mRNA_M-pyrifera_M_contig126169.5278.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126169.5278.1
Unique NamemRNA_M-pyrifera_M_contig126169.5278.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: A0A2B4SWW0_STYPI (Integrator complex subunit 6 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SWW0_STYPI)

HSP 1 Score: 99.8 bits (247), Expect = 1.400e-22
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLA 240
            DE V VLK  PTPKW+ +FE YL+T+P YY  PL+NA +R GI  + +PDH +S L +T+  YLKK+K+QSK+E +R+++
Sbjct:  482 DELVKVLKMKPTPKWKEKFESYLSTMPNYYAGPLRNAFRRMGIPPSFVPDHLDSFLSYTVVNYLKKVKQQSKMETERLIS 561          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: A0A3M6T659_POCDA (VWFA domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T659_POCDA)

HSP 1 Score: 99.8 bits (247), Expect = 1.420e-22
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLA 240
            DE V VLK  PTPKW+ +FE YL+T+P YY  PL+NA +R GI  + +PDH +S L +T+  YLKK+K+QSK+E +R+++
Sbjct:  463 DELVKVLKMKPTPKWKEKFENYLSTMPNYYAGPLRNAFRRMGIPPSFVPDHLDSFLSYTVVNYLKKVKQQSKMETERLIS 542          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: UPI0009E63ABA (integrator complex subunit 6-A-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E63ABA)

HSP 1 Score: 95.1 bits (235), Expect = 5.940e-21
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLA 240
            DE V V K  PT KW+ +FE YL+T+P YY  PL+NA +R GI   ++PDH +S L +T+  YLKK+K+QSK+E DR+++
Sbjct:  489 DELVKVHKMKPTAKWKEKFESYLSTMPNYYAGPLRNAFRRMGIPPNIVPDHLDSFLSYTVVNYLKKVKQQSKMETDRLIS 568          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: A7SQG0_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SQG0_NEMVE)

HSP 1 Score: 93.2 bits (230), Expect = 2.760e-20
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLAAMLQ 252
            DE V V K  P P+W+  FE YL   P YY  PL+NA KR G+ ++LIPDH +  L  TI  YLKK+K+Q K+EA+RM+  + Q
Sbjct:  408 DELVKVHKMKPVPRWKQAFEAYLDATPCYYAGPLRNAFKRMGLPISLIPDHIDGSLSATILNYLKKIKQQGKIEAERMVVLVTQ 491          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: UPI00138FE9C1 (integrator complex subunit 6 isoform X3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FE9C1)

HSP 1 Score: 93.2 bits (230), Expect = 2.800e-20
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLAAMLQ 252
            DE V V K  P P+W+  FE YL   P YY  PL+NA KR G+ ++LIPDH +  L  TI  YLKK+K+Q K+EA+RM+  + Q
Sbjct:  334 DELVKVHKMKPVPRWKQAFEAYLDATPCYYAGPLRNAFKRMGLPISLIPDHIDGSLSATILNYLKKIKQQGKIEAERMVVLVTQ 417          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: UPI00139022A0 (integrator complex subunit 6 isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139022A0)

HSP 1 Score: 93.2 bits (230), Expect = 2.810e-20
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLAAMLQ 252
            DE V V K  P P+W+  FE YL   P YY  PL+NA KR G+ ++LIPDH +  L  TI  YLKK+K+Q K+EA+RM+  + Q
Sbjct:  495 DELVKVHKMKPVPRWKQAFEAYLDATPCYYAGPLRNAFKRMGLPISLIPDHIDGSLSATILNYLKKIKQQGKIEAERMVVLVTQ 578          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: UPI001F04BFC1 (integrator complex subunit 6-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04BFC1)

HSP 1 Score: 92.4 bits (228), Expect = 5.240e-20
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAM-ALIPDHFESE--LPFTIQAYLKKLKEQSKVEADRMLAAM 246
            DE   VLK +PTPKWR  F++YL+ LP YY+ PL+ AL+R G  +  LIPDH ES   L  +IQ+YLKKLK+Q+KVEAD++L+ +
Sbjct:  444 DELFKVLKLSPTPKWRQLFDKYLSDLPSYYIVPLRTALRRMGANVNLLIPDHVESSSSLSNSIQSYLKKLKQQAKVEADKVLSGI 528          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: UPI001CF4FF6D (integrator complex subunit 6-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF4FF6D)

HSP 1 Score: 91.3 bits (225), Expect = 1.330e-19
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLA 240
            DE V V K  PT  W+ +F+ YL+T+P YY  PL+NA +R GI  A +PDH +S L +T+  YLKK+K+QSK+E +R+++
Sbjct:  483 DELVKVHKMKPTLAWKEKFDNYLSTMPNYYAGPLRNAFRRMGIPSAFVPDHLDSFLSYTVVNYLKKVKQQSKMETERLIS 562          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: A0A7S4HUR9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HUR9_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 1.170e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLAAM 246
            D+ +N++K  P+ KWR EFE Y+ ++PFYY +PL  ALKRFGI   ++PDH +  LP ++   LK LK+ SK E++R LAA+
Sbjct:  409 DDLLNMMKV-PSAKWRQEFEAYMNSIPFYYSQPLSKALKRFGITNNIVPDHLDGSLPTSVVTKLKHLKQMSKKESNRWLAAI 489          
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Match: C3ZE67_BRAFL (VWFA domain-containing protein (Fragment) n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZE67_BRAFL)

HSP 1 Score: 86.7 bits (213), Expect = 5.570e-18
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPDHFESELPFTIQAYLKKLKEQSKVEADRMLAAM 246
            DE   V K  P  KWR  F+ YL ++P YYM PLK AL+R G A  LIPDH +  L +++ +YLKKLK+Q+K+E+DR++A++
Sbjct:  403 DELFKVHKLKPNAKWRTAFDNYLKSMPSYYMGPLKAALRRMG-APQLIPDHLDMCLSYSVISYLKKLKQQAKLESDRIIASV 483          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126169.5278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2B4SWW0_STYPI1.400e-2252.50Integrator complex subunit 6 n=1 Tax=Stylophora pi... [more]
A0A3M6T659_POCDA1.420e-2252.50VWFA domain-containing protein n=2 Tax=Pocillopora... [more]
UPI0009E63ABA5.940e-2151.25integrator complex subunit 6-A-like n=1 Tax=Orbice... [more]
A7SQG0_NEMVE2.760e-2050.00Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI00138FE9C12.800e-2050.00integrator complex subunit 6 isoform X3 n=1 Tax=Ne... [more]
UPI00139022A02.810e-2050.00integrator complex subunit 6 isoform X1 n=1 Tax=Ne... [more]
UPI001F04BFC15.240e-2055.29integrator complex subunit 6-like n=1 Tax=Xenia sp... [more]
UPI001CF4FF6D1.330e-1948.75integrator complex subunit 6-like n=2 Tax=Acropora... [more]
A0A7S4HUR9_9EUKA1.170e-1848.78Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
C3ZE67_BRAFL5.570e-1850.00VWFA domain-containing protein (Fragment) n=6 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126169contigM-pyrifera_M_contig126169:97..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score93.2
Seed ortholog evalue6.2e-17
Seed eggNOG ortholog45351.EDO34072
Preferred nameSAGE1
KEGG koko:K13143,ko:K13180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032039,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.snRNA processing
EggNOG OGs38DP6@33154,3BFUW@33208,KOG3768@1,KOG3768@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.6186395-CDS-M-pyrifera_M_contig126169:96..3481622815776.6186395-CDS-M-pyrifera_M_contig126169:96..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126169 97..348 +
1692277564.3267884-CDS-M-pyrifera_M_contig126169:96..3481692277564.3267884-CDS-M-pyrifera_M_contig126169:96..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126169 97..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126169.5278.1prot_M-pyrifera_M_contig126169.5278.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126169 97..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126169.5278.1

>prot_M-pyrifera_M_contig126169.5278.1 ID=prot_M-pyrifera_M_contig126169.5278.1|Name=mRNA_M-pyrifera_M_contig126169.5278.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
DEFVNVLKFNPTPKWRNEFEQYLATLPFYYMKPLKNALKRFGIAMALIPD
HFESELPFTIQAYLKKLKEQSKVEADRMLAAMLQ
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mRNA from alignment at M-pyrifera_M_contig126169:97..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126169.5278.1 ID=mRNA_M-pyrifera_M_contig126169.5278.1|Name=mRNA_M-pyrifera_M_contig126169.5278.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig126169:97..348+ (Macrocystis pyrifera P11B4 male)
GACGAGTTCGTGAATGTGCTGAAGTTCAACCCAACGCCGAAGTGGCGCAA TGAGTTCGAGCAGTACCTCGCGACGCTGCCGTTCTACTACATGAAACCCC TCAAGAACGCTCTCAAGCGCTTCGGCATTGCCATGGCACTCATTCCTGAC CACTTCGAGTCAGAACTTCCCTTCACCATCCAGGCATACCTCAAGAAACT GAAGGAGCAGTCCAAGGTGGAGGCAGACCGCATGTTGGCTGCCATGCTCC AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126169:97..348+

>mRNA_M-pyrifera_M_contig126169.5278.1 ID=mRNA_M-pyrifera_M_contig126169.5278.1|Name=mRNA_M-pyrifera_M_contig126169.5278.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig126169:97..348+ (Macrocystis pyrifera P11B4 male)
GACGAGTTCGTGAATGTGCTGAAGTTCAACCCAACGCCGAAGTGGCGCAA
TGAGTTCGAGCAGTACCTCGCGACGCTGCCGTTCTACTACATGAAACCCC
TCAAGAACGCTCTCAAGCGCTTCGGCATTGCCATGGCACTCATTCCTGAC
CACTTCGAGTCAGAACTTCCCTTCACCATCCAGGCATACCTCAAGAAACT
GAAGGAGCAGTCCAAGGTGGAGGCAGACCGCATGTTGGCTGCCATGCTCC
AGGACGAGTTCGTGAATGTGCTGAAGTTCAACCCAACGCCGAAGTGGCGC
AATGAGTTCGAGCAGTACCTCGCGACGCTGCCGTTCTACTACATGAAACC
CCTCAAGAACGCTCTCAAGCGCTTCGGCATTGCCATGGCACTCATTCCTG
ACCACTTCGAGTCAGAACTTCCCTTCACCATCCAGGCATACCTCAAGAAA
CTGAAGGAGCAGTCCAAGGTGGAGGCAGACCGCATGTTGGCTGCCATGCT
CCAG
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