mRNA_M-pyrifera_M_contig126190.5283.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126190.5283.1
Unique NamemRNA_M-pyrifera_M_contig126190.5283.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126190.5283.1 vs. uniprot
Match: A0A5J4YXE3_PORPP (Protein O-glucosyltransferase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXE3_PORPP)

HSP 1 Score: 53.9 bits (128), Expect = 4.120e-6
Identity = 32/103 (31.07%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:    1 PTLVAVSCLSSANVPFPFWMEP--RTGPFADWDGNIKKDAERVRSKALPWEERIPRAVFRGNARSCI---------LPCARLWSSTDNWRSCGRTLLFDLATS 276
            P    V+C  S N+PFP W     R G ++ WD  ++K  +      +PW+E+ PRAVFRG  R+           L C+ +  +   + S  R  +FD++ S
Sbjct:  429 PVFTIVACNFSDNIPFPMWEGDVARGGGYSGWDSRMEKFGQDY----IPWQEKAPRAVFRGGNRASAYFPEKDLADLHCSEIGRARLRYLSQIRAEIFDVSLS 527
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BLAST of mRNA_M-pyrifera_M_contig126190.5283.1 vs. uniprot
Match: A0A1X6NIN3_PORUM (CAP10 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIN3_PORUM)

HSP 1 Score: 52.8 bits (125), Expect = 9.840e-6
Identity = 37/110 (33.64%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:    1 PTLVAVSCLSSANVPFPFWMEPRTGP----FADWDGNIKKDAERVRSKALPWEERIPRAVFRGNARSCILPCARLWSSTDNWRSCGRTLLFDLATSDPEYARVLDVAVGG 318
            P    VSC  S NVPFP W     G     F  WD  +K+ A+       PWE++ P+AVFRG  R  +    +  +     R+ GR+ L  LA   P    + DV++ G
Sbjct:  146 PVFTIVSCNFSDNVPFPMWEGGDAGDRGAGFMSWDAMMKEYAQ----DTTPWEQKTPKAVFRGGNRPSMFYADKKDAEAGCDRT-GRSRLKFLADQTPS---LYDVSISG 247
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126190.5283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5J4YXE3_PORPP4.120e-631.07Protein O-glucosyltransferase 1 n=1 Tax=Porphyridi... [more]
A0A1X6NIN3_PORUM9.840e-633.64CAP10 domain-containing protein n=1 Tax=Porphyra u... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126190contigM-pyrifera_M_contig126190:88..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.8123004-CDS-M-pyrifera_M_contig126190:87..4081622815776.8123004-CDS-M-pyrifera_M_contig126190:87..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126190 88..408 -
1692277564.3980289-CDS-M-pyrifera_M_contig126190:87..4081692277564.3980289-CDS-M-pyrifera_M_contig126190:87..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126190 88..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126190.5283.1prot_M-pyrifera_M_contig126190.5283.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126190 88..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126190.5283.1

>prot_M-pyrifera_M_contig126190.5283.1 ID=prot_M-pyrifera_M_contig126190.5283.1|Name=mRNA_M-pyrifera_M_contig126190.5283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
PTLVAVSCLSSANVPFPFWMEPRTGPFADWDGNIKKDAERVRSKALPWEE
RIPRAVFRGNARSCILPCARLWSSTDNWRSCGRTLLFDLATSDPEYARVL
DVAVGGA
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mRNA from alignment at M-pyrifera_M_contig126190:88..408-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126190.5283.1 ID=mRNA_M-pyrifera_M_contig126190.5283.1|Name=mRNA_M-pyrifera_M_contig126190.5283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig126190:88..408- (Macrocystis pyrifera P11B4 male)
CCCACCCTGGTCGCCGTCTCTTGCCTCAGCAGCGCAAACGTGCCGTTTCC
CTTTTGGATGGAGCCGCGCACAGGGCCGTTCGCGGATTGGGATGGGAACA
TCAAGAAGGATGCGGAACGTGTACGCAGCAAGGCACTGCCGTGGGAGGAG
CGTATCCCACGTGCCGTCTTTCGGGGAAACGCCCGCAGCTGTATCTTGCC
TTGTGCACGCCTGTGGTCCAGCACCGATAACTGGAGAAGCTGCGGACGTA
CGCTGCTGTTCGATCTGGCCACGTCTGACCCCGAGTACGCTCGCGTCCTC
GATGTAGCCGTCGGCGGTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126190:88..408-

>mRNA_M-pyrifera_M_contig126190.5283.1 ID=mRNA_M-pyrifera_M_contig126190.5283.1|Name=mRNA_M-pyrifera_M_contig126190.5283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig126190:88..408- (Macrocystis pyrifera P11B4 male)
CCCACCCTGGTCGCCGTCTCTTGCCTCAGCAGCGCAAACGTGCCGTTTCC
CTTTTGGATGGAGCCGCGCACAGGGCCGTTCGCGGATTGGGATGGGAACA
TCAAGAAGGATGCGGAACGTGTACGCAGCAAGGCACTGCCGTGGGAGGAG
CGTATCCCACGTGCCGTCTTTCGGGGAAACGCCCGCAGCTGTATCTTGCC
TTGTGCACGCCTGTGGTCCAGCACCGATAACTGGAGAAGCTGCGGACGTA
CGCTGCTGTTCGATCTGGCCACGTCTGACCCCGAGTACGCTCGCGTCCTC
GATGTAGCCGTCGGCGGTGCGCCCACCCTGGTCGCCGTCTCTTGCCTCAG
CAGCGCAAACGTGCCGTTTCCCTTTTGGATGGAGCCGCGCACAGGGCCGT
TCGCGGATTGGGATGGGAACATCAAGAAGGATGCGGAACGTGTACGCAGC
AAGGCACTGCCGTGGGAGGAGCGTATCCCACGTGCCGTCTTTCGGGGAAA
CGCCCGCAGCTGTATCTTGCCTTGTGCACGCCTGTGGTCCAGCACCGATA
ACTGGAGAAGCTGCGGACGTACGCTGCTGTTCGATCTGGCCACGTCTGAC
CCCGAGTACGCTCGCGTCCTCGATGTAGCCGTCGGCGGTGCG
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