mRNA_M-pyrifera_M_contig126046.5259.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A6A5B3P0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B3P0_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 9.920e-12 Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 28 GTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
++ ++SE D E+LLR+ AG CK+++HPEWGA+VYPAS+ T+ P+ L FV H
Sbjct: 14 NSNKVYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSDLVLDIVSKGFVQH 76
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A024U9A1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9A1_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.260e-11 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
P+L + S + ++SE D E+LLR+ AG CK+++HPEWGA+VYPAS+ T+ P+ L FV H
Sbjct: 129 PMLALNSNK----VYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSELVLNVVSKGFVQH 196
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: W4GVX0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVX0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 8.650e-11 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKIPSFVPH 216
P+L + S + ++SE D E+LLR+ AG CK+++HPEWGA+VYPAS+ T+ P+ L FV H
Sbjct: 152 PMLALNSNK----VYSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAPSDLVLDIVSKGFVQH 219
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: K3WPJ2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPJ2_GLOUD) HSP 1 Score: 63.9 bits (154), Expect = 1.190e-10 Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHPTPYTLFSKI 198
P+L +QS + ++SE D E+LLR++ + AG CK+++HP WGA+VYPAS+ T+ PY L ++
Sbjct: 127 PMLTLQSNK----VYSEVDGVEVLLRYRCNSAGMCKILIHPSWGAAVYPASLFTN--APYELVREV 186
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A1V9ZZ20_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZZ20_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.800e-10 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 7 LPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP--TPYTLFSK 195
LPM + +S ++SE D E+LLR++ AG CK++LHPEWGA+VYPAS+ T+ P Y + SK
Sbjct: 126 LPMLAL-NSSKVYSEVDGVEVLLRYRCLSAGMCKILLHPEWGAAVYPASLFTTAPYDVVYAIISK 189
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A1V9ZA04_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZA04_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 5.830e-10 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
P+L M S S ++SE D E+LL + AG CK++LHPEWGA+VYPAS+ T+ P
Sbjct: 118 PMLAMNS----SKVYSEVDGVEVLLHYSCLSAGMCKILLHPEWGAAVYPASLFTTAP 170
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A067CS91_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CS91_SAPPC) HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
P+L M S S ++SE D E+LL + AG CK++LHPEWGA+VYPAS+ T+ P
Sbjct: 121 PMLAMNS----SKVYSEVDGVEVLLHYSCLSAGMCKILLHPEWGAAVYPASLFTTAP 173
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: H3GEE8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEE8_PHYRM) HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
P+L + S + ++SE D ELLLR++ AG CK++LHP WGA+VYPAS+ T+ P
Sbjct: 118 PMLTLSSNK----VYSEVDGVELLLRYRCLSAGMCKILLHPAWGAAVYPASLFTTAP 170
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A485KNW0_9STRA (Aste57867_9822 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNW0_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.950e-10 Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
P++ + S + +FSE D E+LLR+ AG CK+++HPEWGA+VYPAS+ T+ P
Sbjct: 133 PMIALNSNK----VFSEVDGVEVLLRYNCLSAGMCKILIHPEWGAAVYPASLFTTAP 185
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Match: A0A6G0X228_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X228_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 7.930e-10 Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 1 PILPMQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITSHP 171
P+L + S + ++SE D E+LLR+ AG CK+++HPEWGA+VYPAS+ T+ P
Sbjct: 121 PMLALNSNK----VYSEVDGVEVLLRYSCLSAGMCKILIHPEWGAAVYPASLFTTAP 173 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126046.5259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126046.5259.1 >prot_M-pyrifera_M_contig126046.5259.1 ID=prot_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp MQSKRGTSTIFSEPDAFELLLRWKSSDAGGCKVVLHPEWGASVYPASIITback to top mRNA from alignment at M-pyrifera_M_contig126046:74..289+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126046.5259.1 ID=mRNA_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig126046:74..289+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126046:74..289+ >mRNA_M-pyrifera_M_contig126046.5259.1 ID=mRNA_M-pyrifera_M_contig126046.5259.1|Name=mRNA_M-pyrifera_M_contig126046.5259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig126046:74..289+ (Macrocystis pyrifera P11B4 male)back to top |