mRNA_M-pyrifera_M_contig1261.5268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1261.5268.1
Unique NamemRNA_M-pyrifera_M_contig1261.5268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5268.1 vs. uniprot
Match: D7FJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS3_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.800e-48
Identity = 111/210 (52.86%), Postives = 125/210 (59.52%), Query Frame = 1 
Query:  418 MTPETRYEQLPEGVRKQIDDLATEIKRRGRKPQGQGEKGKHSDGFGWQRGVADEVSRTNPTHGLGLQAEIRQLRRDLLDLGNEQGTQQLALKELKGDADGTSKQAEVHGTFVVHRLHSQSGLNTVEQLPSDYMWEMVESFEKRLGEYAQAGGSPWEIDAIREQLSDEPLQGGEAAVAPYGQRARVTPDRLAFVIREQWKTFNQVSRCKLR 1047
            +TPETRY+QLPE VRKQID LA EIKR                    QRGVADEVSRTNPT GL +QA+IR+LRRDLLDLGNEQGTQ+LA+K+LK DA  TS+QAE                                                 EI A++ QLS+EPLQGGEA  APYGQRARVTP RLAFVIREQ KTFNQ  RC++R
Sbjct:  165 ITPETRYDQLPEVVRKQIDQLAEEIKR--------------------QRGVADEVSRTNPTDGLAVQAQIRELRRDLLDLGNEQGTQKLAMKDLKADAGKTSRQAE-------------------------------------------------EIHAMQVQLSEEPLQGGEAT-APYGQRARVTPGRLAFVIREQMKTFNQ--RCRIR 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5268.1 vs. uniprot
Match: A0A6H5KNK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.800e-10
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  904 QLSDEPLQGGEAAVAPYGQRARVTPDRLAFVIREQWKTFNQVS 1032
            QLS+EPLQGGEA  APYGQRARVTP RLAFVIREQ KTFNQ++
Sbjct:    4 QLSEEPLQGGEAP-APYGQRARVTPGRLAFVIREQMKTFNQIA 45
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1261.5268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJS3_ECTSI2.800e-4852.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNK5_9PHAE1.800e-1083.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1261contigM-pyrifera_M_contig1261:2178..4617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionNucleoporin FG repeat
Ec32 orthologEc-06_010380.1
Exons4
Model size1047
Cds size1047
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1261.5268.1prot_M-pyrifera_M_contig1261.5268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1261 2178..4617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.0465767-CDS-M-pyrifera_M_contig1261:2177..27341622815776.0465767-CDS-M-pyrifera_M_contig1261:2177..2734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 2178..2734 +
1692277563.9899445-CDS-M-pyrifera_M_contig1261:2177..27341692277563.9899445-CDS-M-pyrifera_M_contig1261:2177..2734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 2178..2734 +
1622815776.0604854-CDS-M-pyrifera_M_contig1261:3003..31181622815776.0604854-CDS-M-pyrifera_M_contig1261:3003..3118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 3004..3118 +
1692277564.0030851-CDS-M-pyrifera_M_contig1261:3003..31181692277564.0030851-CDS-M-pyrifera_M_contig1261:3003..3118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 3004..3118 +
1622815776.0744328-CDS-M-pyrifera_M_contig1261:3798..40081622815776.0744328-CDS-M-pyrifera_M_contig1261:3798..4008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 3799..4008 +
1692277564.0221725-CDS-M-pyrifera_M_contig1261:3798..40081692277564.0221725-CDS-M-pyrifera_M_contig1261:3798..4008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 3799..4008 +
1622815776.0868921-CDS-M-pyrifera_M_contig1261:4452..46171622815776.0868921-CDS-M-pyrifera_M_contig1261:4452..4617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 4453..4617 +
1692277564.0370097-CDS-M-pyrifera_M_contig1261:4452..46171692277564.0370097-CDS-M-pyrifera_M_contig1261:4452..4617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 4453..4617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1261.5268.1

>prot_M-pyrifera_M_contig1261.5268.1 ID=prot_M-pyrifera_M_contig1261.5268.1|Name=mRNA_M-pyrifera_M_contig1261.5268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=349bp
FSFGAPAPAPAAATTSLFGAAPAAAAPTPAAGSAFGFGSLTPAAPSNTSA
FGGGFGAPAAAPAPAAGGFFGAAAPAAAPATSGFGFGAAPAAAAPAAGAG
FGFKMAAPTAAATAAGAAPAFGAAAAAPGMPGAPGTAPEMTPETRYEQLP
EGVRKQIDDLATEIKRRGRKPQGQGEKGKHSDGFGWQRGVADEVSRTNPT
HGLGLQAEIRQLRRDLLDLGNEQGTQQLALKELKGDADGTSKQAEVHGTF
VVHRLHSQSGLNTVEQLPSDYMWEMVESFEKRLGEYAQAGGSPWEIDAIR
EQLSDEPLQGGEAAVAPYGQRARVTPDRLAFVIREQWKTFNQVSRCKLR
back to top

mRNA from alignment at M-pyrifera_M_contig1261:2178..4617+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1261.5268.1 ID=mRNA_M-pyrifera_M_contig1261.5268.1|Name=mRNA_M-pyrifera_M_contig1261.5268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2440bp|location=Sequence derived from alignment at M-pyrifera_M_contig1261:2178..4617+ (Macrocystis pyrifera P11B4 male)
TTTAGTTTCGGAGCCCCGGCACCAGCACCGGCAGCGGCCACCACAAGCCT
TTTCGGAGCCGCACCAGCAGCCGCCGCCCCCACCCCCGCCGCTGGGTCGG
CCTTCGGGTTCGGTTCTCTGACCCCCGCCGCGCCGAGCAATACCTCAGCA
TTCGGCGGCGGATTCGGTGCACCTGCTGCCGCGCCGGCGCCAGCAGCGGG
CGGTTTTTTTGGCGCTGCGGCCCCCGCTGCCGCCCCCGCGACTTCCGGGT
TTGGCTTCGGTGCCGCACCTGCCGCTGCCGCGCCAGCCGCCGGTGCTGGT
TTTGGGTTTAAGATGGCGGCGCCGACGGCGGCTGCTACTGCTGCTGGCGC
GGCGCCAGCATTTGGAGCGGCGGCCGCGGCTCCAGGGATGCCCGGGGCGC
CGGGGACGGCACCGGAGATGACCCCGGAGACTCGGTACGAGCAGCTCCCG
GAGGGCGTGAGGAAGCAGATCGACGACCTTGCGACGGAGATCAAGAGGCG
AGGAAGAAAGCCTCAGGGGCAAGGGGAGAAGGGGAAGCATTCTGATGGTT
TCGGTTGGTTCTGAACTCTAGCTTTTCTGTGCGGATTAGTCTAGATTCCT
TCGGTTTTGAGCTGTCTTACTTTATCCCTTTGGCACCATTTGACGTGTCA
TCTCGCCCTGTCGCCGGAGACTAAGGACACTTGGGCACGGGCCGTCGTGC
TGTTAGGTTTGCCGCGCAGCTGCCACATCGTAGCCCTGTCGAAGAAGTGA
TACGTATGTTGTCTCCTCCTCCTTGGTGCTTAATACTACTCTTGACGGAT
GCCCCCCCCCCCCTTTCGTGCCTCAGGCAAAGAGGCGTGGCGGACGAGGT
CAGCCGAACCAATCCGACGCATGGGCTGGGGCTTCAGGCGGAGATACGCC
AGCTACGGAGAGACCTGTTAGACCTTGGGAACGAGCAAGGGGTACGAAGC
GGTCTATAGTCGCGAATTTTACTTGCCTAATGCAACGCACGTAGTGATAT
TCCCTGCTCGATGCTCCGCAATGATGTCTTCAATAGTGTCACGATGGTAT
TTTATGCCTTGCTTGATGTTGTATTTTGTCATTTGTAGACTTTTCATTTG
CTCATTTAGTGTCGGATGCTATGATGATATCTATGGATCAATCCTTTTGT
GATGCTGTAGTGGGTAATTTTTTCGCTCGTGCAGTGTCGGATGCTTTGAT
GCTATATAATCGCATAGGCAGTTACGGGTAATGTCGTCGGCTCGTTTAAG
CTGATGAGTACAACTCGAACTTTGGTCCCTGCTACTGTAGCTATAGAGGT
TCAGACCTCGTGTCGGGCCTGCCGAAAGATGTGCTCATACCCGAAGTGTA
ACTTACCACTCCGGCCCTCCCCGCGAAGCCTGCTCGACAGTCCACCGTCT
GTATATCGCACGCATCGCGGGAATGTTTTGACCAGCCCGTTAGCATGTGG
CGGTGCCTTCTATTCAAAGATTCCGCCACCGCCGCGACTGCCGCCTGTTC
GTCTACCCCTTAGACATATTGGAGCCTGTCTTCTGACCGCGGGCTAGGTT
ATTGCGATGAGTTAATTTGAAAACAACAACAATTAACCTTACCCCCTTCC
CTCCATACCTCTTTTTGGCAGACCCAACAGCTTGCCCTGAAGGAGCTCAA
GGGCGACGCGGACGGTACGTCGAAGCAGGCCGAGGTGCACGGGACGTTCG
TGGTGCATCGGCTGCATAGCCAATCGGGGCTCAACACGGTGGAGCAGCTA
CCGAGCGACTACATGTGGGAGATGGTGGAGAGCTTCGAGAAGCGCCTCGG
CGAGTACGCGCAGGCAGGTGGCTCTCCTTGGGTGGCGCTACGTAACCCTT
ACTCGACCTCCATCCCTCCGCCTCCCCTAAACCCTGACCTGCCCCTAACC
CGATCCTAAATATAACCCACTCCAACTTTATCCCTAACTCGTTAAAGCGG
TCTCGCCGATGCGCCTACGTCGGGACCGGGGGTCTTCTTTGGTGTTTTGG
CTGAGGTCAGGGTTGATTGGGTAAGGGGGCCAGGCGACGTTGCAGCCGTG
GTCATGTGATGCCCTCGCTATACTTGAGGCGCAGGAGGCGTCGATCTCGG
GAACAAGGAATGGACAGACCTTGTTTTTTCTCTCGAGACCCGCCTGGCCC
AACCCCGGCAGTAGAGCACGAGGAGGTCGTAGTCAGTAGCTCGGTCGGCC
GTTAAGAAACCTGGAAAAGTCCTCTTGACTATCTGCCCCCCTTTTTTTAA
TTTGTCGGCCGGCCGTCTCCCGCAGGAAATCGACGCGATAAGGGAGCAGC
TTTCTGACGAGCCGCTGCAGGGGGGCGAGGCCGCGGTGGCACCGTACGGA
CAGCGCGCGCGGGTGACTCCCGACCGGCTAGCCTTCGTAATCCGAGAGCA
GTGGAAGACGTTCAACCAGGTAAGCAGGTGCAAGCTGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1261:2178..4617+

>mRNA_M-pyrifera_M_contig1261.5268.1 ID=mRNA_M-pyrifera_M_contig1261.5268.1|Name=mRNA_M-pyrifera_M_contig1261.5268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2094bp|location=Sequence derived from alignment at M-pyrifera_M_contig1261:2178..4617+ (Macrocystis pyrifera P11B4 male)
TTTAGTTTCGGAGCCCCGGCACCAGCACCGGCAGCGGCCACCACAAGCCT
TTTCGGAGCCGCACCAGCAGCCGCCGCCCCCACCCCCGCCGCTGGGTCGG
CCTTCGGGTTCGGTTCTCTGACCCCCGCCGCGCCGAGCAATACCTCAGCA
TTCGGCGGCGGATTCGGTGCACCTGCTGCCGCGCCGGCGCCAGCAGCGGG
CGGTTTTTTTGGCGCTGCGGCCCCCGCTGCCGCCCCCGCGACTTCCGGGT
TTGGCTTCGGTGCCGCACCTGCCGCTGCCGCGCCAGCCGCCGGTGCTGGT
TTTGGGTTTAAGATGGCGGCGCCGACGGCGGCTGCTACTGCTGCTGGCGC
GGCGCCAGCATTTGGAGCGGCGGCCGCGGCTCCAGGGATGCCCGGGGCGC
CGGGGACGGCACCGGAGATGACCCCGGAGACTCGGTACGAGCAGCTCCCG
GAGGGCGTGAGGAAGCAGATCGACGACCTTGCGACGGAGATCAAGAGGCG
AGGAAGAAAGCCTCAGGGGCAAGGGGAGAAGGGGAAGCATTCTGATGGTT
TCGGTTGTTTAGTTTCGGAGCCCCGGCACCAGCACCGGCAGCGGCCACCA
CAAGCCTTTTCGGAGCCGCACCAGCAGCCGCCGCCCCCACCCCCGCCGCT
GGGTCGGCCTTCGGGTTCGGTTCTCTGACCCCCGCCGCGCCGAGCAATAC
CTCAGCATTCGGCGGCGGATTCGGTGCACCTGCTGCCGCGCCGGCGCCAG
CAGCGGGCGGTTTTTTTGGCGCTGCGGCCCCCGCTGCCGCCCCCGCGACT
TCCGGGTTTGGCTTCGGTGCCGCACCTGCCGCTGCCGCGCCAGCCGCCGG
TGCTGGTTTTGGGTTTAAGATGGCGGCGCCGACGGCGGCTGCTACTGCTG
CTGGCGCGGCGCCAGCATTTGGAGCGGCGGCCGCGGCTCCAGGGATGCCC
GGGGCGCCGGGGACGGCACCGGAGATGACCCCGGAGACTCGGTACGAGCA
GCTCCCGGAGGGCGTGAGGAAGCAGATCGACGACCTTGCGACGGAGATCA
AGAGGCGAGGAAGAAAGCCTCAGGGGCAAGGGGAGAAGGGGAAGCATTCT
GATGGTTTCGGTTGGCAAAGAGGCGTGGCGGACGAGGTCAGCCGAACCAA
TCCGACGCATGGGCTGGGGCTTCAGGCGGAGATACGCCAGCTACGGAGAG
ACCTGTTAGACCTTGGGAACGAGCAAGGGGCAAAGAGGCGTGGCGGACGA
GGTCAGCCGAACCAATCCGACGCATGGGCTGGGGCTTCAGGCGGAGATAC
GCCAGCTACGGAGAGACCTGTTAGACCTTGGGAACGAGCAAGGGACCCAA
CAGCTTGCCCTGAAGGAGCTCAAGGGCGACGCGGACGGTACGTCGAAGCA
GGCCGAGGTGCACGGGACGTTCGTGGTGCATCGGCTGCATAGCCAATCGG
GGCTCAACACGGTGGAGCAGCTACCGAGCGACTACATGTGGGAGATGGTG
GAGAGCTTCGAGAAGCGCCTCGGCGAGTACGCGCAGGCAGGTGGCTCTCC
TTGGACCCAACAGCTTGCCCTGAAGGAGCTCAAGGGCGACGCGGACGGTA
CGTCGAAGCAGGCCGAGGTGCACGGGACGTTCGTGGTGCATCGGCTGCAT
AGCCAATCGGGGCTCAACACGGTGGAGCAGCTACCGAGCGACTACATGTG
GGAGATGGTGGAGAGCTTCGAGAAGCGCCTCGGCGAGTACGCGCAGGCAG
GTGGCTCTCCTTGGGAAATCGACGCGATAAGGGAGCAGCTTTCTGACGAG
CCGCTGCAGGGGGGCGAGGCCGCGGTGGCACCGTACGGACAGCGCGCGCG
GGTGACTCCCGACCGGCTAGCCTTCGTAATCCGAGAGCAGTGGAAGACGT
TCAACCAGGTAAGCAGGTGCAAGCTGCGCGAAATCGACGCGATAAGGGAG
CAGCTTTCTGACGAGCCGCTGCAGGGGGGCGAGGCCGCGGTGGCACCGTA
CGGACAGCGCGCGCGGGTGACTCCCGACCGGCTAGCCTTCGTAATCCGAG
AGCAGTGGAAGACGTTCAACCAGGTAAGCAGGTGCAAGCTGCGC
back to top