mRNA_M-pyrifera_M_contig125984.5245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125984.5245.1
Unique NamemRNA_M-pyrifera_M_contig125984.5245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig125984.5245.1 vs. uniprot
Match: UPI0019FF4931 (DUF1565 domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931)

HSP 1 Score: 51.6 bits (122), Expect = 3.250e-5
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   34 VLSLALGAGAAQYYFSPAGSDSNSGTSSQEPFLTLSRALNASAAGDTIEAASGNY 198
            V+S  + A    YY SP+GSDSNSGTS+  PF T+ +A++ +  GDTI  ASG Y
Sbjct:   23 VISAPVFAAGTNYYVSPSGSDSNSGTSAGSPFQTIQKAVDLAQPGDTINLASGTY 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125984.5245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019FF49313.250e-550.91DUF1565 domain-containing protein n=1 Tax=Chlorofl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125984contigM-pyrifera_M_contig125984:170..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size342
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.1112916-UTR-M-pyrifera_M_contig125984:169..1721622815775.1112916-UTR-M-pyrifera_M_contig125984:169..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125984 170..172 +
1692277563.625725-UTR-M-pyrifera_M_contig125984:169..1721692277563.625725-UTR-M-pyrifera_M_contig125984:169..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125984 170..172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.1231375-CDS-M-pyrifera_M_contig125984:172..5111622815775.1231375-CDS-M-pyrifera_M_contig125984:172..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125984 173..511 +
1692277563.634021-CDS-M-pyrifera_M_contig125984:172..5111692277563.634021-CDS-M-pyrifera_M_contig125984:172..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125984 173..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125984.5245.1prot_M-pyrifera_M_contig125984.5245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125984 173..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125984.5245.1

>prot_M-pyrifera_M_contig125984.5245.1 ID=prot_M-pyrifera_M_contig125984.5245.1|Name=mRNA_M-pyrifera_M_contig125984.5245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MKAAATLLLGVLSLALGAGAAQYYFSPAGSDSNSGTSSQEPFLTLSRALN
ASAAGDTIEAASGNYTGSENVGLSFDSRTISGAGADTVFQGSAGSTMFSP
SGAAAFANLTLKG
back to top

mRNA from alignment at M-pyrifera_M_contig125984:170..511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125984.5245.1 ID=mRNA_M-pyrifera_M_contig125984.5245.1|Name=mRNA_M-pyrifera_M_contig125984.5245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig125984:170..511+ (Macrocystis pyrifera P11B4 male)
CACATGAAGGCAGCAGCAACACTCTTGCTCGGCGTACTGTCTCTTGCACT
TGGGGCGGGAGCTGCGCAGTACTACTTCTCCCCGGCGGGAAGCGATAGCA
ACAGCGGGACGTCGTCGCAGGAGCCCTTCCTCACGCTGTCCAGGGCACTG
AACGCATCGGCGGCGGGCGACACGATCGAGGCAGCGAGCGGGAACTACAC
AGGCAGCGAGAACGTGGGCCTCTCCTTCGACAGCAGGACCATCTCCGGCG
CAGGAGCGGACACAGTGTTCCAGGGCTCGGCCGGCTCGACCATGTTCTCC
CCAAGCGGCGCGGCTGCATTTGCGAACCTCACACTGAAGGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125984:170..511+

>mRNA_M-pyrifera_M_contig125984.5245.1 ID=mRNA_M-pyrifera_M_contig125984.5245.1|Name=mRNA_M-pyrifera_M_contig125984.5245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig125984:170..511+ (Macrocystis pyrifera P11B4 male)
ATGAAGGCAGCAGCAACACTCTTGCTCGGCGTACTGTCTCTTGCACTTGG
GGCGGGAGCTGCGCAGTACTACTTCTCCCCGGCGGGAAGCGATAGCAACA
GCGGGACGTCGTCGCAGGAGCCCTTCCTCACGCTGTCCAGGGCACTGAAC
GCATCGGCGGCGGGCGACACGATCGAGGCAGCGAGCGGGAACTACACAGG
CAGCGAGAACGTGGGCCTCTCCTTCGACAGCAGGACCATCTCCGGCGCAG
GAGCGGACACAGTGTTCCAGGGCTCGGCCGGCTCGACCATGTTCTCCCCA
AGCGGCGCGGCTGCATTTGCGAACCTCACACTGAAGGGAATGAAGGCAGC
AGCAACACTCTTGCTCGGCGTACTGTCTCTTGCACTTGGGGCGGGAGCTG
CGCAGTACTACTTCTCCCCGGCGGGAAGCGATAGCAACAGCGGGACGTCG
TCGCAGGAGCCCTTCCTCACGCTGTCCAGGGCACTGAACGCATCGGCGGC
GGGCGACACGATCGAGGCAGCGAGCGGGAACTACACAGGCAGCGAGAACG
TGGGCCTCTCCTTCGACAGCAGGACCATCTCCGGCGCAGGAGCGGACACA
GTGTTCCAGGGCTCGGCCGGCTCGACCATGTTCTCCCCAAGCGGCGCGGC
TGCATTTGCGAACCTCACACTGAAGGGA
back to top