mRNA_M-pyrifera_M_contig126184.5282.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126184.5282.1
Unique NamemRNA_M-pyrifera_M_contig126184.5282.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: A0A6A7BQ72_9PLEO (DUF221-domain-containing protein n=1 Tax=Plenodomus tracheiphilus IPT5 TaxID=1408161 RepID=A0A6A7BQ72_9PLEO)

HSP 1 Score: 61.2 bits (147), Expect = 1.680e-8
Identity = 36/115 (31.30%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:   10 EPMHTNVEEFATSLYINLGLFTVMWAGFEAARICC----RGKMYDWRARNAPLAARVRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPV 342
            +P    V++  +S+Y  + +++ + +G      C        +Y  RA++A    R RA D KP  WL     + +  ++ T G+D++I  RF+R    +FLVL+VI CG+L+PV
Sbjct:   22 DPFQAQVQQ--SSIYAAI-VYSFVLSGLLVVVFCLLRPRNSNIYAPRAKHADEKHRPRALDKKPFSWLAAVKDVKEQDLVDTIGLDAVIFLRFMRMIRNIFLVLSVIGCGILIPV 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: E4ZTL8_LEPMJ (Similar to DUF221 domain protein n=1 Tax=Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) TaxID=985895 RepID=E4ZTL8_LEPMJ)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-7
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  124 MYDWRARNAPLAARVRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPVYAT 351
            +Y  RA++A    R R  D KP  WL     + + +++ T G+D++I  RF+R    +F++LT+I CG+L+PV  T
Sbjct:   61 IYAPRAKHADEKHRPRELDKKPFSWLTAVKDVKEQELVDTIGLDAVIFLRFIRMIRNIFVILTLIGCGILIPVNVT 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: A0A0S6XR21_BLOB1 (Uncharacterized protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XR21_BLOB1)

HSP 1 Score: 55.8 bits (133), Expect = 1.290e-6
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:  139 ARNAPLAARVRAPDP---KPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPVYATA 354
            A  A  A +   P P    PL W+G  +   ++Q+    G+D+ I  RF R + Y+FLVLT+I CG+L+PV   A
Sbjct:   65 APRAKYADKKHVPPPVAKHPLGWVGPVLKTRESQLAEILGLDATIFLRFARMNRYMFLVLTIIGCGILIPVNLVA 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: A0A177E3Z7_ALTAL (Uncharacterized protein n=10 Tax=Alternaria TaxID=5598 RepID=A0A177E3Z7_ALTAL)

HSP 1 Score: 55.1 bits (131), Expect = 2.410e-6
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  121 KMYDWRARNAPLAARVRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPV 342
            ++Y  RA++A    R +  D KP  WL    ++ + +++ T G+D+++  RFLR    +F+VLTV+  G+L+PV
Sbjct:   80 RVYAPRAKHADEKHRPKQLDKKPFSWLDAVKNVKEQELVDTIGLDAVVFLRFLRMIRDIFMVLTVVGVGILIPV 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: A0A5B8MJB8_9CHLO (Calcium-dependent channel protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJB8_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 2.430e-6
Identity = 30/86 (34.88%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  115 RGKMYDWRARNAPLAARVRAPD------PKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPVYATA 354
            R ++  +RAR A  A  V+ P        +   W+   + +SD  +L++AG+D+L+++RFL      FL ++V++CGVLLP++ TA
Sbjct:  169 RTRIKVYRARLASPATTVKPPKLPEGGVMQIFSWIPPVLKMSDQALLASAGLDALMYSRFLMLCVQFFLPVSVLSCGVLLPIHFTA 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: UPI001B388BC2 (DUF221-domain-containing protein n=1 Tax=Cucurbitaria berberidis CBS 394.84 TaxID=1168544 RepID=UPI001B388BC2)

HSP 1 Score: 53.1 bits (126), Expect = 1.130e-5
Identity = 25/73 (34.25%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  121 KMYDWRARNAPLAARVRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLP 339
            ++Y  RA++A    R      KP  WL     + ++ ++ T G+D+++  RF+R    +FLVLT+I CG+L+P
Sbjct:   60 RIYAPRAKHADEKHRPIPLGKKPFSWLTAVKDVKESDLVETVGLDAVVFLRFMRMLRNIFLVLTIIGCGILIP 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Match: A0A178EMG6_9PLEO (DUF221-domain-containing protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178EMG6_9PLEO)

HSP 1 Score: 51.2 bits (121), Expect = 5.360e-5
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  121 KMYDWRARNAPLAARVRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTVINCGVLLPV 342
            ++Y  RA++A    R      KP  WL   + + +  ++ T G+D+++  RF+R    +FLVLTV+ CG+L+PV
Sbjct:   61 RVYAPRAKHADEKHRPIPLGKKPFSWLA-AVKVKEQDLMDTIGLDAVVFLRFMRMIRNIFLVLTVVGCGILIPV 133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126184.5282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6A7BQ72_9PLEO1.680e-831.30DUF221-domain-containing protein n=1 Tax=Plenodomu... [more]
E4ZTL8_LEPMJ2.010e-736.84Similar to DUF221 domain protein n=1 Tax=Leptospha... [more]
A0A0S6XR21_BLOB11.290e-638.67Uncharacterized protein n=1 Tax=Fungal sp. (strain... [more]
A0A177E3Z7_ALTAL2.410e-635.14Uncharacterized protein n=10 Tax=Alternaria TaxID=... [more]
A0A5B8MJB8_9CHLO2.430e-634.88Calcium-dependent channel protein n=1 Tax=Chloropi... [more]
UPI001B388BC21.130e-534.25DUF221-domain-containing protein n=1 Tax=Cucurbita... [more]
A0A178EMG6_9PLEO5.360e-535.14DUF221-domain-containing protein n=1 Tax=Pyrenocha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126184contigM-pyrifera_M_contig126184:156..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.7573144-UTR-M-pyrifera_M_contig126184:155..1701622815776.7573144-UTR-M-pyrifera_M_contig126184:155..170Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126184 156..170 +
1692277564.3803473-UTR-M-pyrifera_M_contig126184:155..1701692277564.3803473-UTR-M-pyrifera_M_contig126184:155..170Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126184 156..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.7712464-CDS-M-pyrifera_M_contig126184:170..5091622815776.7712464-CDS-M-pyrifera_M_contig126184:170..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126184 171..509 +
1692277564.3889484-CDS-M-pyrifera_M_contig126184:170..5091692277564.3889484-CDS-M-pyrifera_M_contig126184:170..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126184 171..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126184.5282.1prot_M-pyrifera_M_contig126184.5282.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126184 171..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126184.5282.1

>prot_M-pyrifera_M_contig126184.5282.1 ID=prot_M-pyrifera_M_contig126184.5282.1|Name=mRNA_M-pyrifera_M_contig126184.5282.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MHTNVEEFATSLYINLGLFTVMWAGFEAARICCRGKMYDWRARNAPLAAR
VRAPDPKPLKWLGDTMSLSDTQMLSTAGVDSLIHARFLRASFYLFLVLTV
INCGVLLPVYATA
back to top

mRNA from alignment at M-pyrifera_M_contig126184:156..509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126184.5282.1 ID=mRNA_M-pyrifera_M_contig126184.5282.1|Name=mRNA_M-pyrifera_M_contig126184.5282.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig126184:156..509+ (Macrocystis pyrifera P11B4 male)
AATGCAACTGAGCCGATGCACACGAACGTGGAGGAGTTTGCCACTTCGCT
GTACATCAACTTGGGCTTGTTCACGGTGATGTGGGCAGGATTCGAGGCCG
CCCGCATCTGCTGCCGTGGCAAGATGTACGACTGGAGGGCCCGGAACGCG
CCCTTGGCTGCACGAGTACGCGCTCCGGACCCAAAGCCGCTGAAATGGCT
CGGCGATACCATGTCCCTGTCCGACACGCAGATGCTGTCCACTGCTGGCG
TGGACTCGCTCATCCACGCCCGCTTCCTCCGCGCCTCCTTCTACCTGTTC
CTTGTCCTCACCGTCATCAACTGTGGTGTGCTGCTGCCAGTCTATGCCAC
CGCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126184:156..509+

>mRNA_M-pyrifera_M_contig126184.5282.1 ID=mRNA_M-pyrifera_M_contig126184.5282.1|Name=mRNA_M-pyrifera_M_contig126184.5282.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig126184:156..509+ (Macrocystis pyrifera P11B4 male)
ATGCACACGAACGTGGAGGAGTTTGCCACTTCGCTGTACATCAACTTGGG
CTTGTTCACGGTGATGTGGGCAGGATTCGAGGCCGCCCGCATCTGCTGCC
GTGGCAAGATGTACGACTGGAGGGCCCGGAACGCGCCCTTGGCTGCACGA
GTACGCGCTCCGGACCCAAAGCCGCTGAAATGGCTCGGCGATACCATGTC
CCTGTCCGACACGCAGATGCTGTCCACTGCTGGCGTGGACTCGCTCATCC
ACGCCCGCTTCCTCCGCGCCTCCTTCTACCTGTTCCTTGTCCTCACCGTC
ATCAACTGTGGTGTGCTGCTGCCAGTCTATGCCACCGCTATGCACACGAA
CGTGGAGGAGTTTGCCACTTCGCTGTACATCAACTTGGGCTTGTTCACGG
TGATGTGGGCAGGATTCGAGGCCGCCCGCATCTGCTGCCGTGGCAAGATG
TACGACTGGAGGGCCCGGAACGCGCCCTTGGCTGCACGAGTACGCGCTCC
GGACCCAAAGCCGCTGAAATGGCTCGGCGATACCATGTCCCTGTCCGACA
CGCAGATGCTGTCCACTGCTGGCGTGGACTCGCTCATCCACGCCCGCTTC
CTCCGCGCCTCCTTCTACCTGTTCCTTGTCCTCACCGTCATCAACTGTGG
TGTGCTGCTGCCAGTCTATGCCACCGCT
back to top