mRNA_M-pyrifera_M_contig126046.5259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126046.5259.1
Unique NamemRNA_M-pyrifera_M_contig126046.5259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A6A5B3P0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B3P0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.920e-12
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   28 GTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
             ++ ++SE D  E+LLR+    AG CK+++HPEWGA+VYPAS+ T+ P+   L      FV H
Sbjct:   14 NSNKVYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSDLVLDIVSKGFVQH 76          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A024U9A1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9A1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.260e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
            P+L + S +    ++SE D  E+LLR+    AG CK+++HPEWGA+VYPAS+ T+ P+   L      FV H
Sbjct:  129 PMLALNSNK----VYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSELVLNVVSKGFVQH 196          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: W4GVX0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVX0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.650e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
            P+L + S +    ++SE D  E+LLR+    AG CK+++HPEWGA+VYPAS+ T+ P+   L      FV H
Sbjct:  152 PMLALNSNK----VYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSDLVLDIVSKGFVQH 219          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: K3WPJ2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPJ2_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 1.190e-10
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKI 198
            P+L +QS +    ++SE D  E+LLR++ + AG CK+++HP WGA+VYPAS+ T+   PY L  ++
Sbjct:  127 PMLTLQSNK----VYSEVDGVEVLLRYRCNSAGMCKILIHPSWGAAVYPASLFTN--APYELVREV 186          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A1V9ZZ20_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZZ20_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.800e-10
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    7 LPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP--TPYTLFSK 195
            LPM +   +S ++SE D  E+LLR++   AG CK++LHPEWGA+VYPAS+ T+ P    Y + SK
Sbjct:  126 LPMLAL-NSSKVYSEVDGVEVLLRYRCLSAGMCKILLHPEWGAAVYPASLFTTAPYDVVYAIISK 189          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A1V9ZA04_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZA04_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.830e-10
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
            P+L M S    S ++SE D  E+LL +    AG CK++LHPEWGA+VYPAS+ T+ P
Sbjct:  118 PMLAMNS----SKVYSEVDGVEVLLHYSCLSAGMCKILLHPEWGAAVYPASLFTTAP 170          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A067CS91_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CS91_SAPPC)

HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
            P+L M S    S ++SE D  E+LL +    AG CK++LHPEWGA+VYPAS+ T+ P
Sbjct:  121 PMLAMNS----SKVYSEVDGVEVLLHYSCLSAGMCKILLHPEWGAAVYPASLFTTAP 173          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: H3GEE8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEE8_PHYRM)

HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
            P+L + S +    ++SE D  ELLLR++   AG CK++LHP WGA+VYPAS+ T+ P
Sbjct:  118 PMLTLSSNK----VYSEVDGVELLLRYRCLSAGMCKILLHPAWGAAVYPASLFTTAP 170          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A485KNW0_9STRA (Aste57867_9822 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNW0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.950e-10
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
            P++ + S +    +FSE D  E+LLR+    AG CK+++HPEWGA+VYPAS+ T+ P
Sbjct:  133 PMIALNSNK----VFSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAP 185          
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A6G0X228_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X228_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.930e-10
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
            P+L + S +    ++SE D  E+LLR+    AG CK+++HPEWGA+VYPAS+ T+ P
Sbjct:  121 PMLALNSNK----VYSEVDGVEVLLRYSCLSAGMCKILIHPEWGAAVYPASLFTTAP 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5B3P0_9STRA9.920e-1244.44Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024U9A1_9STRA6.260e-1143.06Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GVX0_9STRA8.650e-1143.06Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
K3WPJ2_GLOUD1.190e-1043.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZZ20_9STRA1.800e-1049.23General transcription and DNA repair factor IIH he... [more]
A0A1V9ZA04_9STRA5.830e-1050.88Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CS91_SAPPC6.100e-1050.88Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
H3GEE8_PHYRM6.100e-1049.12Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A485KNW0_9STRA6.950e-1047.37Aste57867_9822 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X228_9STRA7.930e-1047.37Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126046contigM-pyrifera_M_contig126046:74..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog157072.XP_008869042.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cobalamin metabolic process
EggNOG OGsKOG3994@1,KOG3994@2759
Ec32 ortholog descriptionMethylmalonic aciduria and homocystinuria type D protein
Ec32 orthologEc-01_009710.1
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.6559527-UTR-M-pyrifera_M_contig126046:73..851622815775.6559527-UTR-M-pyrifera_M_contig126046:73..85Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126046 74..85 +
1692277563.8435986-UTR-M-pyrifera_M_contig126046:73..851692277563.8435986-UTR-M-pyrifera_M_contig126046:73..85Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126046 74..85 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.6758864-CDS-M-pyrifera_M_contig126046:85..2891622815775.6758864-CDS-M-pyrifera_M_contig126046:85..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126046 86..289 +
1692277563.8546808-CDS-M-pyrifera_M_contig126046:85..2891692277563.8546808-CDS-M-pyrifera_M_contig126046:85..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126046 86..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126046.5259.1prot_M-pyrifera_M_contig126046.5259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126046 86..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126046.5259.1

>prot_M-pyrifera_M_contig126046.5259.1 ID=prot_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIIT
SHPTPYTLFSKIPSFVPH
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mRNA from alignment at M-pyrifera_M_contig126046:74..289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126046.5259.1 ID=mRNA_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig126046:74..289+ (Macrocystis pyrifera P11B4 male)
CCAATCCTTCCTATGCAGAGTAAACGTGGTACAAGCACGATATTTTCAGA GCCGGATGCGTTTGAACTACTGCTACGATGGAAGAGTTCTGATGCTGGTG GATGTAAAGTTGTGTTACATCCAGAGTGGGGTGCATCTGTTTACCCAGCT TCAATCATTACTTCCCATCCAACACCATACACTCTATTCTCAAAAATACC GTCTTTTGTTCCCCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126046:74..289+

>mRNA_M-pyrifera_M_contig126046.5259.1 ID=mRNA_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig126046:74..289+ (Macrocystis pyrifera P11B4 male)
ATGCAGAGTAAACGTGGTACAAGCACGATATTTTCAGAGCCGGATGCGTT
TGAACTACTGCTACGATGGAAGAGTTCTGATGCTGGTGGATGTAAAGTTG
TGTTACATCCAGAGTGGGGTGCATCTGTTTACCCAGCTTCAATCATTACT
TCCCATCCAACACCATACACTCTATTCTCAAAAATACCGTCTTTTGTTCC
CCATATGCAGAGTAAACGTGGTACAAGCACGATATTTTCAGAGCCGGATG
CGTTTGAACTACTGCTACGATGGAAGAGTTCTGATGCTGGTGGATGTAAA
GTTGTGTTACATCCAGAGTGGGGTGCATCTGTTTACCCAGCTTCAATCAT
TACTTCCCATCCAACACCATACACTCTATTCTCAAAAATACCGTCTTTTG
TTCCCCAT
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