mRNA_M-pyrifera_M_contig126065.5265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126065.5265.1
Unique NamemRNA_M-pyrifera_M_contig126065.5265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A7S1GB03_9STRA (Protein-serine/threonine phosphatase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB03_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.000e-28
Identity = 57/107 (53.27%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 SCLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYVR 321
            +C +D  AM+ + S+ YG    TKPLP LW +FP    PA TIM DD RRNFL+N  +GLRIK C++LP+TR  D EL  L  YLL I  L  F  L HRRW+ YVR
Sbjct:  234 ACFMDHGAMITVKSADYGL-FNTKPLPVLWGQFPEFASPANTIMFDDLRRNFLMNPDNGLRIKACRNLPVTRSEDRELLRLTEYLLLIKDLDTFEGLDHRRWKDYVR 339          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A150GDT8_GONPE (Protein-serine/threonine phosphatase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDT8_GONPE)

HSP 1 Score: 106 bits (265), Expect = 1.090e-25
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 CLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            CL+D  AMV + + KYG     KPL F+W+KFP    PA TIMLDD +RN+++N + GL I+P +   LTR TD EL  L+ YL AIAPL    +L H RW  Y+
Sbjct:  190 CLMDHTAMVTVHTDKYGV-FDCKPLQFVWEKFPGQYTPANTIMLDDLKRNYIMNPQQGLVIRPFRKAHLTRGTDRELLGLRAYLAAIAPLDSLEALDHNRWERYL 293          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: C1MZ49_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MZ49_MICPC)

HSP 1 Score: 106 bits (264), Expect = 1.740e-25
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    7 LVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            LVD  AM+ + + KYG     KPL +LW KF        TIM DD RRNF++N ++GL+I+P +   +   TDVELR+L  YLLAIAPLPDF  L+H RW +Y+
Sbjct:  211 LVDHGAMITVHTEKYGV-FDCKPLGWLWAKFDGRYGEHNTIMFDDLRRNFVMNPKNGLKIRPFRKAHMNMATDVELRELTKYLLAIAPLPDFGVLRHSRWESYI 313          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: UPI00140304C5 (ubiquitin-like domain-containing CTD phosphatase 1 isoform X1 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140304C5)

HSP 1 Score: 105 bits (261), Expect = 5.290e-25
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 SCLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAY 315
            S ++D  AM+ +F+ KYG  +  KPL  +W KFP    P  TIMLDD RRNFL+N ++GL+IKP     +TRETD EL  L  YLL IA L DF+SL H+ W  Y
Sbjct:  212 SFMLDSAAMITVFTPKYGV-VEVKPLGVIWGKFPDVYGPGNTIMLDDIRRNFLMNPQNGLKIKPFMKAHVTRETDRELVKLSKYLLKIAQLDDFTSLNHKHWERY 315          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A835XLG6_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLG6_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 7.520e-25
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 SCLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            +CL+D  AMV + + KYG     KPL F+W KFP    PA TIMLDD +RN+++N + GL I+P +   LTR TD EL+ L  YL +IAPL    +L H RW  Y+
Sbjct:  214 TCLLDHTAMVTVCTDKYGV-FDCKPLQFIWDKFPGQYTPANTIMLDDLKRNYIMNPQQGLVIRPFRKAHLTRGTDRELKGLTAYLASIAPLDSLEALDHGRWERYL 318          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A150GDU8_GONPE (FCP1 homology domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDU8_GONPE)

HSP 1 Score: 106 bits (265), Expect = 1.170e-24
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 CLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            CL+D  AMV + + KYG     KPL F+W+KFP    PA TIMLDD +RN+++N + GL I+P +   LTR TD EL  L+ YL AIAPL    +L H RW  Y+
Sbjct:  480 CLMDHTAMVTVHTDKYGV-FDCKPLQFVWEKFPGQYTPANTIMLDDLKRNYIMNPQQGLVIRPFRKAHLTRGTDRELLGLRAYLAAIAPLDSLEALDHNRWERYL 583          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: D8UJR9_VOLCA (Protein-serine/threonine phosphatase n=3 Tax=Volvox TaxID=3066 RepID=D8UJR9_VOLCA)

HSP 1 Score: 101 bits (251), Expect = 1.100e-23
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    4 CLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            CL+D  AMV + + KYG     KPL F+W+KFP     A TIMLDD +RN+++N + GL I+P +   LTR +D EL  L  YL AIAPL     L H RW  Y+
Sbjct:  193 CLLDHTAMVTVHTEKYGV-FDCKPLQFIWEKFPGQYTEANTIMLDDLKRNYIMNPQQGLVIRPFRKAHLTRGSDRELLGLMAYLAAIAPLDSLEELDHSRWERYI 296          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A835WQI3_9CHLO (Protein-serine/threonine phosphatase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WQI3_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 2.680e-23
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 CLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            CL+D  AMV + + KYG     KPL F+W+KFP    P  TIMLDD +RN+++N + GL I+P +   LTR TD EL  L  YL AIAPL   ++L H RW  ++
Sbjct:  213 CLLDHTAMVTVHTDKYGV-FDCKPLQFIWEKFPGQYTPDNTIMLDDLKRNYIMNPQQGLVIRPFRKAHLTRGTDRELVGLTRYLAAIAPLDSLAALDHNRWERWL 316          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: E1ZGY2_CHLVA (Protein-serine/threonine phosphatase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGY2_CHLVA)

HSP 1 Score: 99.0 bits (245), Expect = 1.740e-22
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 SCLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYVR 321
            +C++D  AM+ +   KYG     KPL FLW KFP H     TIM+DD RRN++LN+++GL I+P K   LTR TD EL  L  YL  IA L   + L HR W +Y +
Sbjct:  223 TCMLDHRAMLTVQHPKYGL-FDCKPLQFLWAKFPEHYGAHNTIMMDDLRRNYVLNKQNGLVIRPFKKAHLTRATDRELLYLTAYLQKIAALDSLAGLNHRHWESYAK 328          
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Match: A0A8J9S4T0_9CHLO (Ubiquitin-like domain-containing CTD phosphatase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S4T0_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.800e-22
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 SCLVDKNAMVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRHGLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYV 318
            +  +D   MV + ++KYG     KPLP LW K P +  P  TIM DD RRN+  N ++GL I+P K   L R TD EL  LKIYLL IA L  F++LKH+RW  Y+
Sbjct:  158 TAFMDHKCMVTIQTAKYGV-FDCKPLPVLWAKIPEY-TPENTIMFDDLRRNYAFNPQNGLVIRPYKRAHLNRSTDKELLYLKIYLLKIANLESFATLKHKRWERYI 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126065.5265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GB03_9STRA5.000e-2853.27Protein-serine/threonine phosphatase n=1 Tax=Bicos... [more]
A0A150GDT8_GONPE1.090e-2549.52Protein-serine/threonine phosphatase n=1 Tax=Goniu... [more]
C1MZ49_MICPC1.740e-2550.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
UPI00140304C55.290e-2551.43ubiquitin-like domain-containing CTD phosphatase 1... [more]
A0A835XLG6_9CHLO7.520e-2548.11Protein-serine/threonine phosphatase n=1 Tax=Edaph... [more]
A0A150GDU8_GONPE1.170e-2449.52FCP1 homology domain-containing protein n=1 Tax=Go... [more]
D8UJR9_VOLCA1.100e-2347.62Protein-serine/threonine phosphatase n=3 Tax=Volvo... [more]
A0A835WQI3_9CHLO2.680e-2347.62Protein-serine/threonine phosphatase n=3 Tax=Chlam... [more]
E1ZGY2_CHLVA1.740e-2246.73Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
A0A8J9S4T0_9CHLO1.800e-2248.11Ubiquitin-like domain-containing CTD phosphatase 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126065contigM-pyrifera_M_contig126065:61..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue6e-19
Seed eggNOG ortholog38833.XP_003060895.1
KEGG koko:K17618
Hectar predicted targeting categoryother localisation
EggNOG free text desc.catalytic domain of ctd-like phosphatases
EggNOG OGs34JRG@3041,37KWT@33090,COG5190@1,KOG1605@2759,KOG1872@1,KOG1872@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons1
Model size321
Cds size297
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.92507-UTR-M-pyrifera_M_contig126065:60..841622815775.92507-UTR-M-pyrifera_M_contig126065:60..84Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126065 61..84 +
1692277563.9360025-UTR-M-pyrifera_M_contig126065:60..841692277563.9360025-UTR-M-pyrifera_M_contig126065:60..84Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126065 61..84 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.9390666-CDS-M-pyrifera_M_contig126065:84..3811622815775.9390666-CDS-M-pyrifera_M_contig126065:84..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126065 85..381 +
1692277563.9492135-CDS-M-pyrifera_M_contig126065:84..3811692277563.9492135-CDS-M-pyrifera_M_contig126065:84..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126065 85..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126065.5265.1prot_M-pyrifera_M_contig126065.5265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126065 85..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126065.5265.1

>prot_M-pyrifera_M_contig126065.5265.1 ID=prot_M-pyrifera_M_contig126065.5265.1|Name=mRNA_M-pyrifera_M_contig126065.5265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MVPLFSSKYGKNLMTKPLPFLWKKFPTHIVPAKTIMLDDCRRNFLLNRRH
GLRIKPCKDLPLTRETDVELRDLKIYLLAIAPLPDFSSLKHRRWRAYVR
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mRNA from alignment at M-pyrifera_M_contig126065:61..381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126065.5265.1 ID=mRNA_M-pyrifera_M_contig126065.5265.1|Name=mRNA_M-pyrifera_M_contig126065.5265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig126065:61..381+ (Macrocystis pyrifera P11B4 male)
TCGTGTCTTGTGGACAAGAATGCCATGGTTCCGTTGTTTTCGTCAAAGTA TGGCAAGAACCTGATGACAAAGCCACTGCCTTTCTTGTGGAAAAAGTTCC CCACTCACATCGTACCGGCAAAGACAATAATGCTGGATGATTGTCGCAGG AATTTCTTACTCAACCGAAGGCATGGACTTCGAATCAAGCCATGCAAAGA TTTGCCGTTAACGAGAGAAACCGATGTTGAATTACGAGATCTCAAGATCT ACCTCCTTGCCATTGCTCCATTGCCCGACTTTTCCTCTCTCAAGCATCGC AGGTGGAGAGCATACGTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126065:61..381+

>mRNA_M-pyrifera_M_contig126065.5265.1 ID=mRNA_M-pyrifera_M_contig126065.5265.1|Name=mRNA_M-pyrifera_M_contig126065.5265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig126065:61..381+ (Macrocystis pyrifera P11B4 male)
ATGGTTCCGTTGTTTTCGTCAAAGTATGGCAAGAACCTGATGACAAAGCC
ACTGCCTTTCTTGTGGAAAAAGTTCCCCACTCACATCGTACCGGCAAAGA
CAATAATGCTGGATGATTGTCGCAGGAATTTCTTACTCAACCGAAGGCAT
GGACTTCGAATCAAGCCATGCAAAGATTTGCCGTTAACGAGAGAAACCGA
TGTTGAATTACGAGATCTCAAGATCTACCTCCTTGCCATTGCTCCATTGC
CCGACTTTTCCTCTCTCAAGCATCGCAGGTGGAGAGCATACGTACGCATG
GTTCCGTTGTTTTCGTCAAAGTATGGCAAGAACCTGATGACAAAGCCACT
GCCTTTCTTGTGGAAAAAGTTCCCCACTCACATCGTACCGGCAAAGACAA
TAATGCTGGATGATTGTCGCAGGAATTTCTTACTCAACCGAAGGCATGGA
CTTCGAATCAAGCCATGCAAAGATTTGCCGTTAACGAGAGAAACCGATGT
TGAATTACGAGATCTCAAGATCTACCTCCTTGCCATTGCTCCATTGCCCG
ACTTTTCCTCTCTCAAGCATCGCAGGTGGAGAGCATACGTACGC
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