mRNA_M-pyrifera_M_contig126207.5286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126207.5286.1
Unique NamemRNA_M-pyrifera_M_contig126207.5286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126207.5286.1 vs. uniprot
Match: A0A5N6ZMD7_9EURO (Ankyrin repeat-containing domain protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A5N6ZMD7_9EURO)

HSP 1 Score: 55.5 bits (132), Expect = 6.320e-6
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:    4 HSAIVELLLAHGAAVDAKTSTGLSALHIAIDQANVAMCQMLMEGCADPSVVDDKGCTALHRAVIAGHE-----TVIELFLEFSTEEDYAPYINVNCFAKDGTTPLVTAVVRKNQDVVALLLAYKAD 366
            H  ++E+LL+HGA V+A    G +AL  AID+  V   ++L+E  AD ++ ++     L R +   H+      ++EL L    +         NC  + G TPL  A V++N D++ LLL + A+
Sbjct:  292 HDKVIEVLLSHGANVNALVH-GFTALSFAIDEGKVPAVKLLLENGADLTMTNEP---FLLRTLKRSHDQEADTVIVELLLNHRADP--------NCCDRKGRTPLFLATVKQNLDIMRLLLVHGAN 405
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BLAST of mRNA_M-pyrifera_M_contig126207.5286.1 vs. uniprot
Match: UPI00147105D0 (transient receptor potential cation channel subfamily A member 1b n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI00147105D0)

HSP 1 Score: 53.5 bits (127), Expect = 3.400e-5
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   79 LHIAIDQANVAMCQMLMEGCADPSVVDDKGCTALHRAVIAGHETVIELFLEFSTEEDYAPYINVNCFAKDGTTPLVTAVVRKNQDVVALLLAYKA 363
            LH A++Q     C+ L++  ADP+++++   + LH AV  GH +++ELFL +ST +        N     G TPL+ A    N + +++LL + A
Sbjct:   99 LHWAVEQNKADSCRALLDLEADPNILNNMLQSPLHLAVNLGHNSLVELFLSYSTTDS-------NLHGDLGNTPLILACSINNFEALSILLKHGA 186
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BLAST of mRNA_M-pyrifera_M_contig126207.5286.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-5
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:   10 AIVELLLAHGAA-VDAKTSTGLSALHIAIDQANVAMCQMLMEGCADPSVVDDKGCTALHRAVIAGHETVIELFLEFSTEEDYAPYINVNCFAKDGTTPLVTAVVRKNQDVVALLLAYKADATLTTVAGDS 396
            A  E LL  G   +DA+ S   +ALH+A+ Q +V M ++L+   AD ++ D+ G T LH A         E  L           ++V+  A+   T L  AV++ + ++V LLLA  ADATL   AG +
Sbjct:  666 ACAEALLGSGKVELDARGSHSSTALHLAVMQGHVEMVKLLLAVGADATLADEIGNTPLHVAAFKNELACAEALLGSGK-------VDVDARAEHILTALNMAVMQGHVEMVKLLLAVGADATLADEAGQA 788
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BLAST of mRNA_M-pyrifera_M_contig126207.5286.1 vs. uniprot
Match: A0A1V9YD74_9STRA (Ankyrin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD74_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.900e-5
Identity = 42/142 (29.58%), Postives = 64/142 (45.07%), Query Frame = 1 
Query:   13 IVELLLAHGAAVDAKTSTGLSALHIAIDQANVAMCQMLMEGCADPSVVDDKGCTALHRAVIAGHETVIELFLEFSTEEDYAPY-----------------------INVNCFAKDGTTPLVTAVVRKNQDVVALLLAYKADA 369
            ++E LL+  A VDA+   G+S L ++ +  +V   +ML++  A PSVVD++G +ALH A        + + LE   + +   Y                        +V+    DG TPL  AVV  +    A LL   ADA
Sbjct:    1 MIEFLLSQRANVDAQDYDGVSPLMLSAENGDVTGMRMLLDRGARPSVVDNRGYSALHHACAKHQVAAVSVLLETGADLNSPSYDGMFPLHILALLGFTDVATLLTQSHVDVRDADGRTPLHLAVVSGHAAFAAFLLEVGADA 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126207.5286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5N6ZMD7_9EURO6.320e-631.75Ankyrin repeat-containing domain protein n=2 Tax=A... [more]
UPI00147105D03.400e-532.63transient receptor potential cation channel subfam... [more]
A0L850_MAGMM4.610e-533.85Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A1V9YD74_9STRA6.900e-529.58Ankyrin n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126207contigM-pyrifera_M_contig126207:7..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.5
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog162425.CADANIAP00001415
Preferred nameNAS6
KEGG koko:K06694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0019538,GO:0022607,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.Proteasome regulatory particle subunit (Nas6)
EggNOG OGs20ER3@147545,39VDP@33154,3NXYE@4751,3QQ59@4890,3S4T0@5042,COG0666@1,KOG4412@2759
COG Functional cat.O
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.911033-CDS-M-pyrifera_M_contig126207:6..5071622815776.911033-CDS-M-pyrifera_M_contig126207:6..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126207 7..507 -
1692277564.4359322-CDS-M-pyrifera_M_contig126207:6..5071692277564.4359322-CDS-M-pyrifera_M_contig126207:6..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126207 7..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126207.5286.1prot_M-pyrifera_M_contig126207.5286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126207 7..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126207.5286.1

>prot_M-pyrifera_M_contig126207.5286.1 ID=prot_M-pyrifera_M_contig126207.5286.1|Name=mRNA_M-pyrifera_M_contig126207.5286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
GHSAIVELLLAHGAAVDAKTSTGLSALHIAIDQANVAMCQMLMEGCADPS
VVDDKGCTALHRAVIAGHETVIELFLEFSTEEDYAPYINVNCFAKDGTTP
LVTAVVRKNQDVVALLLAYKADATLTTVAGDSPLAVAVRKKDLSVVRMLL
EAGASPTAMDDNDMSPV
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mRNA from alignment at M-pyrifera_M_contig126207:7..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126207.5286.1 ID=mRNA_M-pyrifera_M_contig126207.5286.1|Name=mRNA_M-pyrifera_M_contig126207.5286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig126207:7..507- (Macrocystis pyrifera P11B4 male)
GGCCACTCGGCGATCGTTGAGCTCCTGCTGGCCCACGGTGCTGCCGTCGA
CGCCAAGACCTCCACTGGCCTCTCTGCCCTGCACATCGCCATCGACCAGG
CCAACGTTGCGATGTGTCAGATGCTGATGGAGGGCTGTGCCGACCCGTCT
GTGGTGGATGACAAGGGCTGCACGGCGCTGCACCGCGCCGTCATCGCAGG
CCACGAGACGGTCATCGAGCTCTTCCTCGAGTTCTCCACGGAGGAGGACT
ATGCGCCCTACATCAATGTCAACTGCTTTGCCAAGGACGGCACCACGCCC
CTCGTGACTGCCGTAGTCCGCAAGAACCAGGACGTTGTGGCCCTGCTGCT
GGCCTACAAGGCAGATGCCACGCTCACCACTGTGGCCGGCGACTCTCCTC
TGGCCGTTGCTGTGCGAAAGAAAGATCTTTCCGTCGTACGCATGCTCCTC
GAGGCCGGTGCGTCTCCCACTGCCATGGATGACAACGACATGTCGCCCGT
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126207:7..507-

>mRNA_M-pyrifera_M_contig126207.5286.1 ID=mRNA_M-pyrifera_M_contig126207.5286.1|Name=mRNA_M-pyrifera_M_contig126207.5286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig126207:7..507- (Macrocystis pyrifera P11B4 male)
GGCCACTCGGCGATCGTTGAGCTCCTGCTGGCCCACGGTGCTGCCGTCGA
CGCCAAGACCTCCACTGGCCTCTCTGCCCTGCACATCGCCATCGACCAGG
CCAACGTTGCGATGTGTCAGATGCTGATGGAGGGCTGTGCCGACCCGTCT
GTGGTGGATGACAAGGGCTGCACGGCGCTGCACCGCGCCGTCATCGCAGG
CCACGAGACGGTCATCGAGCTCTTCCTCGAGTTCTCCACGGAGGAGGACT
ATGCGCCCTACATCAATGTCAACTGCTTTGCCAAGGACGGCACCACGCCC
CTCGTGACTGCCGTAGTCCGCAAGAACCAGGACGTTGTGGCCCTGCTGCT
GGCCTACAAGGCAGATGCCACGCTCACCACTGTGGCCGGCGACTCTCCTC
TGGCCGTTGCTGTGCGAAAGAAAGATCTTTCCGTCGTACGCATGCTCCTC
GAGGCCGGTGCGTCTCCCACTGCCATGGATGACAACGACATGTCGCCCGT
GGGCCACTCGGCGATCGTTGAGCTCCTGCTGGCCCACGGTGCTGCCGTCG
ACGCCAAGACCTCCACTGGCCTCTCTGCCCTGCACATCGCCATCGACCAG
GCCAACGTTGCGATGTGTCAGATGCTGATGGAGGGCTGTGCCGACCCGTC
TGTGGTGGATGACAAGGGCTGCACGGCGCTGCACCGCGCCGTCATCGCAG
GCCACGAGACGGTCATCGAGCTCTTCCTCGAGTTCTCCACGGAGGAGGAC
TATGCGCCCTACATCAATGTCAACTGCTTTGCCAAGGACGGCACCACGCC
CCTCGTGACTGCCGTAGTCCGCAAGAACCAGGACGTTGTGGCCCTGCTGC
TGGCCTACAAGGCAGATGCCACGCTCACCACTGTGGCCGGCGACTCTCCT
CTGGCCGTTGCTGTGCGAAAGAAAGATCTTTCCGTCGTACGCATGCTCCT
CGAGGCCGGTGCGTCTCCCACTGCCATGGATGACAACGACATGTCGCCCG
TG
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