mRNA_M-pyrifera_M_contig126024.5254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126024.5254.1
Unique NamemRNA_M-pyrifera_M_contig126024.5254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A6C9Z5_9PLAN (Translation initiation factor IF-3 n=14 Tax=Planctomycetaceae TaxID=126 RepID=A6C9Z5_9PLAN)

HSP 1 Score: 181 bits (460), Expect = 3.030e-57
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YERKKKTSKNTKQHQV LKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILG+IQE+LS++AKVEQA +MASGRNMIMVLAPR
Sbjct:   29 YERKKKTSKNTKQHQVQLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGDIQEQLSEIAKVEQAATMASGRNMIMVLAPR 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A517XJS4_9PLAN (Translation initiation factor IF-3 n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517XJS4_9PLAN)

HSP 1 Score: 181 bits (460), Expect = 4.300e-57
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YERKKKTSKNTKQHQV LKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILG+IQE+LS++AKVEQA +MASGRNMIMVLAPR
Sbjct:   40 YERKKKTSKNTKQHQVQLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGDIQEQLSEIAKVEQAATMASGRNMIMVLAPR 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A2E0SJR1_9PLAN (Translation initiation factor IF-3 n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SJR1_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 1.670e-37
Identity = 71/102 (69.61%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKK +KNTKQHQ  LKEIR+RPK G HDIEFK+K AR+FL  KDKVK NIMF+GRENAHHE GR IL  I E L D+AKVE  P M  GRNM  V+APR
Sbjct:   61 YEQKKKLAKNTKQHQTQLKEIRLRPKTGDHDIEFKVKRAREFLANKDKVKINIMFKGRENAHHERGREILLGIIESLDDIAKVEAPPRMEGGRNMSTVVAPR 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A7C4LMH3_9PLAN (Translation initiation factor IF-3 n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LMH3_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 4.120e-37
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKK S +TKQHQV LKEIR+RPK G+HDIEFK+K AR+FL  KDKVK N++FRGRENAHH+ GR IL  I ++L D+AK+E+ PS+  GRNM  VLAP+
Sbjct:   67 YEQKKKHSSSTKQHQVQLKEIRLRPKTGEHDIEFKVKQAREFLTHKDKVKLNVIFRGRENAHHDRGREILVSIIDELQDVAKIEKPPSLEGGRNMTAVLAPK 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A518CKL7_9PLAN (Translation initiation factor IF-3 n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CKL7_9PLAN)

HSP 1 Score: 130 bits (328), Expect = 9.570e-37
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKK +KNTKQHQ  LKEIR+RPK G HDI+FK+K AR FL+QKDKVK NIMF+GRENAHHE GR IL  I   L D+AKVE  P M  GRNM  V++PR
Sbjct:   61 YEQKKKLAKNTKQHQTQLKEIRLRPKTGDHDIDFKVKQARTFLKQKDKVKINIMFKGRENAHHERGREILLSIIASLDDVAKVEAPPRMEGGRNMSAVVSPR 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A2E3GW47_9PLAN (Translation initiation factor IF-3 n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E3GW47_9PLAN)

HSP 1 Score: 129 bits (324), Expect = 4.610e-36
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KK+ SKNTK HQ  LKEIR+RPKIG HDIEFK+K AR FL  +DKVK  +MFRGRENAHHE GR +L  I   L D+AK+E+ P M SGR+M  +LAPR
Sbjct:   67 YEQKKRQSKNTKVHQTQLKEIRLRPKIGDHDIEFKMKKARDFLVHRDKVKLTVMFRGRENAHHERGRDVLNSIVADLEDIAKLEKPPGMESGRSMTAILAPR 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: UPI001ED909F8 (translation initiation factor IF-3 n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI001ED909F8)

HSP 1 Score: 128 bits (322), Expect = 6.170e-36
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+K+K + + KQHQV LKEIR+RPK G+HDI+FK+K AR FL  KDKVKFN+ F+GRENAHH+ GR +L  I E+L D++KVE+ PSM  GRNM  VL+P+
Sbjct:   52 YEQKRKAANSAKQHQVQLKEIRLRPKTGEHDIDFKVKQARDFLAHKDKVKFNVQFKGRENAHHDRGREMLASIIEQLQDISKVEKTPSMEGGRNMTAVLSPK 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A1C3EQI0_9PLAN (Translation initiation factor IF-3 n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A1C3EQI0_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 2.210e-35
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKK + + KQHQV +KEIR+RPK G+HDIEFK+K A++FL QKDKVK NI+FRGRENAHH+ G+ IL  I ++L++  KVEQ P +  GRNMI VLAP+
Sbjct:   72 YEQKKKHANSAKQHQVQIKEIRLRPKTGEHDIEFKVKQAKEFLSQKDKVKLNIIFRGRENAHHDRGKEILANIIQQLAEHCKVEQMPKLEGGRNMIAVLAPK 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A3E0Q5S8_9BACT (Translation initiation factor IF-3 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q5S8_9BACT)

HSP 1 Score: 127 bits (320), Expect = 2.210e-35
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKKTSK  K HQ+ +KEIR+RPK G HDIEFK+K AR+FLEQ+DKVK N+MFRGRENAHH+ GR +L +I E L D++KVE+ P M   R+M  +LAP+
Sbjct:   73 YEQKKKTSKGQKTHQIQVKEIRLRPKTGDHDIEFKIKRARRFLEQRDKVKLNVMFRGRENAHHDRGREMLNQIIEVLDDVSKVEKFPGMEGPRSMSAILAPK 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Match: A0A356AGB6_9PLAN (Translation initiation factor IF-3 n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A356AGB6_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 2.280e-35
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVKFNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLAPR 306
            YE+KKK SKNTKQHQ  LKEIR+RPKIG+HDI+FK+K AR FL   DKVK  +MF+GRENAHHE GR IL  I + L D+AK+E+ P M  GR+M  +L PR
Sbjct:   74 YEQKKKLSKNTKQHQTQLKEIRLRPKIGEHDIDFKMKKARDFLLHHDKVKLTVMFKGRENAHHERGRDILESIAKSLDDIAKLEKMPGMDGGRSMTAILTPR 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126024.5254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A6C9Z5_9PLAN3.030e-5793.14Translation initiation factor IF-3 n=14 Tax=Planct... [more]
A0A517XJS4_9PLAN4.300e-5793.14Translation initiation factor IF-3 n=6 Tax=Gimesia... [more]
A0A2E0SJR1_9PLAN1.670e-3769.61Translation initiation factor IF-3 n=1 Tax=Plancto... [more]
A0A7C4LMH3_9PLAN4.120e-3765.69Translation initiation factor IF-3 n=1 Tax=Schlesn... [more]
A0A518CKL7_9PLAN9.570e-3767.65Translation initiation factor IF-3 n=1 Tax=Polysty... [more]
A0A2E3GW47_9PLAN4.610e-3664.71Translation initiation factor IF-3 n=4 Tax=Plancto... [more]
UPI001ED909F86.170e-3661.76translation initiation factor IF-3 n=1 Tax=Schlesn... [more]
A0A1C3EQI0_9PLAN2.210e-3562.75Translation initiation factor IF-3 n=4 Tax=Plancto... [more]
A0A3E0Q5S8_9BACT2.210e-3562.75Translation initiation factor IF-3 n=1 Tax=Plancto... [more]
A0A356AGB6_9PLAN2.280e-3563.73Translation initiation factor IF-3 n=4 Tax=Plancto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126024contigM-pyrifera_M_contig126024:202..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score183.0
Seed ortholog evalue7.3e-44
Seed eggNOG ortholog344747.PM8797T_11826
Preferred nameinfC
KEGG koko:K02520
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767
EggNOG free text desc.IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
EggNOG OGs2IZ68@203682,COG0290@1,COG0290@2
Ec32 ortholog descriptionTranslation initiation factor 3, C-terminal
Ec32 orthologEc-12_004560.1
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.4612606-CDS-M-pyrifera_M_contig126024:201..5101622815775.4612606-CDS-M-pyrifera_M_contig126024:201..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126024 202..510 -
1692277563.7790563-CDS-M-pyrifera_M_contig126024:201..5101692277563.7790563-CDS-M-pyrifera_M_contig126024:201..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126024 202..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126024.5254.1prot_M-pyrifera_M_contig126024.5254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126024 202..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126024.5254.1

>prot_M-pyrifera_M_contig126024.5254.1 ID=prot_M-pyrifera_M_contig126024.5254.1|Name=mRNA_M-pyrifera_M_contig126024.5254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
YERKKKTSKNTKQHQVHLKEIRMRPKIGKHDIEFKLKSARKFLEQKDKVK
FNIMFRGRENAHHELGRTILGEIQEKLSDLAKVEQAPSMASGRNMIMVLA
PR*
back to top

mRNA from alignment at M-pyrifera_M_contig126024:202..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126024.5254.1 ID=mRNA_M-pyrifera_M_contig126024.5254.1|Name=mRNA_M-pyrifera_M_contig126024.5254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig126024:202..510- (Macrocystis pyrifera P11B4 male)
TACGAGCGTAAAAAGAAGACCAGCAAAAACACCAAGCAGCATCAGGTGCA
TCTGAAAGAAATCCGGATGCGTCCGAAAATCGGCAAACATGACATTGAGT
TCAAGCTGAAAAGCGCCCGGAAGTTTCTGGAGCAGAAAGACAAGGTCAAA
TTCAATATCATGTTCCGTGGTCGTGAAAACGCGCACCACGAACTCGGCCG
AACTATCCTCGGAGAAATCCAGGAAAAGCTTTCCGATCTGGCAAAAGTGG
AGCAGGCTCCCTCAATGGCCAGCGGTCGGAATATGATCATGGTGCTGGCT
CCCAGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126024:202..510-

>mRNA_M-pyrifera_M_contig126024.5254.1 ID=mRNA_M-pyrifera_M_contig126024.5254.1|Name=mRNA_M-pyrifera_M_contig126024.5254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig126024:202..510- (Macrocystis pyrifera P11B4 male)
TACGAGCGTAAAAAGAAGACCAGCAAAAACACCAAGCAGCATCAGGTGCA
TCTGAAAGAAATCCGGATGCGTCCGAAAATCGGCAAACATGACATTGAGT
TCAAGCTGAAAAGCGCCCGGAAGTTTCTGGAGCAGAAAGACAAGGTCAAA
TTCAATATCATGTTCCGTGGTCGTGAAAACGCGCACCACGAACTCGGCCG
AACTATCCTCGGAGAAATCCAGGAAAAGCTTTCCGATCTGGCAAAAGTGG
AGCAGGCTCCCTCAATGGCCAGCGGTCGGAATATGATCATGGTGCTGGCT
CCCAGGTAGTACGAGCGTAAAAAGAAGACCAGCAAAAACACCAAGCAGCA
TCAGGTGCATCTGAAAGAAATCCGGATGCGTCCGAAAATCGGCAAACATG
ACATTGAGTTCAAGCTGAAAAGCGCCCGGAAGTTTCTGGAGCAGAAAGAC
AAGGTCAAATTCAATATCATGTTCCGTGGTCGTGAAAACGCGCACCACGA
ACTCGGCCGAACTATCCTCGGAGAAATCCAGGAAAAGCTTTCCGATCTGG
CAAAAGTGGAGCAGGCTCCCTCAATGGCCAGCGGTCGGAATATGATCATG
GTGCTGGCTCCCAGGTAG
back to top