mRNA_M-pyrifera_M_contig126061.5263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126061.5263.1
Unique NamemRNA_M-pyrifera_M_contig126061.5263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A2E7K6E8_9PLAN (Big_5 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K6E8_9PLAN)

HSP 1 Score: 163 bits (413), Expect = 1.500e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE 222
            ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE
Sbjct:  217 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE 290          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A518A3Y7_9PLAN (Big_5 domain-containing protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3Y7_9PLAN)

HSP 1 Score: 147 bits (372), Expect = 6.500e-41
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE 222
            +RMWAVVQIS E FPK+GKGIHYLDD+RTCVIPVDLEP KTYV+WFNRGR+NSFRDTENNPA+PYLLVFKT+S+
Sbjct:  380 DRMWAVVQISQEMFPKIGKGIHYLDDRRTCVIPVDLEPGKTYVMWFNRGRYNSFRDTENNPAVPYLLVFKTKSK 453          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A517RLH1_9PLAN (Big_5 domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RLH1_9PLAN)

HSP 1 Score: 138 bits (347), Expect = 1.350e-38
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE 222
            +RMWAVVQIS   FPK  KGIHYLDD+RTCVIPVDLEP K YV+WFNRGR+NSFRDTENNPA+PYLLVFKT+S+
Sbjct:  220 DRMWAVVQISKALFPKTRKGIHYLDDQRTCVIPVDLEPGKMYVMWFNRGRYNSFRDTENNPAVPYLLVFKTKSK 293          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A0S7Y1A7_9DELT (Big_5 domain-containing protein n=1 Tax=Syntrophobacter sp. DG_60 TaxID=1703361 RepID=A0A0S7Y1A7_9DELT)

HSP 1 Score: 112 bits (280), Expect = 1.350e-29
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            ++MW+ V+ S E FPK+   I YL+DKRTCV PV LEP KTYV+WFN  +FNSFRD +NNPAIPYLLVF+TR
Sbjct:  121 QQMWSWVKFSDETFPKITGEIRYLEDKRTCVAPVKLEPGKTYVIWFNSSKFNSFRDEDNNPAIPYLLVFQTR 192          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A7Y4QPT7_9BACT (Big_5 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4QPT7_9BACT)

HSP 1 Score: 110 bits (274), Expect = 2.590e-29
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 RMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            RMW++ QIS E FP+    IHY D+ RTCV+PV LEP KTYVLWFNR +FNSFRDTE++P +PYLLVF+TR
Sbjct:   70 RMWSICQISKESFPETAGQIHYKDN-RTCVMPVKLEPGKTYVLWFNRAQFNSFRDTESHPTVPYLLVFETR 139          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A6C2UCK6_9BACT (Big_5 domain-containing protein n=1 Tax=Pontiella desulfatans TaxID=2750659 RepID=A0A6C2UCK6_9BACT)

HSP 1 Score: 102 bits (255), Expect = 1.770e-26
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTRSE 222
            E+MW+V QISSEH+PK  K + Y D  RT V PV L+P KTYV+WFNR ++NSFRDT N PA+PY LVFKT+ +
Sbjct:   64 EKMWSVCQISSEHYPKRRKDLFYRDG-RTFVFPVILKPGKTYVMWFNRAQYNSFRDTGNRPAVPYQLVFKTKDK 136          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A7X9DTG6_9DELT (Ig-like domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9DTG6_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 5.480e-22
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            E+ W+ VQ+S E +PK      Y+D KRT V+PV LEP +TY++W N+ +F+ FRD EN PA+PYLLVF+TR
Sbjct:   65 EKSWSFVQVSKESYPKTTGEPRYID-KRTVVLPVALEPGRTYIIWLNQKKFSGFRDLENYPAVPYLLVFETR 135          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A7C4PW83_9DELT (Big_5 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4PW83_9DELT)

HSP 1 Score: 90.9 bits (224), Expect = 1.100e-21
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            E+ W+ VQ+S + +PK      Y+D KRT V+PV LEP KTY++W N+ +F  FRD EN PA+PYLLVF+TR
Sbjct:   65 EKNWSFVQVSKDSYPKTTGEPRYID-KRTIVLPVALEPGKTYIIWLNQKKFTGFRDLENYPAVPYLLVFETR 135          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A2Z3HDT9_9BACT (Big_5 domain-containing protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3HDT9_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 3.500e-21
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 ERMWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            ++ W+   +S E FPK+     YL DKRTCV+PV LEP KTY +W N  +F +F+D ++  A+PYLLVFKT+
Sbjct:   63 DKSWSWATVSEESFPKLDGKPKYLADKRTCVLPVKLEPGKTYAIWVNSEKFGNFKDADDRSAVPYLLVFKTK 134          
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Match: A0A177R604_9PLAN (Big_5 domain-containing protein n=1 Tax=Planctomycetaceae bacterium SCGC AG-212-F19 TaxID=1799658 RepID=A0A177R604_9PLAN)

HSP 1 Score: 89.0 bits (219), Expect = 4.970e-21
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   10 WAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFNSFRDTENNPAIPYLLVFKTR 216
            W+   IS E FP V     YL DKRTCV+PV LEP KTY +W N  +F  F+DT+   A+PYLLVFKT+
Sbjct:   66 WSWAMISKESFPTVDGKPKYLADKRTCVLPVKLEPGKTYAIWVNSEKFRDFKDTDGRSAVPYLLVFKTK 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126061.5263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K6E8_9PLAN1.500e-48100.00Big_5 domain-containing protein n=6 Tax=Gimesia Ta... [more]
A0A518A3Y7_9PLAN6.500e-4185.14Big_5 domain-containing protein n=1 Tax=Gimesia pa... [more]
A0A517RLH1_9PLAN1.350e-3881.08Big_5 domain-containing protein n=1 Tax=Gimesia al... [more]
A0A0S7Y1A7_9DELT1.350e-2966.67Big_5 domain-containing protein n=1 Tax=Syntrophob... [more]
A0A7Y4QPT7_9BACT2.590e-2967.61Big_5 domain-containing protein n=1 Tax=Verrucomic... [more]
A0A6C2UCK6_9BACT1.770e-2662.16Big_5 domain-containing protein n=1 Tax=Pontiella ... [more]
A0A7X9DTG6_9DELT5.480e-2254.17Ig-like domain-containing protein n=1 Tax=Myxococc... [more]
A0A7C4PW83_9DELT1.100e-2154.17Big_5 domain-containing protein n=1 Tax=Deltaprote... [more]
A0A2Z3HDT9_9BACT3.500e-2150.00Big_5 domain-containing protein n=1 Tax=Gemmata ob... [more]
A0A177R604_9PLAN4.970e-2155.07Big_5 domain-containing protein n=1 Tax=Planctomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126061contigM-pyrifera_M_contig126061:287..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue6.2e-13
Seed eggNOG ortholog886293.Sinac_4894
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the sigma-70 factor family. ECF subfamily
EggNOG OGs2J3UT@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size225
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.8070157-CDS-M-pyrifera_M_contig126061:286..5051622815775.8070157-CDS-M-pyrifera_M_contig126061:286..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126061 287..505 -
1692277563.9003356-CDS-M-pyrifera_M_contig126061:286..5051692277563.9003356-CDS-M-pyrifera_M_contig126061:286..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126061 287..505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.8222013-UTR-M-pyrifera_M_contig126061:505..5111622815775.8222013-UTR-M-pyrifera_M_contig126061:505..511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126061 506..511 -
1692277563.911048-UTR-M-pyrifera_M_contig126061:505..5111692277563.911048-UTR-M-pyrifera_M_contig126061:505..511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126061 506..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126061.5263.1prot_M-pyrifera_M_contig126061.5263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126061 287..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126061.5263.1

>prot_M-pyrifera_M_contig126061.5263.1 ID=prot_M-pyrifera_M_contig126061.5263.1|Name=mRNA_M-pyrifera_M_contig126061.5263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MWAVVQISSEHFPKVGKGIHYLDDKRTCVIPVDLEPDKTYVLWFNRGRFN
SFRDTENNPAIPYLLVFKTRSE*
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mRNA from alignment at M-pyrifera_M_contig126061:287..511-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126061.5263.1 ID=mRNA_M-pyrifera_M_contig126061.5263.1|Name=mRNA_M-pyrifera_M_contig126061.5263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig126061:287..511- (Macrocystis pyrifera P11B4 male)
GAACGGATGTGGGCCGTCGTGCAGATCTCGTCGGAACACTTCCCTAAGGT TGGCAAGGGAATTCATTACCTGGATGACAAACGCACGTGCGTGATTCCCG TCGACCTGGAACCGGACAAGACGTACGTGCTGTGGTTCAATCGGGGACGC TTTAACAGTTTTCGCGATACCGAAAATAACCCCGCGATTCCGTATCTGCT CGTGTTCAAAACACGATCTGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126061:287..511-

>mRNA_M-pyrifera_M_contig126061.5263.1 ID=mRNA_M-pyrifera_M_contig126061.5263.1|Name=mRNA_M-pyrifera_M_contig126061.5263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig126061:287..511- (Macrocystis pyrifera P11B4 male)
ATGTGGGCCGTCGTGCAGATCTCGTCGGAACACTTCCCTAAGGTTGGCAA
GGGAATTCATTACCTGGATGACAAACGCACGTGCGTGATTCCCGTCGACC
TGGAACCGGACAAGACGTACGTGCTGTGGTTCAATCGGGGACGCTTTAAC
AGTTTTCGCGATACCGAAAATAACCCCGCGATTCCGTATCTGCTCGTGTT
CAAAACACGATCTGAATGAATGTGGGCCGTCGTGCAGATCTCGTCGGAAC
ACTTCCCTAAGGTTGGCAAGGGAATTCATTACCTGGATGACAAACGCACG
TGCGTGATTCCCGTCGACCTGGAACCGGACAAGACGTACGTGCTGTGGTT
CAATCGGGGACGCTTTAACAGTTTTCGCGATACCGAAAATAACCCCGCGA
TTCCGTATCTGCTCGTGTTCAAAACACGATCTGAATGA
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