mRNA_M-pyrifera_M_contig126233.5290.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126233.5290.1
Unique NamemRNA_M-pyrifera_M_contig126233.5290.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A3C0AMB7_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AMB7_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 1.820e-97
Identity = 149/170 (87.65%), Postives = 160/170 (94.12%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKK +GFSGRIDHRLYKKG DGK+VEA+KG F+GRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITL+A FP IPVKMEGSI+L +LTVGRPDVYIL++ GPQKLIDASAAKT+ SSSSQA LEIPT+INGISKIKVTLPVTVTPDVKSTL
Sbjct:  169 RLTFPPDDKKYEGFSGRIDHRLYKKGPDGKMVEAHKGMFFGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLDAAFPGIPVKMEGSIDLKVLTVGRPDVYILQIKGPQKLIDASAAKTNHSSSSQAILEIPTQINGISKIKVTLPVTVTPDVKSTL 338
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BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A355GFD7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355GFD7_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 3.230e-95
Identity = 149/170 (87.65%), Postives = 160/170 (94.12%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKK +GFSGRIDHRLYKKG DGK+VEA+KG F+GRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITL+A FP IPVKMEGSI+L +LTVGRPDVYIL++ GPQKLIDASAAKT+ SSSSQA LEIPT+INGISKIKVTLPVTVTPDVKSTL
Sbjct:  346 RLTFPPDDKKYEGFSGRIDHRLYKKGPDGKMVEAHKGMFFGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLDAAFPGIPVKMEGSIDLKVLTVGRPDVYILQIKGPQKLIDASAAKTNHSSSSQAILEIPTQINGISKIKVTLPVTVTPDVKSTL 515
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BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A518ACI5_9PLAN (Serine protease AprX n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518ACI5_9PLAN)

HSP 1 Score: 306 bits (785), Expect = 2.200e-94
Identity = 156/170 (91.76%), Postives = 163/170 (95.88%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKKTKGFSGRIDHRLYKKG DGK+VEA+KGSFYGRGKSFN IPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITL+A FPSIPVKMEGS+NL+IL+VGRPDVYILKV GPQKLIDASAA  DPSSSSQATLEIPTKI+GISKIKVTLPVTVTPDVKSTL
Sbjct: 1047 RLTFPPDDKKTKGFSGRIDHRLYKKGPDGKMVEAHKGSFYGRGKSFNTIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLDAYFPSIPVKMEGSLNLSILSVGRPDVYILKVKGPQKLIDASAAHKDPSSSSQATLEIPTKISGISKIKVTLPVTVTPDVKSTL 1216
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BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A517RLD7_9PLAN (Serine protease AprX n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RLD7_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 5.070e-90
Identity = 149/170 (87.65%), Postives = 159/170 (93.53%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKK +GF GRIDHRLYKKG DGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLK S+GTITL+A FP IPVKMEGS+ L+IL+VGRPDVYILK+ GPQKLIDASAAKT+ +SSSQATLEIPTKI G+SKIKVTLPVTVTPDVKSTL
Sbjct: 1046 RLTFPPDDKKYEGFRGRIDHRLYKKGPDGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKHSKGTITLDAYFPGIPVKMEGSVGLSILSVGRPDVYILKIKGPQKLIDASAAKTNNTSSSQATLEIPTKIGGVSKIKVTLPVTVTPDVKSTL 1215
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BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A2E2BY53_9PLAN (Peptidase_S8 domain-containing protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BY53_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 7.390e-90
Identity = 149/170 (87.65%), Postives = 160/170 (94.12%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKK +GFSGRIDHRLYKKG DGK+VEA+KG F+GRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITL+A FP IPVKMEGSI+L +LTVGRPDVYIL++ GPQKLIDASAAKT+ SSSSQA LEIPT+INGISKIKVTLPVTVTPDVKSTL
Sbjct: 1100 RLTFPPDDKKYEGFSGRIDHRLYKKGPDGKMVEAHKGMFFGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLDAAFPGIPVKMEGSIDLKVLTVGRPDVYILQIKGPQKLIDASAAKTNHSSSSQAILEIPTQINGISKIKVTLPVTVTPDVKSTL 1269
[Close]
BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Match: A0A517WQ93_9PLAN (Serine protease AprX n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQ93_9PLAN)

HSP 1 Score: 282 bits (721), Expect = 2.160e-85
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIPRPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGSINLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKINGISKIKVTLPVTVTPDVKSTL 510
            RLTFP DDKK KGFSGRIDHRLYKK  DGK+V+AYKGSF GRGKSFNNIPRPEPGKPYETLYAAVDT+FTVP+DEGLK SQGTITL+A FP IPVKMEG+  L+IL+VGRPDVYILK+  P+KLIDASAAKT  SS SQATLEIPTKI G+SKIKVTLPVTVTPDVKSTL
Sbjct: 1049 RLTFPPDDKKYKGFSGRIDHRLYKKSPDGKMVQAYKGSFAGRGKSFNNIPRPEPGKPYETLYAAVDTFFTVPFDEGLKQSQGTITLDAYFPGIPVKMEGAFQLSILSVGRPDVYILKIKAPKKLIDASAAKTSHSSPSQATLEIPTKIGGVSKIKVTLPVTVTPDVKSTL 1218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126233.5290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3C0AMB7_9PLAN1.820e-9787.65Uncharacterized protein (Fragment) n=2 Tax=Plancto... [more]
A0A355GFD7_9PLAN3.230e-9587.65Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518ACI5_9PLAN2.200e-9491.76Serine protease AprX n=8 Tax=Gimesia TaxID=1649453... [more]
A0A517RLD7_9PLAN5.070e-9087.65Serine protease AprX n=2 Tax=Gimesia TaxID=1649453... [more]
A0A2E2BY53_9PLAN7.390e-9087.65Peptidase_S8 domain-containing protein n=9 Tax=Pla... [more]
A0A517WQ93_9PLAN2.160e-8584.12Serine protease AprX n=2 Tax=Gimesia aquarii TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126233contigM-pyrifera_M_contig126233:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score233.8
Seed ortholog evalue5.9e-59
Seed eggNOG ortholog344747.PM8797T_19445
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S8 family
EggNOG OGsCOG1404@1,COG1404@2
EC3.4.14.10
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.0492384-CDS-M-pyrifera_M_contig126233:1..5111622815777.0492384-CDS-M-pyrifera_M_contig126233:1..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126233 2..511 +
1692277564.4838793-CDS-M-pyrifera_M_contig126233:1..5111692277564.4838793-CDS-M-pyrifera_M_contig126233:1..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126233 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126233.5290.1prot_M-pyrifera_M_contig126233.5290.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126233 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126233.5290.1

>prot_M-pyrifera_M_contig126233.5290.1 ID=prot_M-pyrifera_M_contig126233.5290.1|Name=mRNA_M-pyrifera_M_contig126233.5290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
RLTFPSDDKKTKGFSGRIDHRLYKKGADGKLVEAYKGSFYGRGKSFNNIP
RPEPGKPYETLYAAVDTYFTVPYDEGLKDSQGTITLEALFPSIPVKMEGS
INLNILTVGRPDVYILKVTGPQKLIDASAAKTDPSSSSQATLEIPTKING
ISKIKVTLPVTVTPDVKSTL
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mRNA from alignment at M-pyrifera_M_contig126233:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126233.5290.1 ID=mRNA_M-pyrifera_M_contig126233.5290.1|Name=mRNA_M-pyrifera_M_contig126233.5290.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig126233:2..511+ (Macrocystis pyrifera P11B4 male)
CGGCTGACCTTCCCCTCCGACGATAAAAAAACAAAGGGCTTCAGTGGCCG
TATCGATCACCGACTGTATAAAAAAGGTGCGGATGGGAAACTGGTCGAAG
CCTATAAAGGTTCGTTCTACGGACGCGGAAAATCCTTCAACAATATTCCC
CGTCCCGAACCGGGCAAACCCTACGAAACGCTGTATGCCGCTGTGGATAC
CTACTTCACGGTTCCCTACGACGAAGGCTTAAAGGACAGCCAGGGCACCA
TTACCCTGGAAGCACTCTTCCCGAGTATCCCGGTCAAAATGGAAGGATCA
ATCAATCTCAACATCCTGACTGTCGGACGCCCTGATGTTTACATCCTTAA
GGTCACAGGTCCTCAGAAACTGATTGATGCCTCTGCTGCCAAAACGGATC
CCAGCAGTTCCTCACAGGCGACACTGGAGATTCCGACCAAAATCAATGGT
ATCTCCAAGATCAAAGTGACCCTGCCTGTGACGGTGACCCCGGATGTCAA
ATCGACTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126233:2..511+

>mRNA_M-pyrifera_M_contig126233.5290.1 ID=mRNA_M-pyrifera_M_contig126233.5290.1|Name=mRNA_M-pyrifera_M_contig126233.5290.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig126233:2..511+ (Macrocystis pyrifera P11B4 male)
CGGCTGACCTTCCCCTCCGACGATAAAAAAACAAAGGGCTTCAGTGGCCG
TATCGATCACCGACTGTATAAAAAAGGTGCGGATGGGAAACTGGTCGAAG
CCTATAAAGGTTCGTTCTACGGACGCGGAAAATCCTTCAACAATATTCCC
CGTCCCGAACCGGGCAAACCCTACGAAACGCTGTATGCCGCTGTGGATAC
CTACTTCACGGTTCCCTACGACGAAGGCTTAAAGGACAGCCAGGGCACCA
TTACCCTGGAAGCACTCTTCCCGAGTATCCCGGTCAAAATGGAAGGATCA
ATCAATCTCAACATCCTGACTGTCGGACGCCCTGATGTTTACATCCTTAA
GGTCACAGGTCCTCAGAAACTGATTGATGCCTCTGCTGCCAAAACGGATC
CCAGCAGTTCCTCACAGGCGACACTGGAGATTCCGACCAAAATCAATGGT
ATCTCCAAGATCAAAGTGACCCTGCCTGTGACGGTGACCCCGGATGTCAA
ATCGACTCTGCGGCTGACCTTCCCCTCCGACGATAAAAAAACAAAGGGCT
TCAGTGGCCGTATCGATCACCGACTGTATAAAAAAGGTGCGGATGGGAAA
CTGGTCGAAGCCTATAAAGGTTCGTTCTACGGACGCGGAAAATCCTTCAA
CAATATTCCCCGTCCCGAACCGGGCAAACCCTACGAAACGCTGTATGCCG
CTGTGGATACCTACTTCACGGTTCCCTACGACGAAGGCTTAAAGGACAGC
CAGGGCACCATTACCCTGGAAGCACTCTTCCCGAGTATCCCGGTCAAAAT
GGAAGGATCAATCAATCTCAACATCCTGACTGTCGGACGCCCTGATGTTT
ACATCCTTAAGGTCACAGGTCCTCAGAAACTGATTGATGCCTCTGCTGCC
AAAACGGATCCCAGCAGTTCCTCACAGGCGACACTGGAGATTCCGACCAA
AATCAATGGTATCTCCAAGATCAAAGTGACCCTGCCTGTGACGGTGACCC
CGGATGTCAAATCGACTCTG
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