mRNA_M-pyrifera_M_contig126137.5271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126137.5271.1
Unique NamemRNA_M-pyrifera_M_contig126137.5271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126137.5271.1 vs. uniprot
Match: A0A6H5KE77_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE77_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.470e-19
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    7 KTGRLAVNGLLLRGKAVRAITRTGAFALPQ-DQEKGLTLAAGDVTKVDTLKEAFAGCGAVLFCASASK 207
            KTG+LAV GLL RG+ VRA+TRTG F+L   D    +T AAGDVTK DTLK+A AGCGAVLFCASASK
Sbjct:  116 KTGKLAVEGLLKRGRNVRAVTRTGEFSLRGGDGGDLMTTAAGDVTKTDTLKQALAGCGAVLFCASASK 183
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BLAST of mRNA_M-pyrifera_M_contig126137.5271.1 vs. uniprot
Match: K8EQV9_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQV9_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 2.810e-5
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 TGKTGRLAVNGLLLRGKAVRAITRTGAFA--LPQDQEKGLTLAAGDVTKVDTLKEAFAGCGAVLFCASAS 204
            TG+ G++ V  LLLRG  VRA+ R  +    LP + E    +  GDV+ +DT++EA  GC  +++CA AS
Sbjct:  103 TGRVGKVIVRKLLLRGYGVRALIRRESDKEFLPPNVE----VFVGDVSDLDTMREAVKGCAKIMYCARAS 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126137.5271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE77_9PHAE9.470e-1970.59NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
K8EQV9_9CHLO2.810e-541.43Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126137contigM-pyrifera_M_contig126137:134..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7G1A3
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_005240.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.342568-CDS-M-pyrifera_M_contig126137:133..4061622815776.342568-CDS-M-pyrifera_M_contig126137:133..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126137 134..406 -
1692277564.2033484-CDS-M-pyrifera_M_contig126137:133..4061692277564.2033484-CDS-M-pyrifera_M_contig126137:133..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126137 134..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126137.5271.1prot_M-pyrifera_M_contig126137.5271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126137 134..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126137.5271.1

>prot_M-pyrifera_M_contig126137.5271.1 ID=prot_M-pyrifera_M_contig126137.5271.1|Name=mRNA_M-pyrifera_M_contig126137.5271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
TGKTGRLAVNGLLLRGKAVRAITRTGAFALPQDQEKGLTLAAGDVTKVDT
LKEAFAGCGAVLFCASASKVRDKLNKGEGGGIRDGGGGVLD
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mRNA from alignment at M-pyrifera_M_contig126137:134..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126137.5271.1 ID=mRNA_M-pyrifera_M_contig126137.5271.1|Name=mRNA_M-pyrifera_M_contig126137.5271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig126137:134..406- (Macrocystis pyrifera P11B4 male)
ACAGGAAAGACAGGAAGGCTAGCTGTGAACGGGCTCTTGCTGCGCGGCAA
GGCCGTGAGGGCAATCACTAGGACCGGCGCCTTCGCTCTACCGCAAGACC
AGGAGAAAGGCCTGACCTTGGCGGCTGGAGACGTGACGAAGGTGGATACG
CTCAAGGAGGCGTTCGCTGGTTGCGGCGCTGTCTTATTCTGTGCCAGCGC
TAGCAAGGTGCGCGACAAGTTAAATAAGGGGGAAGGGGGGGGGATAAGGG
ACGGGGGGGGGGGGGTACTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126137:134..406-

>mRNA_M-pyrifera_M_contig126137.5271.1 ID=mRNA_M-pyrifera_M_contig126137.5271.1|Name=mRNA_M-pyrifera_M_contig126137.5271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig126137:134..406- (Macrocystis pyrifera P11B4 male)
ACAGGAAAGACAGGAAGGCTAGCTGTGAACGGGCTCTTGCTGCGCGGCAA
GGCCGTGAGGGCAATCACTAGGACCGGCGCCTTCGCTCTACCGCAAGACC
AGGAGAAAGGCCTGACCTTGGCGGCTGGAGACGTGACGAAGGTGGATACG
CTCAAGGAGGCGTTCGCTGGTTGCGGCGCTGTCTTATTCTGTGCCAGCGC
TAGCAAGGTGCGCGACAAGTTAAATAAGGGGGAAGGGGGGGGGATAAGGG
ACGGGGGGGGGGGGGTACTCGATACAGGAAAGACAGGAAGGCTAGCTGTG
AACGGGCTCTTGCTGCGCGGCAAGGCCGTGAGGGCAATCACTAGGACCGG
CGCCTTCGCTCTACCGCAAGACCAGGAGAAAGGCCTGACCTTGGCGGCTG
GAGACGTGACGAAGGTGGATACGCTCAAGGAGGCGTTCGCTGGTTGCGGC
GCTGTCTTATTCTGTGCCAGCGCTAGCAAGGTGCGCGACAAGTTAAATAA
GGGGGAAGGGGGGGGGATAAGGGACGGGGGGGGGGGGGTACTCGAT
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