mRNA_M-pyrifera_M_contig125954.5243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125954.5243.1
Unique NamemRNA_M-pyrifera_M_contig125954.5243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125954.5243.1 vs. uniprot
Match: B0E7U6_ENTDS (26S proteasome non-ATPase regulatory subunit, putative n=8 Tax=Entamoeba TaxID=5758 RepID=B0E7U6_ENTDS)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-6
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:    1 KQAMYLHLASQSPCRFILDYFLIEKKIDADSKNAVGETALHLAVKTGQLENIKQLVKCSSSTYVPNDEGLFPIHIGVNEQNVKAIDALINLGVD 282
            ++A   H A     R +++ FL + K  A +++  G T LH AV +G +E  K + K + +    N     P+HI   EQN+  I A+I+LG D
Sbjct:  121 RKANVYHFACSRGRRDLVELFLGKWKEGASARDKYGNTPLHRAVASGNIECTKLIAKKTHTIIAQNSMKKTPLHIACEEQNIPMIKAVIDLGGD 214
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BLAST of mRNA_M-pyrifera_M_contig125954.5243.1 vs. uniprot
Match: A0A366R7U0_GIBMO (Protein SSH4 n=1 Tax=Gibberella moniliformis TaxID=117187 RepID=A0A366R7U0_GIBMO)

HSP 1 Score: 51.2 bits (121), Expect = 2.430e-5
Identity = 28/92 (30.43%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:   16 LHLASQSPCRFILDYFLIEKKIDADSKNAVGETALHLAVKTGQ---LENIKQLVKCSSSTYVPNDEGLFPIHIGVNEQNVKAIDALINLGVD 282
            LHL S  P         ++ KID +++N  G TA+H+A ++G+   LE IK L    +       +G   +H+  N  + + +D L+ LG+D
Sbjct: 1387 LHLVSDEPTGLQSVQHYLKTKIDPNTRNEDGLTAIHVAAESGESDRLEVIKLLTSHGADATATGQDGQTALHLAANADHQEVVDYLLELGLD 1478
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125954.5243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B0E7U6_ENTDS1.340e-632.9826S proteasome non-ATPase regulatory subunit, puta... [more]
A0A366R7U0_GIBMO2.430e-530.43Protein SSH4 n=1 Tax=Gibberella moniliformis TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125954contigM-pyrifera_M_contig125954:3..284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.019329-CDS-M-pyrifera_M_contig125954:2..2751622815775.019329-CDS-M-pyrifera_M_contig125954:2..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125954 3..275 -
1692277563.5986073-CDS-M-pyrifera_M_contig125954:2..2751692277563.5986073-CDS-M-pyrifera_M_contig125954:2..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125954 3..275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.0335274-UTR-M-pyrifera_M_contig125954:275..2841622815775.0335274-UTR-M-pyrifera_M_contig125954:275..284Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125954 276..284 -
1692277563.6099982-UTR-M-pyrifera_M_contig125954:275..2841692277563.6099982-UTR-M-pyrifera_M_contig125954:275..284Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125954 276..284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125954.5243.1prot_M-pyrifera_M_contig125954.5243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125954 3..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125954.5243.1

>prot_M-pyrifera_M_contig125954.5243.1 ID=prot_M-pyrifera_M_contig125954.5243.1|Name=mRNA_M-pyrifera_M_contig125954.5243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MYLHLASQSPCRFILDYFLIEKKIDADSKNAVGETALHLAVKTGQLENIK
QLVKCSSSTYVPNDEGLFPIHIGVNEQNVKAIDALINLGVD
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mRNA from alignment at M-pyrifera_M_contig125954:3..284-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125954.5243.1 ID=mRNA_M-pyrifera_M_contig125954.5243.1|Name=mRNA_M-pyrifera_M_contig125954.5243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig125954:3..284- (Macrocystis pyrifera P11B4 male)
AAACAAGCAATGTATCTTCATCTTGCTTCACAATCACCTTGTCGCTTTAT
TTTAGATTATTTCTTGATTGAGAAAAAAATTGACGCAGACAGTAAAAATG
CTGTAGGTGAAACTGCACTGCATCTTGCCGTTAAAACTGGACAGCTTGAA
AATATTAAACAATTAGTTAAGTGTTCAAGTTCGACCTATGTACCAAATGA
TGAGGGATTATTCCCTATTCATATAGGAGTCAATGAACAAAATGTTAAAG
CTATTGATGCGCTAATCAATTTGGGTGTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125954:3..284-

>mRNA_M-pyrifera_M_contig125954.5243.1 ID=mRNA_M-pyrifera_M_contig125954.5243.1|Name=mRNA_M-pyrifera_M_contig125954.5243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig125954:3..284- (Macrocystis pyrifera P11B4 male)
ATGTATCTTCATCTTGCTTCACAATCACCTTGTCGCTTTATTTTAGATTA
TTTCTTGATTGAGAAAAAAATTGACGCAGACAGTAAAAATGCTGTAGGTG
AAACTGCACTGCATCTTGCCGTTAAAACTGGACAGCTTGAAAATATTAAA
CAATTAGTTAAGTGTTCAAGTTCGACCTATGTACCAAATGATGAGGGATT
ATTCCCTATTCATATAGGAGTCAATGAACAAAATGTTAAAGCTATTGATG
CGCTAATCAATTTGGGTGTTGATATGTATCTTCATCTTGCTTCACAATCA
CCTTGTCGCTTTATTTTAGATTATTTCTTGATTGAGAAAAAAATTGACGC
AGACAGTAAAAATGCTGTAGGTGAAACTGCACTGCATCTTGCCGTTAAAA
CTGGACAGCTTGAAAATATTAAACAATTAGTTAAGTGTTCAAGTTCGACC
TATGTACCAAATGATGAGGGATTATTCCCTATTCATATAGGAGTCAATGA
ACAAAATGTTAAAGCTATTGATGCGCTAATCAATTTGGGTGTTGAT
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