Expect = 1.320e-50 Identity = 88/169 (52.07%), Postives = 118/169 (69.82%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
G G I++ + GFS +GT LA Q F++DAP LI D E WLQE+IDE DL+ ++ +F+ + + T AD++V +G T++ +VFQ FTIALFTFYL A+GP+LRRT+CS L+P+RQ VL VWDLAI+KTGGYI SR +LA +S+ W+AF II VPF
Sbjct: 100 GFGTLIMFSAALILIGGFSFIVGTVLAEQTTHFVEDAPELIDDLEVWLQENIDETTDLNAVRDQFLNEDGLGEQLTGLADNVVGIGATVVGLVFQIFTIALFTFYLTADGPRLRRTICSRLKPDRQRRVLGVWDLAIQKTGGYILSRTVLATISSIVTWIAFNIIGVPF 268
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6N8Y886_9ACTN (AI-2E family transporter n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8Y886_9ACTN) HSP 1 Score: 174 bits (441), Expect = 3.790e-50 Identity = 89/168 (52.98%), Postives = 120/168 (71.43%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVP 504
G G I ++++ A AGFSA +GTALA++ ID AP I D E WL + +++ D L+ EF+ G A DLA+ FADD+VN G T+++++F FT+ALFTFYLVAEGPKLR+ V S L R +V ++WDLA++KTGGY+YSR ILAL+SA HW+AF +IDVP
Sbjct: 71 GFGTAIAFLVVAVAAAGFSALVGTALASETTYLIDKAPGYIDDIEGWLDDTFGIEVEFDTLKDEFLAGGGAQDLASRFADDVVNAGATVVSLLFHLFTVALFTFYLVAEGPKLRQMVSSRLSERRAAIVTEIWDLAMQKTGGYMYSRTILALISAFVHWVAFVLIDVP 238
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6L7JQ42_9ACTN (AI-2E family transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JQ42_9ACTN) HSP 1 Score: 175 bits (443), Expect = 4.070e-50 Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVPF 507
G G ++++L+F L F AIGT LA QI EF D+ P ISD E W++ +D + L EF E G A+LAT AD++VNLG T+L ++FQ TI LFTFYLVAEGP LRR +CS L+P+ Q VL +WDLAI KTGGYIYSR ILA++S HWL F ++ PF
Sbjct: 94 GAGTGLMFLLLFALLGMFLWAIGTVLADQIGEFADNGPEYISDIENWVEGTFQIAVDAEGLIDEFQEGGAVANLATRLADNLVNLGATVLQVLFQILTILLFTFYLVAEGPTLRRNICSLLKPQHQRQVLKIWDLAIEKTGGYIYSRLILAVISTLVHWLVFWLLGAPF 262
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Match: A0A6B1E856_9ACTN (AI-2E family transporter n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E856_9ACTN) HSP 1 Score: 173 bits (439), Expect = 6.080e-50 Identity = 86/168 (51.19%), Postives = 121/168 (72.02%), Query Frame = 1
Query: 1 GVGVWIVYILMFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKLQQEFVEDGRAADLATTFADDIVNLGTTLLNIVFQAFTIALFTFYLVAEGPKLRRTVCSFLEPERQEMVLDVWDLAIRKTGGYIYSRGILALLSAAAHWLAFEIIDVP 504
G+G + +++ AGF A +GTALA++ N I++AP I D E WL + + +++ D L++EF+ G DLA+ FADD+VN+GTT+++++FQ FT+ALFTFYLVAEGPKLRR V S L R +V ++WDLA+ KTGGY+YSR ILA +SA HW AF ++DVP
Sbjct: 67 GIGTAVTFLVAAGLAAGFFALVGTALASETNHLIENAPAYIDDIEGWLDDALGIELEFDTLKEEFLAGGGLQDLASRFADDVVNVGTTVVSLLFQLFTVALFTFYLVAEGPKLRRMVSSRLSEHRAVIVTEIWDLAMEKTGGYMYSRTILAFISALVHWGAFALLDVP 234 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126241.5291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126241.5291.1 >prot_M-pyrifera_M_contig126241.5291.1 ID=prot_M-pyrifera_M_contig126241.5291.1|Name=mRNA_M-pyrifera_M_contig126241.5291.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp MFFALAGFSAAIGTALATQINEFIDDAPRLISDAEEWLQEHIDEDIDLDKback to top mRNA from alignment at M-pyrifera_M_contig126241:1..510- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126241.5291.1 ID=mRNA_M-pyrifera_M_contig126241.5291.1|Name=mRNA_M-pyrifera_M_contig126241.5291.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig126241:1..510- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126241:1..510- >mRNA_M-pyrifera_M_contig126241.5291.1 ID=mRNA_M-pyrifera_M_contig126241.5291.1|Name=mRNA_M-pyrifera_M_contig126241.5291.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig126241:1..510- (Macrocystis pyrifera P11B4 male)back to top |