mRNA_M-pyrifera_M_contig126205.5285.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126205.5285.1
Unique NamemRNA_M-pyrifera_M_contig126205.5285.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126205.5285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126205contigM-pyrifera_M_contig126205:8..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue8.1e-07
Seed eggNOG ortholog45351.EDO49986
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs2BFIX@1,2S176@2759,3ABJN@33154,3C2WG@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.8797255-CDS-M-pyrifera_M_contig126205:7..4631622815776.8797255-CDS-M-pyrifera_M_contig126205:7..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126205 8..463 -
1692277564.423333-CDS-M-pyrifera_M_contig126205:7..4631692277564.423333-CDS-M-pyrifera_M_contig126205:7..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126205 8..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126205.5285.1prot_M-pyrifera_M_contig126205.5285.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126205 8..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126205.5285.1

>prot_M-pyrifera_M_contig126205.5285.1 ID=prot_M-pyrifera_M_contig126205.5285.1|Name=mRNA_M-pyrifera_M_contig126205.5285.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
LELQTNSYSTSCTRCPPGQYSLRAGSLRNSVATTAQCRLCPTWAVCGGGD
DVTATPGRWATTLQHDPTTLLSPLVRCAEGYCCRDSASCTAPDSCAPTRA
GFLCGDCVDGYSGAFGTSNCIPNAECGSRWQDVALWPATVLLLTIFPFWL
LL
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mRNA from alignment at M-pyrifera_M_contig126205:8..463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126205.5285.1 ID=mRNA_M-pyrifera_M_contig126205.5285.1|Name=mRNA_M-pyrifera_M_contig126205.5285.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig126205:8..463- (Macrocystis pyrifera P11B4 male)
TTGGAGCTGCAAACCAACTCCTACTCCACGTCGTGCACCCGATGCCCCCC
GGGCCAGTACTCCCTCCGAGCTGGCAGCTTGCGCAACTCTGTTGCTACCA
CCGCGCAGTGCCGGCTGTGCCCAACCTGGGCAGTCTGCGGCGGAGGCGAT
GATGTGACCGCAACGCCGGGGCGGTGGGCGACCACGCTCCAACACGATCC
GACCACGCTGTTGTCCCCTCTGGTCCGGTGCGCGGAGGGGTACTGCTGCC
GCGATTCTGCATCGTGCACTGCACCAGACTCCTGCGCGCCAACCCGCGCT
GGTTTCTTGTGCGGCGATTGCGTGGATGGTTACTCGGGTGCGTTCGGCAC
TTCCAACTGTATCCCGAACGCGGAGTGTGGCTCGCGGTGGCAAGATGTGG
CGCTGTGGCCTGCAACAGTGCTGCTCCTCACCATCTTCCCGTTCTGGCTG
CTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126205:8..463-

>mRNA_M-pyrifera_M_contig126205.5285.1 ID=mRNA_M-pyrifera_M_contig126205.5285.1|Name=mRNA_M-pyrifera_M_contig126205.5285.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig126205:8..463- (Macrocystis pyrifera P11B4 male)
TTGGAGCTGCAAACCAACTCCTACTCCACGTCGTGCACCCGATGCCCCCC
GGGCCAGTACTCCCTCCGAGCTGGCAGCTTGCGCAACTCTGTTGCTACCA
CCGCGCAGTGCCGGCTGTGCCCAACCTGGGCAGTCTGCGGCGGAGGCGAT
GATGTGACCGCAACGCCGGGGCGGTGGGCGACCACGCTCCAACACGATCC
GACCACGCTGTTGTCCCCTCTGGTCCGGTGCGCGGAGGGGTACTGCTGCC
GCGATTCTGCATCGTGCACTGCACCAGACTCCTGCGCGCCAACCCGCGCT
GGTTTCTTGTGCGGCGATTGCGTGGATGGTTACTCGGGTGCGTTCGGCAC
TTCCAACTGTATCCCGAACGCGGAGTGTGGCTCGCGGTGGCAAGATGTGG
CGCTGTGGCCTGCAACAGTGCTGCTCCTCACCATCTTCCCGTTCTGGCTG
CTGCTCTTGGAGCTGCAAACCAACTCCTACTCCACGTCGTGCACCCGATG
CCCCCCGGGCCAGTACTCCCTCCGAGCTGGCAGCTTGCGCAACTCTGTTG
CTACCACCGCGCAGTGCCGGCTGTGCCCAACCTGGGCAGTCTGCGGCGGA
GGCGATGATGTGACCGCAACGCCGGGGCGGTGGGCGACCACGCTCCAACA
CGATCCGACCACGCTGTTGTCCCCTCTGGTCCGGTGCGCGGAGGGGTACT
GCTGCCGCGATTCTGCATCGTGCACTGCACCAGACTCCTGCGCGCCAACC
CGCGCTGGTTTCTTGTGCGGCGATTGCGTGGATGGTTACTCGGGTGCGTT
CGGCACTTCCAACTGTATCCCGAACGCGGAGTGTGGCTCGCGGTGGCAAG
ATGTGGCGCTGTGGCCTGCAACAGTGCTGCTCCTCACCATCTTCCCGTTC
TGGCTGCTGCTC
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